Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.5e-141 506.1 253 100.0
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 9.6e-112 407.1 206 99.5
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 1.5e-64 250.4 246 57.3
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 7.5e-64 248.1 272 52.6
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 5.3e-62 241.9 203 61.6
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 3.5e-61 239.2 251 53.4
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 1.0e-60 237.7 248 52.8
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 3.8e-60 235.7 261 52.5
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 4.0e-57 225.7 214 54.7
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 4.8e-55 218.8 268 48.9
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 9.1e-54 214.5 233 48.5
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 2.7e-53 213.0 184 54.9
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 3.5e-53 212.6 243 48.6
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 3.5e-53 212.6 225 50.7
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 2.3e-52 209.9 221 49.3
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.5e-51 207.2 212 49.1
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 9.5e-51 204.5 225 47.1
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 1.2e-50 204.1 212 48.6
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 1.6e-50 203.8 200 54.5
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 1.8e-49 200.3 197 52.3
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 1.3e-47 194.1 255 44.7
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 3.7e-47 192.6 208 49.5
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 1.8e-46 190.3 179 53.1
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 4.5e-45 185.7 234 43.2
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 5.9e-45 185.3 154 61.0
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 1.0e-44 184.5 218 44.5
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 6.6e-44 181.8 204 48.5
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 6.6e-44 181.8 161 59.6
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 1.1e-43 181.0 239 43.9
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 1.5e-43 180.6 176 52.3
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 9.5e-43 177.9 210 44.8
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 4.7e-42 175.6 238 45.4
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 2.3e-41 173.3 201 45.3
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 3.0e-41 172.9 260 41.5
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 4.0e-41 172.6 153 56.2
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 4.0e-41 172.6 244 40.6
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 6.8e-41 171.8 226 43.4
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 1.2e-40 171.0 200 44.5
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 1.5e-40 170.6 222 43.2
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 4.4e-40 169.1 244 42.6
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 1.3e-39 167.5 217 46.5
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 6.4e-39 165.2 169 48.5
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 1.8e-38 163.7 236 40.7
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 9.2e-38 161.4 202 42.1
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.6e-37 160.6 133 61.7
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 3.0e-36 156.4 172 43.6
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 5.0e-36 155.6 248 41.1
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.5e-35 153.3 180 42.2
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 5.6e-35 152.1 168 47.0
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 3.6e-34 149.4 140 50.7
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 4.7e-34 149.1 180 46.1
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 1.4e-33 147.5 229 40.6
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 5.2e-33 145.6 180 46.1
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 1.5e-32 144.1 177 46.3
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 2.6e-32 143.3 235 36.6
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 4.4e-32 142.5 177 45.8
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 9.8e-32 141.4 130 53.1
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 1.3e-31 141.0 135 47.4
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 1.7e-31 140.6 158 45.6
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 4.9e-31 139.0 252 37.3
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 4.9e-31 139.0 147 44.2
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 8.3e-31 138.3 166 42.2
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.9e-30 137.1 144 44.4
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 3.2e-30 136.3 162 46.3
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 7.0e-30 135.2 161 44.1
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 1.2e-29 134.4 217 36.9
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.6e-29 134.0 201 38.3
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 2.7e-29 133.3 205 41.5
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 5.6e-27 125.6 116 50.0
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 2.1e-26 123.6 172 41.9
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 5.8e-24 115.5 120 51.7
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 8.3e-23 111.7 151 42.4
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 9.2e-22 108.2 170 38.8
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 1.1e-19 101.3 129 41.1
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 2.5e-19 100.1 88 50.0
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 3.6e-18 96.3 130 37.7
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 8.9e-17 91.7 142 35.2
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 8.9e-17 91.7 147 34.7
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.5e-16 90.9 147 35.4
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 4.4e-16 89.4 139 39.6
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 9.9e-16 88.2 158 31.0
Dinv38911 Davidia involucrata HOM05D002745 ORTHO05D002945 1.3e-15 87.8 135 34.1
Sc22g0005360 Simmondsia chinensis HOM05D002745 ORTHO05D002945 1.4e-14 84.3 142 33.8
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 1.9e-14 84.0 147 27.9
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 5.4e-14 82.4 84 48.8
DCAR_000629 Daucus carota HOM05D002745 ORTHO05D002945 7.1e-14 82.0 210 27.6
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 9.2e-14 81.6 132 34.1
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 1.6e-13 80.9 118 33.9
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 2.7e-13 80.1 132 33.3
FAN13G2577 Fragaria x ananassa HOM05D002745 ORTHO05D002945 2.7e-13 80.1 132 34.1
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 3.5e-13 79.7 198 31.8
Rhsim07G0088000 Rhododendron simsii HOM05D002745 ORTHO05D002945 3.5e-13 79.7 135 34.1
AUR62019734 Chenopodium quinoa HOM05D002745 ORTHO05D002945 4.6e-13 79.3 199 27.1
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 4.6e-13 79.3 153 28.1
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 6.0e-13 79.0 140 30.7
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 7.8e-13 78.6 198 31.3
Gohir.D12G233100 Gossypium hirsutum HOM05D002745 ORTHO05D002945 7.8e-13 78.6 169 32.0
SalBow8G0983 Salvia bowleyana HOM05D002745 ORTHO05D002945 7.8e-13 78.6 155 30.3
Gohir.A12G234200 Gossypium hirsutum HOM05D002745 ORTHO05D002945 1.0e-12 78.2 169 32.5
Gorai.008G249500 Gossypium raimondii HOM05D002745 ORTHO05D002945 1.3e-12 77.8 169 32.0
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 1.3e-12 77.8 164 29.9
QL12p032067 Quercus lobata HOM05D002745 ORTHO05D002945 1.3e-12 77.8 116 32.8
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 1.7e-12 77.4 129 32.6
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.3e-12 77.0 88 43.2
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 3.0e-12 76.6 153 31.4
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 3.9e-12 76.3 131 32.8
Psat2g182960 Pisum sativum HOM05D002745 ORTHO05D002945 3.9e-12 76.3 158 30.4
ATR0661G383 Amborella trichopoda HOM05D002745 ORTHO05D002945 5.1e-12 75.9 132 33.3
TPR.G6622 Trifolium pratense HOM05D002745 ORTHO05D002945 5.1e-12 75.9 149 30.2
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 1.1e-11 74.7 110 34.5
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 1.5e-11 74.3 116 33.6
EL10Ac5g12821 Beta vulgaris HOM05D002745 ORTHO05D002945 3.3e-11 73.2 205 25.4
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 3.3e-11 73.2 123 34.1
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 5.6e-11 72.4 135 32.6
LjContig00312_ERROPOS870357g0020900 Lotus japonicus HOM05D002745 ORTHO05D002945 9.6e-11 71.6 116 33.6
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 1.6e-10 70.9 156 28.2
Prupe.5G104900 Prunus persica HOM05D002745 ORTHO05D002945 2.1e-10 70.5 130 29.2
SEGI_30590 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 2.1e-10 70.5 133 30.1
CDE11G0610 Ceratophyllum demersum HOM05D002745 ORTHO05D002945 2.8e-10 70.1 113 31.0
Actinidia33738 Actinidia chinensis HOM05D002745 ORTHO05D002945 4.7e-10 69.3 90 35.6
FvH4_2g14400 Fragaria vesca HOM05D002745 ORTHO05D002945 6.2e-10 68.9 112 33.9
FAN20G0622 Fragaria x ananassa HOM05D002745 ORTHO05D002945 6.2e-10 68.9 112 33.0
Actinidia27369 Actinidia chinensis HOM05D002745 ORTHO05D002945 1.1e-09 68.2 114 32.5
CANSAT56G3529 Cannabis sativa HOM05D002745 ORTHO05D002945 1.8e-09 67.4 119 32.8
Glyma.01G221700 Glycine max HOM05D002745 ORTHO05D002945 1.8e-09 67.4 167 26.9
Peaxi162Scf00074g01837 Petunia axillaris HOM05D002745 ORTHO05D002945 1.8e-09 67.4 126 28.6
CANSAT21G1564 Cannabis sativa HOM05D002745 ORTHO05D002945 2.4e-09 67.0 232 28.0
FAN15G2191 Fragaria x ananassa HOM05D002745 ORTHO05D002945 2.4e-09 67.0 112 33.0
AUR62010728 Chenopodium quinoa HOM05D002745 ORTHO05D002945 3.1e-09 66.6 105 34.3
HanXRQChr17g0559011 Helianthus annuus HOM05D002745 ORTHO05D002945 4.0e-09 66.2 134 32.8
SEGI_29799 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 6.9e-09 65.5 119 32.8
Prupe.8G022100 Prunus persica HOM05D002745 ORTHO05D002945 9.0e-09 65.1 110 30.9
SGA_v2.0_scaffold118G32594 Striga asiatica HOM05D002745 ORTHO05D002945 2.0e-08 63.9 134 30.6
arahy.Tifrunner.gnm1.ann1.DD74S9 Arachis hypogaea HOM05D002745 ORTHO05D002945 3.4e-08 63.2 119 28.6
Lsat_1_v5_gn_4_62060 Lactuca sativa HOM05D007829 ORTHO05D009903 4.4e-08 62.8 76 40.8
RcHm_v2.0_Chr6g0276731 Rosa chinensis HOM05D002745 ORTHO05D002945 4.4e-08 62.8 111 33.3
PGR042G2485 Punica granatum HOM05D002745 ORTHO05D002945 5.8e-08 62.4 125 31.2
CAN.G1039.10 Capsicum annuum HOM05D002745 ORTHO05D002945 1.3e-07 61.2 121 29.8
SalBow7G1915 Salvia bowleyana HOM05D000972 ORTHO05D007902 1.3e-07 61.2 148 27.7
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 2.2e-07 60.5 83 36.1
ATR0712G092 Amborella trichopoda HOM05D007829 ORTHO05D009903 3.8e-07 59.7 76 39.5
Haze_08826 Corylus avellana HOM05D002745 ORTHO05D002945 8.4e-07 58.5 82 34.1
Hma1.2p1_0216F.1_g090940 Hydrangea macrophylla HOM05D002745 ORTHO05D002945 8.4e-07 58.5 91 33.0
arahy.Tifrunner.gnm1.ann1.WZK5NF Arachis hypogaea HOM05D002745 ORTHO05D002945 1.1e-06 58.2 169 26.6
Sed0018292 Sechium edule HOM05D002745 ORTHO05D002945 1.1e-06 58.2 180 27.2
SGA_v2.0_scaffold1534G53980 Striga asiatica HOM05D002745 ORTHO05D002945 1.4e-06 57.8 94 33.0
arahy.Tifrunner.gnm1.ann1.10XUBW Arachis hypogaea HOM05D007829 ORTHO05D009903 1.9e-06 57.4 79 36.7
CSS0032411 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 2.4e-06 57.0 80 36.2
TAR374G0018 Trochodendron aralioides HOM05D002745 ORTHO05D002945 4.2e-06 56.2 69 34.8
LjContig00222g0027382 Lotus japonicus HOM05D002745 ORTHO05D002945 7.1e-06 55.5 146 24.7
HPP92_015464 Vanilla planifolia HOM05D007829 ORTHO05D009903 9.3e-06 55.1 78 28.2


User provided reference genes

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