Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 0.0e+00 1090.9 526 100.0
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.0e-245 851.3 528 78.4
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 4.0e-245 851.3 528 78.4
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 3.4e-236 821.6 529 75.8
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 4.4e-228 794.7 528 72.0
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 1.5e-223 779.6 532 69.7
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.5e-223 779.6 530 70.6
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.3e-222 776.5 529 70.3
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.6e-222 775.0 518 72.4
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.6e-222 775.0 518 72.4
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 8.1e-222 773.9 525 70.5
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 1.8e-221 772.7 532 69.7
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 2.4e-221 772.3 532 69.5
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.0e-221 770.4 516 72.3
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 9.0e-221 770.4 516 72.3
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 2.6e-220 768.8 528 70.1
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 4.2e-218 761.5 534 69.1
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 6.7e-216 754.2 525 70.3
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 2.0e-212 742.7 528 68.8
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 4.5e-212 741.5 551 66.4
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 4.5e-212 741.5 551 66.4
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 5.8e-212 741.1 525 69.7
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 7.6e-212 740.7 525 69.9
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 2.2e-211 739.2 529 68.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 3.8e-211 738.4 524 69.1
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-210 735.3 523 68.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 2.7e-209 732.3 529 68.1
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 2.7e-209 732.3 530 67.7
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 4.6e-209 731.5 523 67.9
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 6.0e-209 731.1 528 67.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 7.9e-209 730.7 526 66.9
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 1.8e-208 729.6 521 66.2
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.1e-207 726.9 519 69.9
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 1.5e-207 726.5 531 68.9
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.3e-207 725.3 529 68.1
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 5.7e-207 724.5 526 68.3
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 7.4e-207 724.2 543 65.4
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 9.6e-207 723.8 526 68.6
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.1e-206 722.6 529 67.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 3.7e-206 721.8 525 68.8
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.2e-204 716.8 537 65.7
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 4.5e-204 714.9 521 66.2
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 4.5e-204 714.9 531 67.6
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 7.6e-204 714.1 522 67.0
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.7e-203 713.0 500 68.6
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 3.8e-203 711.8 519 67.6
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.4e-202 709.9 519 67.6
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 1.9e-202 709.5 518 65.1
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 1.9e-202 709.5 535 66.4
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 5.5e-202 708.0 519 67.2
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 9.3e-202 707.2 522 67.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 4.6e-201 704.9 531 65.7
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 7.9e-201 704.1 530 67.4
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 3.0e-200 702.2 525 66.5
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 2.5e-199 699.1 532 65.8
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 2.5e-199 699.1 522 64.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 7.4e-199 697.6 524 65.3
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 4.8e-198 694.9 525 65.5
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 4.8e-198 694.9 528 65.9
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 6.3e-198 694.5 536 63.6
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 6.3e-198 694.5 520 66.5
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 8.2e-198 694.1 532 64.5
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 5.3e-197 691.4 528 65.2
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 1.5e-196 689.9 525 65.7
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 2.6e-196 689.1 525 65.5
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 1.3e-195 686.8 537 63.5
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 1.3e-195 686.8 526 66.0
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 8.5e-195 684.1 529 65.4
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 7.2e-194 681.0 518 65.8
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 1.2e-193 680.2 526 62.5
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 1.2e-193 680.2 533 63.4
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 7.9e-193 677.6 528 64.4
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 4.3e-191 671.8 528 64.4
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 5.7e-191 671.4 541 62.5
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 9.7e-191 670.6 526 63.1
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 3.7e-190 668.7 557 61.0
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 1.2e-188 663.7 532 63.0
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 5.9e-188 661.4 531 62.3
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 7.7e-188 661.0 535 62.6
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 6.5e-187 657.9 535 61.9
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 2.5e-186 656.0 557 59.8
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 2.7e-185 652.5 551 60.4
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 3.6e-185 652.1 539 61.0
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 7.9e-185 651.0 464 66.6
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.9e-184 648.7 525 63.0
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 1.1e-183 647.1 523 60.6
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 2.0e-183 646.4 543 58.6
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 2.6e-183 646.0 544 58.8
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 3.3e-183 645.6 556 59.7
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.7e-183 644.8 565 58.1
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 7.4e-183 644.4 540 59.1
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 1.7e-182 643.3 557 58.2
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 6.3e-182 641.3 528 61.9
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 1.8e-181 639.8 558 58.8
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 2.4e-181 639.4 530 60.4
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 4.1e-181 638.6 560 58.8
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 3.5e-180 635.6 533 61.2
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 3.5e-180 635.6 458 63.8
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 8.5e-179 630.9 536 58.0
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 5.2e-176 621.7 524 59.2
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 2.2e-174 616.3 538 57.2
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.1e-173 612.5 404 70.8
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.1e-173 610.9 531 58.8
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 5.9e-172 608.2 536 57.6
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 1.5e-170 603.6 461 64.0
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.9e-170 603.2 459 62.7
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 2.8e-166 589.3 393 71.0
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.4e-165 586.3 446 64.8
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.7e-164 582.8 483 60.7
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 5.0e-163 578.6 442 61.5
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 6.3e-158 561.6 311 83.0
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 3.3e-154 549.3 383 67.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 1.0e-147 527.7 446 58.5
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 1.5e-146 523.9 476 56.1
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 1.5e-143 513.8 290 82.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.4e-143 512.7 311 75.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 6.4e-142 508.4 311 74.6
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 2.5e-138 496.5 303 75.9
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 7.6e-127 458.4 469 46.5
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.4e-125 454.1 383 58.7
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.1e-120 438.0 288 69.1
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 2.4e-117 426.8 524 42.6
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 3.0e-115 419.9 528 41.9
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 3.9e-115 419.5 246 80.1
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.1e-112 411.4 241 78.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 7.1e-109 398.7 238 79.4
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 5.7e-90 335.9 480 43.5
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 1.7e-86 324.3 198 77.8
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 4.3e-82 309.7 385 46.8
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.1e-80 303.1 330 50.0
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 1.2e-79 301.6 200 69.5
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.4e-77 294.7 242 58.3
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 2.5e-69 267.3 270 54.1
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 6.7e-67 259.2 166 72.3
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.5e-53 214.2 236 49.2
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.6e-52 211.5 200 54.5
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.1e-52 209.5 200 54.0
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 4.0e-51 206.8 157 65.0
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 5.2e-51 206.5 129 70.5
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 5.2e-51 206.5 129 70.5
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.2e-49 201.1 124 71.8
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.0e-47 194.5 180 51.1
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-46 192.2 444 28.8
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 2.1e-44 184.5 109 78.0
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.1e-40 172.2 291 37.5
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 3.5e-39 167.2 98 87.8
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 8.6e-38 162.5 159 50.9
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.1e-37 162.2 106 66.0
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 3.3e-37 160.6 165 50.3
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.3e-35 154.5 172 47.7
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 8.9e-35 152.5 284 37.7
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 2.9e-33 147.5 278 36.0
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.3e-30 138.7 183 41.5
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.6e-30 136.3 278 34.5
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.6e-28 131.7 79 72.2
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 1.6e-28 131.7 79 72.2
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 1.2e-26 125.6 100 64.0
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 1.4e-24 118.6 85 62.4
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 1.4e-19 102.1 104 50.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 1.7e-17 95.1 72 63.9
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 2.1e-15 88.2 59 64.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 7.3e-13 79.7 91 42.9
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 5.8e-10 70.1 193 29.5
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.9e-08 65.1 34 97.1


User provided reference genes

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