Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0439 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.7e-43 178.3 94 100.0
TAR627G0061 Trochodendron aralioides HOM05D005059 ORTHO05D004248 7.6e-30 133.7 85 89.4
TAR624G0872 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-28 129.0 94 75.5
TAR626G0600 Trochodendron aralioides HOM05D005059 ORTHO05D004248 1.9e-28 129.0 94 73.4
TAR624G0770 Trochodendron aralioides HOM05D005059 ORTHO05D004248 8.7e-26 120.2 90 73.3
Nn6g34461 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.6e-25 117.5 95 68.4
Dinv18371 Davidia involucrata HOM05D000126 ORTHO05D000085 4.0e-23 111.3 91 65.9
Aqoxy4G00224 Aquilegia oxysepala HOM05D005059 ORTHO05D004248 2.0e-22 109.0 92 64.1
Nn3g21078 Nelumbo nucifera HOM05D005059 ORTHO05D004248 5.8e-22 107.5 96 63.5
TAR629G2882 Trochodendron aralioides HOM05D005059 ORTHO05D004248 2.9e-21 105.1 84 69.0
Thecc.06G165400 Theobroma cacao HOM05D005059 ORTHO05D004248 3.2e-20 101.7 95 61.1
Haze_06169 Corylus avellana HOM05D005059 ORTHO05D004248 2.1e-19 99.0 97 60.8
Dinv15004 Davidia involucrata HOM05D005059 ORTHO05D004248 2.7e-19 98.6 82 68.3
Gohir.D05G156000 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.7e-19 98.6 97 59.8
Gorai.009G160500 Gossypium raimondii HOM05D005059 ORTHO05D004248 2.7e-19 98.6 97 59.8
Gohir.A05G153400 Gossypium hirsutum HOM05D005059 ORTHO05D004248 6.0e-19 97.4 97 59.8
Hma1.2p1_1016F.1_g248040 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 6.0e-19 97.4 94 60.6
Hma1.2p1_0113F.1_g055120 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 1.8e-18 95.9 90 57.8
CiPaw.09G073100 Carya illinoinensis HOM05D005059 ORTHO05D004248 5.1e-18 94.4 96 54.2
COL.COLO4_31233 Corchorus olitorius HOM05D005059 ORTHO05D004248 5.1e-18 94.4 100 57.0
MBI06_g16696_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 5.1e-18 94.4 94 59.6
Ciclev10018148m.g Citrus clementina HOM05D005059 ORTHO05D004248 1.5e-17 92.8 99 60.6
Glyma.08G118500 Glycine max HOM05D005059 ORTHO05D004248 1.9e-17 92.4 95 58.9
QL05p049931 Quercus lobata HOM05D005059 ORTHO05D004248 7.4e-17 90.5 94 54.3
Cfa000656 Carpinus fangiana HOM05D005059 ORTHO05D004248 1.6e-16 89.4 99 57.6
Potri.004G061300 Populus trichocarpa HOM05D005059 ORTHO05D004248 2.8e-16 88.6 106 52.8
CAN.G411.50 Capsicum annuum HOM05D005059 ORTHO05D004248 4.8e-16 87.8 89 53.9
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.8e-16 87.8 80 56.2
Oeu060173.1 Olea europaea HOM05D005059 ORTHO05D004248 6.3e-16 87.4 96 51.0
Atru.chr10.1568 Acer truncatum HOM05D005059 ORTHO05D004248 8.2e-16 87.0 92 58.7
PGSC0003DMG400028485 Solanum tuberosum HOM05D005059 ORTHO05D004248 1.8e-15 85.9 89 55.1
FvH4_3g07300 Fragaria vesca HOM05D005059 ORTHO05D004248 2.4e-15 85.5 100 53.0
Oeu060178.1 Olea europaea HOM05D005059 ORTHO05D004248 2.4e-15 85.5 95 48.4
Sopen02g021130 Solanum pennellii HOM05D005059 ORTHO05D004248 2.4e-15 85.5 85 54.1
Rhsim13G0187800 Rhododendron simsii HOM05D005059 ORTHO05D004248 3.1e-15 85.1 97 54.6
FAN11G2282 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.1e-15 84.7 100 53.0
FAN21G0043 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.1e-15 84.7 100 53.0
FAN25G1124 Fragaria x ananassa HOM05D005059 ORTHO05D004248 4.1e-15 84.7 100 53.0
Dinv32337 Davidia involucrata HOM05D005059 ORTHO05D004248 5.3e-15 84.3 88 55.7
Phvul.002G241108 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 5.3e-15 84.3 97 55.7
Gorai.010G161500 Gossypium raimondii HOM05D005059 ORTHO05D004248 6.9e-15 84.0 99 56.6
RcHm_v2.0_Chr5g0011661 Rosa chinensis HOM05D005059 ORTHO05D004248 6.9e-15 84.0 100 51.0
FAN16G0464 Fragaria x ananassa HOM05D005059 ORTHO05D004248 9.0e-15 83.6 100 52.0
Glyma.05G161100 Glycine max HOM05D005059 ORTHO05D004248 9.0e-15 83.6 97 55.7
Oeu043118.1 Olea europaea HOM05D005059 ORTHO05D004248 9.0e-15 83.6 95 50.5
Manes.17G059300 Manihot esculenta HOM05D005059 ORTHO05D004248 1.5e-14 82.8 102 49.0
Prupe.4G067000 Prunus persica HOM05D005059 ORTHO05D004248 1.5e-14 82.8 98 52.0
CSS0027903 Camellia sinensis var. sinensis HOM05D008890 ORTHO05D004248 2.0e-14 82.4 96 56.2
SalBow7G3765 Salvia bowleyana HOM05D005059 ORTHO05D004248 2.0e-14 82.4 96 47.9
CSS0004272 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.6e-14 82.0 93 50.5
Gohir.D06G138900 Gossypium hirsutum HOM05D005059 ORTHO05D004248 2.6e-14 82.0 99 56.6
Manes.16G042800 Manihot esculenta HOM05D005059 ORTHO05D004248 2.6e-14 82.0 99 53.5
Thecc.07G128300 Theobroma cacao HOM05D008890 ORTHO05D004248 2.6e-14 82.0 93 49.5
CiPaw.10G061800 Carya illinoinensis HOM05D005059 ORTHO05D004248 3.4e-14 81.6 97 51.5
Sabra04G0040600 Salix brachista HOM05D005059 ORTHO05D004248 3.4e-14 81.6 104 51.0
MD00G1009200 Malus domestica HOM05D005059 ORTHO05D004248 7.7e-14 80.5 96 53.1
MD00G1221100 Malus domestica HOM05D005059 ORTHO05D004248 7.7e-14 80.5 96 53.1
MD10G1275500 Malus domestica HOM05D005059 ORTHO05D004248 7.7e-14 80.5 97 54.6
Thecc.07G128200 Theobroma cacao HOM05D008890 ORTHO05D004248 7.7e-14 80.5 95 53.7
Potri.011G070500 Populus trichocarpa HOM05D005059 ORTHO05D004248 1.7e-13 79.3 104 51.9
Thecc.07G128100 Theobroma cacao HOM05D008890 ORTHO05D004248 1.7e-13 79.3 94 52.1
Dinv12752 Davidia involucrata HOM05D005059 ORTHO05D004248 2.2e-13 79.0 62 64.5
CSS0038855 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.9e-13 78.6 95 50.5
Lsat_1_v5_gn_7_25601 Lactuca sativa HOM05D005059 ORTHO05D004248 2.9e-13 78.6 94 53.2
MSTRG.13233 Avicennia marina HOM05D005059 ORTHO05D004248 3.8e-13 78.2 86 48.8
MBI07_g00460_MAGBIO Magnolia biondii HOM05D005059 ORTHO05D004248 3.8e-13 78.2 69 59.4
Gohir.A06G133800 Gossypium hirsutum HOM05D005059 ORTHO05D004248 5.0e-13 77.8 99 54.5
TWI53G1149 Tripterygium wilfordii HOM05D005059 ORTHO05D004248 5.0e-13 77.8 99 50.5
Oeu040922.1 Olea europaea HOM05D005059 ORTHO05D004248 6.5e-13 77.4 92 50.0
Phvul.006G173000 Phaseolus vulgaris HOM05D005059 ORTHO05D004248 8.5e-13 77.0 95 50.5
PGR042G3020 Punica granatum HOM05D005059 ORTHO05D004248 1.4e-12 76.3 100 51.0
Migut.H01411 Erythranthe guttata HOM05D005059 ORTHO05D004248 1.9e-12 75.9 99 46.5
Eucgr.D00466 Eucalyptus grandis HOM05D005059 ORTHO05D004248 1.9e-12 75.9 99 51.5
Oeu061362.1 Olea europaea HOM05D005059 ORTHO05D004248 1.9e-12 75.9 94 46.8
Rhsim13G0187700 Rhododendron simsii HOM05D005059 ORTHO05D004248 1.9e-12 75.9 97 53.6
Glyma.13G226600 Glycine max HOM05D005059 ORTHO05D004248 2.5e-12 75.5 95 47.4
Ca_17896_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 5.5e-12 74.3 95 48.4
DCAR_005145 Daucus carota HOM05D005059 ORTHO05D004248 5.5e-12 74.3 100 48.0
BcaC05g26955 Brassica carinata HOM05D005059 ORTHO05D004248 9.4e-12 73.6 98 43.9
C05p28050 Brassica napus HOM05D005059 ORTHO05D004248 9.4e-12 73.6 98 43.9
BolC5t31533H Brassica oleracea HOM05D005059 ORTHO05D004248 9.4e-12 73.6 98 43.9
Nitab4.5_0000788g0070 Nicotiana tabacum HOM05D005059 ORTHO05D004248 9.4e-12 73.6 97 49.5
Duzib213G0473 Durio zibethinus HOM05D008890 ORTHO05D004248 1.2e-11 73.2 93 46.2
Lj4g0014521 Lotus japonicus HOM05D005059 ORTHO05D004248 1.2e-11 73.2 98 50.0
Medtr8g087390 Medicago truncatula HOM05D005059 ORTHO05D004248 1.2e-11 73.2 101 49.5
Cc02_g15600 Coffea canephora HOM05D005059 ORTHO05D004248 1.6e-11 72.8 99 46.5
Psat7g068640 Pisum sativum HOM05D005059 ORTHO05D004248 1.6e-11 72.8 101 45.5
Sabra11G0055200 Salix brachista HOM05D005059 ORTHO05D004248 3.6e-11 71.6 101 46.5
Actinidia18806 Actinidia chinensis HOM05D005059 ORTHO05D004248 4.6e-11 71.2 71 57.7
A09p37060 Brassica napus HOM05D005059 ORTHO05D004248 4.6e-11 71.2 98 41.8
BraA09t39221Z Brassica rapa HOM05D005059 ORTHO05D004248 4.6e-11 71.2 98 41.8
COL.COLO4_17491 Corchorus olitorius HOM05D008890 ORTHO05D004248 1.8e-10 69.3 95 47.4
DCAR_027980 Daucus carota HOM05D005059 ORTHO05D004248 1.8e-10 69.3 101 42.6
BcaB07g32517 Brassica carinata HOM05D005059 ORTHO05D004248 2.3e-10 68.9 104 43.3
CSS0000215 Camellia sinensis var. sinensis HOM05D005059 ORTHO05D004248 2.3e-10 68.9 91 49.5
AT1G29290 Arabidopsis thaliana HOM05D005059 ORTHO05D004248 3.0e-10 68.6 98 46.9
Duzib213G0742 Durio zibethinus HOM05D008890 ORTHO05D004248 3.9e-10 68.2 94 46.8
Lj6g0009726 Lotus japonicus HOM05D005059 ORTHO05D004248 3.9e-10 68.2 99 47.5
Gohir.A01G049400 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.1e-10 67.8 96 46.9
PSO339G2616 Papaver somniferum HOM05D005059 ORTHO05D004248 5.1e-10 67.8 105 43.8
TPR.G6728 Trifolium pratense HOM05D005059 ORTHO05D004248 5.1e-10 67.8 103 45.6
AL1G43080 Arabidopsis lyrata HOM05D005059 ORTHO05D004248 6.7e-10 67.4 98 43.9
Gohir.D01G040200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 6.7e-10 67.4 94 47.9
Thecc.07G128000 Theobroma cacao HOM05D008890 ORTHO05D004248 6.7e-10 67.4 95 47.4
Gohir.D01G040000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 8.8e-10 67.0 96 47.9
Gorai.002G049600 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.8e-10 67.0 96 47.9
Gorai.002G049900 Gossypium raimondii HOM05D008890 ORTHO05D004248 8.8e-10 67.0 96 47.9
BcaB03g13892 Brassica carinata HOM05D005059 ORTHO05D004248 1.1e-09 66.6 104 44.2
AUR62039479 Chenopodium quinoa HOM05D005059 ORTHO05D004248 1.1e-09 66.6 69 56.5
BcaC01g00093 Brassica carinata HOM05D005059 ORTHO05D004248 1.5e-09 66.2 101 42.6
A08p25180 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-09 66.2 101 42.6
C03p75700 Brassica napus HOM05D005059 ORTHO05D004248 1.5e-09 66.2 101 42.6
BolC3t19830H Brassica oleracea HOM05D005059 ORTHO05D004248 1.5e-09 66.2 101 42.6
BraA08t34472Z Brassica rapa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 101 42.6
Lsat_1_v5_gn_7_102341 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 94 47.9
Lsat_1_v5_gn_7_102441 Lactuca sativa HOM05D005059 ORTHO05D004248 1.5e-09 66.2 94 47.9
arahy.Tifrunner.gnm1.ann1.YNVN02 Arachis hypogaea HOM05D005059 ORTHO05D004248 2.0e-09 65.9 99 47.5
Medtr2g016800 Medicago truncatula HOM05D005059 ORTHO05D004248 2.0e-09 65.9 103 44.7
CARHR028610 Cardamine hirsuta HOM05D005059 ORTHO05D004248 2.5e-09 65.5 104 39.4
Gohir.A01G049800 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.3e-09 65.1 96 46.9
Gohir.A01G050000 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.3e-09 65.1 95 47.4
Gohir.D01G040100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.3e-09 65.1 96 45.8
Gorai.002G049700 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.3e-09 65.1 96 45.8
Potri.011G108101 Populus trichocarpa HOM05D008890 ORTHO05D004248 3.3e-09 65.1 94 42.6
Gohir.A01G049600 Gossypium hirsutum HOM05D008890 ORTHO05D004248 4.3e-09 64.7 96 45.8
Gorai.002G049800 Gossypium raimondii HOM05D008890 ORTHO05D004248 4.3e-09 64.7 96 46.9
Nitab4.5_0006663g0010 Nicotiana tabacum HOM05D005059 ORTHO05D004248 4.3e-09 64.7 99 47.5
Actinidia12585 Actinidia chinensis HOM05D005059 ORTHO05D004248 5.7e-09 64.3 72 52.8
Gohir.A01G049200 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.7e-09 64.3 96 44.8
Hma1.2p1_0373F.1_g138420 Hydrangea macrophylla HOM05D005059 ORTHO05D004248 5.7e-09 64.3 62 62.9
A07p10740 Brassica napus HOM05D005059 ORTHO05D004248 7.4e-09 63.9 104 43.3
BraA07t28869Z Brassica rapa HOM05D005059 ORTHO05D004248 7.4e-09 63.9 104 43.3
COL.COLO4_17492 Corchorus olitorius HOM05D008890 ORTHO05D004248 7.4e-09 63.9 95 46.3
SalBow8G0022 Salvia bowleyana HOM05D005059 ORTHO05D004248 7.4e-09 63.9 57 56.1
THA.LOC104820608 Tarenaya hassleriana HOM05D005059 ORTHO05D004248 7.4e-09 63.9 65 52.3
arahy.Tifrunner.gnm1.ann1.YXRF57 Arachis hypogaea HOM05D005059 ORTHO05D004248 1.3e-08 63.2 102 44.1
Carub.0001s2751 Capsella rubella HOM05D005059 ORTHO05D004248 1.3e-08 63.2 99 44.4
Ca_00473_v3 Cicer arietinum L. HOM05D005059 ORTHO05D004248 1.3e-08 63.2 97 45.4
Lsat_1_v5_gn_7_102321 Lactuca sativa HOM05D005059 ORTHO05D004248 1.3e-08 63.2 96 49.0
BcaB03g12151 Brassica carinata HOM05D005059 ORTHO05D004248 1.7e-08 62.8 105 41.9
Gohir.A01G049500 Gossypium hirsutum HOM05D008890 ORTHO05D004248 1.7e-08 62.8 96 43.8
Thhalv10009585m.g Eutrema salsugineum HOM05D005059 ORTHO05D004248 2.2e-08 62.4 104 40.4
Gohir.A01G049700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.2e-08 62.4 96 45.8
MSTRG.7430 Avicennia marina HOM05D005059 ORTHO05D004248 2.8e-08 62.0 85 43.5
Gohir.D01G039700 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.8e-08 62.0 95 45.3
Gohir.D01G040250 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.8e-08 62.0 96 45.8
Gohir.D01G040300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 2.8e-08 62.0 95 46.3
Gorai.002G049200 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.8e-08 62.0 95 45.3
Gorai.002G050000 Gossypium raimondii HOM05D008890 ORTHO05D004248 2.8e-08 62.0 95 46.3
BcaC06g35423 Brassica carinata HOM05D005059 ORTHO05D004248 3.7e-08 61.6 105 42.9
C07p16340 Brassica napus HOM05D005059 ORTHO05D004248 3.7e-08 61.6 105 42.9
BolC7t42128H Brassica oleracea HOM05D005059 ORTHO05D004248 3.7e-08 61.6 105 42.9
CDE02G4707 Ceratophyllum demersum HOM05D001096 ORTHO05D001629 3.7e-08 61.6 85 45.9
Gohir.D01G039900 Gossypium hirsutum HOM05D008890 ORTHO05D004248 3.7e-08 61.6 95 44.2
Gorai.002G049500 Gossypium raimondii HOM05D008890 ORTHO05D004248 3.7e-08 61.6 95 44.2
Psat1g194640 Pisum sativum HOM05D005059 ORTHO05D004248 3.7e-08 61.6 104 40.4
Sp1g25220 Schrenkiella parvula HOM05D005059 ORTHO05D004248 3.7e-08 61.6 96 39.6
SGA_v2.0_scaffold1G00085 Striga asiatica HOM05D005059 ORTHO05D004248 6.3e-08 60.8 98 37.8
Atru.chr2.2092 Acer truncatum HOM05D022481 ORTHO05D023186 8.2e-08 60.5 97 47.4
Atru.chr2.2076 Acer truncatum HOM05D022481 ORTHO05D023186 1.1e-07 60.1 97 46.4
Ah.14g086980 Amaranthus hybridus HOM05D005059 ORTHO05D004248 1.4e-07 59.7 62 61.3
Glyma.15G085800 Glycine max HOM05D005059 ORTHO05D004248 3.1e-07 58.5 95 43.2
Lalb_Chr18g0054771 Lupinus albus HOM05D005059 ORTHO05D004248 3.1e-07 58.5 75 46.7
DCAR_027979 Daucus carota HOM05D005059 ORTHO05D004248 4.1e-07 58.2 101 38.6
Lalb_Chr15g0086331 Lupinus albus HOM05D005059 ORTHO05D004248 5.3e-07 57.8 99 42.4
AUR62037560 Chenopodium quinoa HOM05D005059 ORTHO05D004248 6.9e-07 57.4 99 42.4
Migut.M01008 Erythranthe guttata HOM05D005059 ORTHO05D004248 9.1e-07 57.0 98 41.8
Gohir.A01G049100 Gossypium hirsutum HOM05D008890 ORTHO05D004248 9.1e-07 57.0 95 43.2
Atru.chr2.2085 Acer truncatum HOM05D022481 ORTHO05D023186 1.2e-06 56.6 97 46.4
EL10Ac4g08366 Beta vulgaris HOM05D005059 ORTHO05D004248 1.5e-06 56.2 64 48.4
Thecc.07G127600 Theobroma cacao HOM05D047023 ORTHO05D044780 1.5e-06 56.2 89 42.7
AUR62019592 Chenopodium quinoa HOM05D005059 ORTHO05D004248 2.0e-06 55.8 99 41.4
Manes.03G100250 Manihot esculenta HOM05D008890 ORTHO05D004248 2.0e-06 55.8 98 45.9
Potri.001G393101 Populus trichocarpa HOM05D008890 ORTHO05D004248 2.6e-06 55.5 94 37.2
BcaB03g13023 Brassica carinata HOM05D009829 ORTHO05D012418 3.4e-06 55.1 87 46.0
BcaC07g38826 Brassica carinata HOM05D009829 ORTHO05D012418 5.9e-06 54.3 88 47.7
Gohir.A01G049300 Gossypium hirsutum HOM05D008890 ORTHO05D004248 5.9e-06 54.3 95 43.2
C08p17660 Brassica napus HOM05D009829 ORTHO05D012418 7.7e-06 53.9 88 47.7
BolC8t49391H Brassica oleracea HOM05D009829 ORTHO05D012418 7.7e-06 53.9 88 47.7
CARHR017460 Cardamine hirsuta HOM05D009829 ORTHO05D012418 7.7e-06 53.9 95 45.3


User provided reference genes

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