Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0396 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.1e-81 306.6 161 100.0
TAR365G0298 Trochodendron aralioides HOM05D000184 ORTHO05D000032 4.3e-81 304.7 161 98.8
TAR627G0382 Trochodendron aralioides HOM05D000184 ORTHO05D000032 4.3e-81 304.7 161 98.8
TAR365G0168 Trochodendron aralioides HOM05D000184 ORTHO05D000032 3.6e-72 275.0 174 87.4
TAR365G1155 Trochodendron aralioides HOM05D000184 ORTHO05D000032 1.5e-70 269.6 143 97.9
TAR457G0001 Trochodendron aralioides HOM05D000184 ORTHO05D000032 9.3e-52 207.2 109 98.2
TAR362G1113 Trochodendron aralioides HOM05D000184 ORTHO05D000032 2.7e-43 179.1 182 60.4
Nn3g19969 Nelumbo nucifera HOM05D000184 ORTHO05D000032 8.7e-42 174.1 182 59.3
Nn1g07862 Nelumbo nucifera HOM05D000184 ORTHO05D000032 4.3e-41 171.8 182 59.3
TAR633G1219 Trochodendron aralioides HOM05D000184 ORTHO05D000032 6.9e-39 164.5 180 58.3
Potri.001G314800 Populus trichocarpa HOM05D000184 ORTHO05D000032 1.1e-36 157.1 137 62.8
Ciclev10005596m.g Citrus clementina HOM05D000184 ORTHO05D000032 2.7e-35 152.5 137 62.0
Sabra16G0199200 Salix brachista HOM05D002843 ORTHO05D003086 3.5e-35 152.1 137 59.9
Potri.017G054800 Populus trichocarpa HOM05D000184 ORTHO05D000032 4.6e-35 151.8 180 52.8
QL06p024540 Quercus lobata HOM05D000184 ORTHO05D000032 6.0e-35 151.4 180 53.3
TWI73G0641 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 1.0e-34 150.6 147 57.8
Cfa014918 Carpinus fangiana HOM05D000184 ORTHO05D000032 1.3e-34 150.2 181 53.6
Atru.chr4.1708 Acer truncatum HOM05D000184 ORTHO05D000032 2.3e-34 149.4 180 52.8
Manes.03G148100 Manihot esculenta HOM05D000184 ORTHO05D000032 3.9e-34 148.7 141 58.9
Prupe.1G007000 Prunus persica HOM05D000184 ORTHO05D000032 6.7e-34 147.9 137 61.3
TAR636G2150 Trochodendron aralioides HOM05D000184 ORTHO05D000032 2.5e-33 146.0 168 58.3
CiPaw.01G121700 Carya illinoinensis HOM05D000184 ORTHO05D000032 3.3e-33 145.6 138 58.0
TWI53G1571 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 4.3e-33 145.2 137 59.9
Sabra17G0048700 Salix brachista HOM05D000184 ORTHO05D000032 5.7e-33 144.8 180 51.1
CiPaw.02G066500 Carya illinoinensis HOM05D000184 ORTHO05D000032 1.3e-32 143.7 138 58.7
RcHm_v2.0_Chr4g0415391 Rosa chinensis HOM05D000184 ORTHO05D000032 1.6e-32 143.3 137 60.6
Dinv29592 Davidia involucrata HOM05D000184 ORTHO05D000032 1.1e-31 140.6 136 60.3
FvH4_4g15780 Fragaria vesca HOM05D000184 ORTHO05D000032 1.8e-31 139.8 134 57.5
FAN12G2351 Fragaria x ananassa HOM05D000184 ORTHO05D000032 1.8e-31 139.8 134 57.5
Aqoxy2G03875 Aquilegia oxysepala HOM05D000184 ORTHO05D000032 2.4e-31 139.4 181 52.5
FAN22G2178 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.4e-31 139.4 134 57.5
FAN17G2338 Fragaria x ananassa HOM05D000184 ORTHO05D000032 4.1e-31 138.7 135 56.3
MD04G1008300 Malus domestica HOM05D000184 ORTHO05D000032 6.9e-31 137.9 135 58.5
Haze_11607 Corylus avellana HOM05D002843 ORTHO05D003086 1.2e-30 137.1 169 53.8
Gorai.005G033900 Gossypium raimondii HOM05D000184 ORTHO05D000032 4.5e-30 135.2 150 54.7
Duzib212G0863 Durio zibethinus HOM05D000184 ORTHO05D000032 7.6e-30 134.4 137 55.5
Actinidia33190 Actinidia chinensis HOM05D000184 ORTHO05D000032 1.7e-29 133.3 136 57.4
Duzib151G0674 Durio zibethinus HOM05D000184 ORTHO05D000032 2.9e-29 132.5 137 56.2
Thecc.04G204700 Theobroma cacao HOM05D000184 ORTHO05D000032 5.0e-29 131.7 130 56.9
Duzib268G0945 Durio zibethinus HOM05D000184 ORTHO05D000032 3.2e-28 129.0 136 55.1
FAN07G1513 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.1e-27 126.3 134 56.0
COL.COLO4_09880 Corchorus olitorius HOM05D000184 ORTHO05D000032 1.8e-26 123.2 114 63.2
Gohir.D02G030600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.8e-26 123.2 136 53.7
Manes.15G053300 Manihot esculenta HOM05D000184 ORTHO05D000032 1.8e-26 123.2 180 46.7
Sc13g0000140 Simmondsia chinensis HOM05D000184 ORTHO05D000032 1.8e-26 123.2 140 52.1
TWI09G0493 Tripterygium wilfordii HOM05D000184 ORTHO05D000032 2.3e-26 122.9 133 54.1
Gohir.D10G142200 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.0e-26 122.5 133 52.6
Gorai.011G158500 Gossypium raimondii HOM05D000184 ORTHO05D000032 3.0e-26 122.5 133 52.6
Actinidia35867 Actinidia chinensis HOM05D000184 ORTHO05D000032 3.9e-26 122.1 138 56.5
Gohir.A10G124000 Gossypium hirsutum HOM05D000184 ORTHO05D000032 8.8e-26 120.9 133 52.6
Cc03_g07780 Coffea canephora HOM05D000184 ORTHO05D000032 1.1e-25 120.6 180 47.2
Eucgr.H00055 Eucalyptus grandis HOM05D000184 ORTHO05D000032 3.3e-25 119.0 177 42.9
Gohir.A02G023300 Gossypium hirsutum HOM05D000184 ORTHO05D000032 3.3e-25 119.0 136 52.9
Duzib268G0666 Durio zibethinus HOM05D000184 ORTHO05D000032 7.4e-25 117.9 162 50.6
vmacro00477 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 7.4e-25 117.9 130 54.6
MELO3C006313.2 Cucumis melo HOM05D000184 ORTHO05D000032 2.8e-24 115.9 180 46.1
ClCG05G003320 Citrullus lanatus HOM05D000184 ORTHO05D000032 1.8e-23 113.2 138 51.4
Rhsim09G0055800 Rhododendron simsii HOM05D000184 ORTHO05D000032 9.1e-23 110.9 128 50.8
Actinidia11413 Actinidia chinensis HOM05D000184 ORTHO05D000032 2.0e-22 109.8 135 51.9
MBI11_g04266_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 2.0e-22 109.8 140 52.1
Hma1.2p1_0187F.1_g082110 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 3.4e-22 109.0 140 50.0
Lj3C414T2 Lonicera japonica HOM05D000184 ORTHO05D000032 7.7e-22 107.8 162 48.1
MSTRG.9818 Avicennia marina HOM05D000184 ORTHO05D000032 1.0e-21 107.5 146 46.6
Hma1.2p1_1382F.1_g279430 Hydrangea macrophylla HOM05D000184 ORTHO05D000032 1.3e-21 107.1 135 54.8
DCAR_024477 Daucus carota HOM05D000184 ORTHO05D000032 2.9e-21 105.9 135 51.1
Sed0003960 Sechium edule HOM05D000184 ORTHO05D000032 8.5e-21 104.4 138 47.8
CsaV3_3G010950 Cucumis sativus L. HOM05D000184 ORTHO05D000032 1.9e-20 103.2 173 45.1
CSS0023963 Camellia sinensis var. sinensis HOM05D000184 ORTHO05D000032 7.2e-20 101.3 115 48.7
PSO357G0670 Papaver somniferum HOM05D000184 ORTHO05D000032 2.1e-19 99.8 139 51.1
PSO170G4726 Papaver somniferum HOM05D000184 ORTHO05D000032 4.7e-19 98.6 176 45.5
CANSAT78G0410 Cannabis sativa HOM05D000184 ORTHO05D000032 1.8e-18 96.7 128 48.4
SalBow8G0958 Salvia bowleyana HOM05D000184 ORTHO05D000032 3.9e-18 95.5 137 43.1
A08p06780 Brassica napus HOM05D000184 ORTHO05D000032 8.8e-18 94.4 140 47.1
BraA08t32696Z Brassica rapa HOM05D000184 ORTHO05D000032 8.8e-18 94.4 140 47.1
ATR1145G045 Amborella trichopoda HOM05D000184 ORTHO05D000032 1.1e-17 94.0 170 40.0
PGSC0003DMG400004567 Solanum tuberosum HOM05D000184 ORTHO05D000032 1.5e-17 93.6 174 42.5
DCAR_030793 Daucus carota HOM05D000184 ORTHO05D000032 2.0e-17 93.2 139 46.0
Oeu018218.3 Olea europaea HOM05D000184 ORTHO05D000032 7.4e-17 91.3 144 47.2
Migut.G00679 Erythranthe guttata HOM05D000184 ORTHO05D000032 1.7e-16 90.1 141 46.8
BolC8t47639H Brassica oleracea HOM05D000184 ORTHO05D000032 2.2e-16 89.7 140 44.3
THA.LOC104808715 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 3.7e-16 89.0 147 44.2
Nn1g01042 Nelumbo nucifera HOM05D000184 ORTHO05D000032 4.8e-16 88.6 127 47.2
CARHR219350 Cardamine hirsuta HOM05D000184 ORTHO05D000032 8.2e-16 87.8 139 44.6
Oeu016735.1 Olea europaea HOM05D000184 ORTHO05D000032 1.1e-15 87.4 135 44.4
DCAR_026609 Daucus carota HOM05D000184 ORTHO05D000032 1.8e-15 86.7 179 39.7
Sopen12g033150 Solanum pennellii HOM05D000184 ORTHO05D000032 2.4e-15 86.3 174 37.4
AL3G39150 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 3.1e-15 85.9 146 45.9
Solyc12g098370.2 Solanum lycopersicum HOM05D000184 ORTHO05D000032 3.1e-15 85.9 174 37.9
BcaB04g17663 Brassica carinata HOM05D000184 ORTHO05D000032 4.1e-15 85.5 129 45.0
HanXRQChr01g0022251 Helianthus annuus HOM05D000184 ORTHO05D000032 4.1e-15 85.5 111 50.5
Nitab4.5_0000898g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 4.1e-15 85.5 129 45.0
Oeu022106.1 Olea europaea HOM05D000184 ORTHO05D000032 4.1e-15 85.5 143 44.1
AT4G13640 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 6.9e-15 84.7 134 47.0
Lj6A558G54 Lonicera japonica HOM05D000184 ORTHO05D000032 9.1e-15 84.3 181 40.3
Peaxi162Scf00047g00522 Petunia axillaris HOM05D000184 ORTHO05D000032 9.1e-15 84.3 130 45.4
Aa31LG8G10760 Aethionema arabicum HOM05D000184 ORTHO05D000032 2.6e-14 82.8 133 47.4
SEGI_24367 Sequoiadendron giganteum HOM05D000184 ORTHO05D000032 3.4e-14 82.4 129 40.3
CAN.G1635.16 Capsicum annuum HOM05D000184 ORTHO05D000032 4.5e-14 82.0 130 43.1
Peaxi162Scf00652g00422 Petunia axillaris HOM05D000184 ORTHO05D000032 5.9e-14 81.6 130 45.4
ECA233G3792 Erigeron canadensis HOM05D000184 ORTHO05D000032 7.7e-14 81.3 114 51.8
Thhalv10025876m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 7.7e-14 81.3 113 50.4
Sp7g11350 Schrenkiella parvula HOM05D000184 ORTHO05D000032 1.0e-13 80.9 128 46.1
Lsat_1_v5_gn_6_60361 Lactuca sativa HOM05D000184 ORTHO05D000032 1.3e-13 80.5 125 50.4
Nitab4.5_0000676g0220 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.3e-13 80.5 154 42.9
THA.LOC104821612 Tarenaya hassleriana HOM05D000184 ORTHO05D000032 5.0e-13 78.6 135 47.4
AL7G42910 Arabidopsis lyrata HOM05D000184 ORTHO05D000032 6.5e-13 78.2 134 45.5
Gohir.A09G205100 Gossypium hirsutum HOM05D000184 ORTHO05D000032 6.5e-13 78.2 116 45.7
Gohir.D09G198800 Gossypium hirsutum HOM05D000184 ORTHO05D000032 1.1e-12 77.4 71 59.2
BcaC07g37345 Brassica carinata HOM05D000184 ORTHO05D000032 1.4e-12 77.0 129 41.9
Nitab4.5_0001416g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 1.9e-12 76.6 129 41.9
PGR142G2963 Punica granatum HOM05D000184 ORTHO05D000032 3.2e-12 75.9 135 43.0
BolC3t17597H Brassica oleracea HOM05D000184 ORTHO05D000032 4.2e-12 75.5 122 47.5
Gorai.006G222400 Gossypium raimondii HOM05D000184 ORTHO05D000032 4.2e-12 75.5 69 59.4
PGSC0003DMG400031299 Solanum tuberosum HOM05D000184 ORTHO05D000032 4.2e-12 75.5 131 42.0
Aa31LG9G4000 Aethionema arabicum HOM05D000184 ORTHO05D000032 5.5e-12 75.1 139 43.9
CAN.G767.40 Capsicum annuum HOM05D000184 ORTHO05D000032 7.2e-12 74.7 173 36.4
BcaC01g03356 Brassica carinata HOM05D000184 ORTHO05D000032 1.6e-11 73.6 136 43.4
BraA01t03231Z Brassica rapa HOM05D002843 ORTHO05D003086 2.1e-11 73.2 131 45.8
C01p39580 Brassica napus HOM05D002843 ORTHO05D003086 2.7e-11 72.8 137 43.8
Carub.0003s2438 Capsella rubella HOM05D000184 ORTHO05D000032 2.7e-11 72.8 135 43.0
CARHR100080 Cardamine hirsuta HOM05D000184 ORTHO05D000032 2.7e-11 72.8 110 48.2
Nitab4.5_0000850g0070 Nicotiana tabacum HOM05D000184 ORTHO05D000032 3.6e-11 72.4 111 43.2
Sp3g21820 Schrenkiella parvula HOM05D000184 ORTHO05D000032 3.6e-11 72.4 110 48.2
Oeu015950.1 Olea europaea HOM05D000184 ORTHO05D000032 4.7e-11 72.0 126 43.7
Solyc09g091880.4 Solanum lycopersicum HOM05D000184 ORTHO05D000032 4.7e-11 72.0 131 40.5
AT3G24120 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 8.0e-11 71.2 135 43.7
Carub.0007s2889 Capsella rubella HOM05D000184 ORTHO05D000032 8.0e-11 71.2 118 48.3
Thhalv10002625m.g Eutrema salsugineum HOM05D000184 ORTHO05D000032 8.0e-11 71.2 135 42.2
A01p31060 Brassica napus HOM05D002843 ORTHO05D003086 1.4e-10 70.5 110 49.1
C08p07880 Brassica napus HOM05D000184 ORTHO05D000032 1.4e-10 70.5 127 40.9
GSVIVG01021072001 Vitis vinifera HOM05D000184 ORTHO05D000032 1.4e-10 70.5 58 67.2
BolC7t41771H Brassica oleracea HOM05D002843 ORTHO05D003086 2.3e-10 69.7 121 44.6
Lsat_1_v5_gn_1_72761 Lactuca sativa HOM05D000184 ORTHO05D000032 2.3e-10 69.7 112 45.5
BolC1t03907H Brassica oleracea HOM05D002843 ORTHO05D003086 3.0e-10 69.3 110 48.2
Sopen09g034770 Solanum pennellii HOM05D000184 ORTHO05D000032 5.2e-10 68.6 132 40.9
BcaB04g20401 Brassica carinata HOM05D000184 ORTHO05D000032 8.8e-10 67.8 110 48.2
BcaC06g35621 Brassica carinata HOM05D000184 ORTHO05D000032 8.8e-10 67.8 121 43.8
C07p12860 Brassica napus HOM05D002843 ORTHO05D003086 8.8e-10 67.8 121 43.8
BcaB06g26587 Brassica carinata HOM05D000184 ORTHO05D000032 1.5e-09 67.0 122 44.3
HanXRQChr02g0058891 Helianthus annuus HOM05D000184 ORTHO05D000032 1.5e-09 67.0 110 47.3
A07p08290 Brassica napus HOM05D002843 ORTHO05D003086 4.4e-09 65.5 121 44.6
ECA248G1259 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.4e-09 65.5 81 50.6
BraA03t13481Z Brassica rapa HOM05D000184 ORTHO05D000032 5.7e-09 65.1 125 43.2
BcaB03g14605 Brassica carinata HOM05D000184 ORTHO05D000032 7.4e-09 64.7 138 40.6
A03p43430 Brassica napus HOM05D000184 ORTHO05D000032 7.4e-09 64.7 125 43.2
C03p53380 Brassica napus HOM05D000184 ORTHO05D000032 9.7e-09 64.3 111 45.9
Oeu045307.1 Olea europaea HOM05D000184 ORTHO05D000032 9.7e-09 64.3 127 42.5
Duzib177G0153 Durio zibethinus HOM05D000184 ORTHO05D000032 2.2e-08 63.2 72 52.8
FAN23G2232 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.8e-08 62.8 58 62.1
FAN26G2253 Fragaria x ananassa HOM05D000184 ORTHO05D000032 2.8e-08 62.8 58 62.1
Rhsim02G0057000 Rhododendron simsii HOM05D000184 ORTHO05D000032 2.8e-08 62.8 69 50.7
vmacro15527 Vaccinium macrocarpon HOM05D000184 ORTHO05D000032 2.8e-08 62.8 68 52.9
MBI19_g09313_MAGBIO Magnolia biondii HOM05D000184 ORTHO05D000032 3.7e-08 62.4 128 37.5
Sc13g0002730 Simmondsia chinensis HOM05D000184 ORTHO05D000032 6.3e-08 61.6 78 48.7
AUR62024357 Chenopodium quinoa HOM05D000184 ORTHO05D000032 1.1e-07 60.8 56 62.5
GSVIVG01033381001 Vitis vinifera HOM05D000184 ORTHO05D000032 1.1e-07 60.8 58 60.3
EL10Ac3g06975 Beta vulgaris HOM05D000184 ORTHO05D000032 2.4e-07 59.7 72 52.8
Nitab4.5_0001933g0010 Nicotiana tabacum HOM05D000184 ORTHO05D000032 3.1e-07 59.3 59 55.9
HanXRQChr03g0090381 Helianthus annuus HOM05D000184 ORTHO05D000032 5.3e-07 58.5 60 53.3
AUR62025961 Chenopodium quinoa HOM05D000184 ORTHO05D000032 7.0e-07 58.2 98 42.9
Glyma.12G089100 Glycine max HOM05D000184 ORTHO05D000032 7.0e-07 58.2 100 41.0
Gohir.D08G230600 Gossypium hirsutum HOM05D000184 ORTHO05D000032 7.0e-07 58.2 102 42.2
Nitab4.5_0003610g0020 Nicotiana tabacum HOM05D000184 ORTHO05D000032 2.0e-06 56.6 67 50.7
Glyma.02G070900 Glycine max HOM05D000184 ORTHO05D000032 2.6e-06 56.2 101 38.6
Ah.04g152150 Amaranthus hybridus HOM05D000794 ORTHO05D000032 3.5e-06 55.8 94 42.6
CARHR194820 Cardamine hirsuta HOM05D000184 ORTHO05D000032 3.5e-06 55.8 95 41.1
Sp3g03010 Schrenkiella parvula HOM05D000184 ORTHO05D000032 4.5e-06 55.5 56 60.7
Solyc10g083340.3 Solanum lycopersicum HOM05D000184 ORTHO05D000032 4.5e-06 55.5 60 56.7
AT5G18240 Arabidopsis thaliana HOM05D000184 ORTHO05D000032 5.9e-06 55.1 56 60.7


User provided reference genes

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