Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0331 Trochodendron aralioides HOM05D004535 ORTHO05D005341 0.0e+00 3588.9 1815 100.0
GSVIVG01014769001 Vitis vinifera HOM05D004535 ORTHO05D005341 0.0e+00 3019.2 1816 83.4
Dinv19653 Davidia involucrata HOM05D004535 ORTHO05D005341 0.0e+00 3011.1 1821 83.0
Atru.chr2.3782 Acer truncatum HOM05D004535 ORTHO05D005341 0.0e+00 2922.5 1817 80.1
Prupe.6G032900 Prunus persica HOM05D004535 ORTHO05D005341 0.0e+00 2912.9 1816 79.2
Hma1.2p1_0193F.1_g084240 Hydrangea macrophylla HOM05D004535 ORTHO05D005341 0.0e+00 2910.6 1817 79.6
CiPaw.11G209600 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2892.1 1819 79.8
Ciclev10007234m.g Citrus clementina HOM05D004535 ORTHO05D005341 0.0e+00 2887.8 1823 79.4
CSS0018371 Camellia sinensis var. sinensis HOM05D004535 ORTHO05D005341 0.0e+00 2881.3 1818 79.4
MD11G1042000 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2877.8 1816 78.6
Rhsim04G0008600 Rhododendron simsii HOM05D004535 ORTHO05D005341 0.0e+00 2870.1 1835 78.3
Aqoxy4G02281 Aquilegia oxysepala HOM05D004535 ORTHO05D005341 0.0e+00 2864.7 1816 78.6
Potri.001G470600 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 2860.5 1818 78.1
MD03G1040600 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 2845.5 1816 77.9
Manes.01G005500 Manihot esculenta HOM05D004535 ORTHO05D005341 0.0e+00 2841.6 1818 78.3
RcHm_v2.0_Chr5g0075021 Rosa chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2841.2 1820 77.5
TWI38G2299 Tripterygium wilfordii HOM05D004535 ORTHO05D005341 0.0e+00 2838.9 1818 77.9
FAN16G2454 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2835.8 1820 77.4
FAN11G1653 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2832.4 1820 77.3
Thecc.07G003100 Theobroma cacao HOM05D004535 ORTHO05D005341 0.0e+00 2829.3 1764 80.1
Lj1C898T24 Lonicera japonica HOM05D004535 ORTHO05D005341 0.0e+00 2827.4 1836 77.8
Gorai.009G454100 Gossypium raimondii HOM05D004535 ORTHO05D005341 0.0e+00 2827.0 1804 78.5
FAN25G2892 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2824.7 1820 77.2
FAN21G2952 Fragaria x ananassa HOM05D004535 ORTHO05D005341 0.0e+00 2821.2 1820 77.1
vmacro09603 Vaccinium macrocarpon HOM05D004535 ORTHO05D005341 0.0e+00 2815.8 1926 74.3
PSO210G5731 Papaver somniferum HOM05D004535 ORTHO05D005341 0.0e+00 2811.6 1816 77.4
CANSAT11G1644 Cannabis sativa HOM05D004535 ORTHO05D005341 0.0e+00 2801.2 1819 76.9
Haze_09903 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2791.1 1856 76.9
QL08p000781 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2778.0 1772 78.5
Sabra11G0138700 Salix brachista HOM05D004535 ORTHO05D005341 0.0e+00 2771.9 1973 71.6
Gohir.D05G387450 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2766.9 1804 77.4
MBI15_g37116_MAGBIO Magnolia biondii HOM05D004535 ORTHO05D005341 0.0e+00 2757.6 1790 77.5
PGR083G0052 Punica granatum HOM05D004535 ORTHO05D005341 0.0e+00 2730.3 1816 74.2
Duzib213G0320 Durio zibethinus HOM05D004535 ORTHO05D005341 0.0e+00 2729.9 1818 76.0
Eucgr.F02001 Eucalyptus grandis HOM05D004535 ORTHO05D005341 0.0e+00 2723.0 1817 74.1
FvH4_3g41830 Fragaria vesca HOM05D004535 ORTHO05D005341 0.0e+00 2720.3 1757 76.8
Glyma.18G071500 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2719.5 1819 74.1
Glyma.08G336400 Glycine max HOM05D004535 ORTHO05D005341 0.0e+00 2718.3 1820 74.1
Psat5g164120 Pisum sativum HOM05D004535 ORTHO05D005341 0.0e+00 2714.1 1821 74.2
Medtr3g461520 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2706.4 1820 73.8
Nn1g08312 Nelumbo nucifera HOM05D004535 ORTHO05D005341 0.0e+00 2705.2 1624 83.4
Cc05_g15580 Coffea canephora HOM05D004535 ORTHO05D005341 0.0e+00 2700.6 1822 74.2
Lj6g0015552 Lotus japonicus HOM05D004535 ORTHO05D005341 0.0e+00 2700.2 1820 73.3
Solyc07g066030.4 Solanum lycopersicum HOM05D004535 ORTHO05D005341 0.0e+00 2697.9 1816 73.7
Sopen07g034220 Solanum pennellii HOM05D004535 ORTHO05D005341 0.0e+00 2696.8 1816 73.7
Lalb_Chr20g0115261 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2692.5 1820 73.8
Lalb_Chr18g0050431 Lupinus albus HOM05D004535 ORTHO05D005341 0.0e+00 2691.8 1820 73.6
Phvul.006G061700 Phaseolus vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2684.8 1821 73.3
HanXRQChr03g0079281 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2681.7 1819 73.2
TPR.G14720 Trifolium pratense HOM05D004535 ORTHO05D005341 0.0e+00 2677.5 1819 73.1
Sed0018073 Sechium edule HOM05D004535 ORTHO05D005341 0.0e+00 2672.9 1818 73.0
ClCG10G004180 Citrullus lanatus HOM05D004535 ORTHO05D005341 0.0e+00 2660.6 1830 72.8
Migut.M01591 Erythranthe guttata HOM05D004535 ORTHO05D005341 0.0e+00 2655.9 1818 73.2
MELO3C014086.2 Cucumis melo HOM05D004535 ORTHO05D005341 0.0e+00 2644.0 1818 72.6
arahy.Tifrunner.gnm1.ann1.DDNH16 Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2643.2 1902 70.2
ECA240G2049 Erigeron canadensis HOM05D004535 ORTHO05D005341 0.0e+00 2641.7 1817 72.4
Thhalv10019881m.g Eutrema salsugineum HOM05D004535 ORTHO05D005341 0.0e+00 2632.1 1820 72.3
AL3G25150 Arabidopsis lyrata HOM05D004535 ORTHO05D005341 0.0e+00 2631.7 1821 72.1
BcaB04g18753 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2630.5 1820 72.2
Sc20g0000040 Simmondsia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2630.5 1818 72.5
Gohir.A04G001901 Gossypium hirsutum HOM05D004535 ORTHO05D005341 0.0e+00 2630.1 1675 79.1
CsaV3_3G003990 Cucumis sativus L. HOM05D004535 ORTHO05D005341 0.0e+00 2627.8 1818 72.0
THA.LOC104822705 Tarenaya hassleriana HOM05D004535 ORTHO05D005341 0.0e+00 2617.4 1818 71.6
BraA03t12967Z Brassica rapa HOM05D004535 ORTHO05D005341 0.0e+00 2612.4 1820 71.8
A03p38140 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2610.5 1820 71.8
BolC3t16899H Brassica oleracea HOM05D004535 ORTHO05D005341 0.0e+00 2608.6 1821 71.8
Aa31LG8G550 Aethionema arabicum HOM05D004535 ORTHO05D005341 0.0e+00 2608.2 1818 71.4
Carub.0003s1271 Capsella rubella HOM05D004535 ORTHO05D005341 0.0e+00 2607.8 1819 71.6
BcaC01g03999 Brassica carinata HOM05D004535 ORTHO05D005341 0.0e+00 2606.2 1820 71.8
AUR62035634 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2604.7 1821 71.7
EL10Ac4g07499 Beta vulgaris HOM05D004535 ORTHO05D005341 0.0e+00 2603.5 1813 71.4
AT3G13330 Arabidopsis thaliana HOM05D004535 ORTHO05D005341 0.0e+00 2602.8 1821 71.6
C03p46300 Brassica napus HOM05D004535 ORTHO05D005341 0.0e+00 2600.1 1820 71.7
VMungo0540G2510 Vigna mungo HOM05D004535 ORTHO05D005341 0.0e+00 2599.7 1765 73.4
MSTRG.15824 Avicennia marina HOM05D004535 ORTHO05D005341 0.0e+00 2599.3 1817 71.3
AUR62017172 Chenopodium quinoa HOM05D004535 ORTHO05D005341 0.0e+00 2596.6 1833 71.0
Sp3g11530 Schrenkiella parvula HOM05D004535 ORTHO05D005341 0.0e+00 2596.6 1820 71.3
Oeu013013.2 Olea europaea HOM05D004535 ORTHO05D005341 0.0e+00 2596.2 1892 69.8
CARHR087940 Cardamine hirsuta HOM05D004535 ORTHO05D005341 0.0e+00 2591.2 1821 71.5
Lsat_1_v5_gn_9_89621 Lactuca sativa HOM05D004535 ORTHO05D005341 0.0e+00 2591.2 1813 71.9
Nitab4.5_0001303g0050 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2583.1 1802 71.7
SalBow8G3417 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2568.5 1844 70.1
QL08p000755 Quercus lobata HOM05D004535 ORTHO05D005341 0.0e+00 2564.6 1945 67.8
HanXRQChr13g0409231 Helianthus annuus HOM05D004535 ORTHO05D005341 0.0e+00 2553.9 1816 70.6
Peaxi162Scf00232g00530 Petunia axillaris HOM05D004535 ORTHO05D005341 0.0e+00 2523.0 1834 70.0
SalBow8G2487 Salvia bowleyana HOM05D004535 ORTHO05D005341 0.0e+00 2510.7 1824 69.3
DCAR_013765 Daucus carota HOM05D004535 ORTHO05D005341 0.0e+00 2503.8 1815 69.6
Hund22978 Selenicereus undatus HOM05D004535 ORTHO05D005341 0.0e+00 2494.9 1817 69.6
Medtr3g461500 Medicago truncatula HOM05D004535 ORTHO05D005341 0.0e+00 2490.7 1855 68.1
ATR0751G071 Amborella trichopoda HOM05D004535 ORTHO05D005341 0.0e+00 2483.8 1819 68.6
HPP92_018915 Vanilla planifolia HOM05D004535 ORTHO05D005341 0.0e+00 2468.7 1826 67.7
Haze_09904 Corylus avellana HOM05D004535 ORTHO05D005341 0.0e+00 2468.0 1904 67.1
Actinidia03667 Actinidia chinensis HOM05D004535 ORTHO05D005341 0.0e+00 2441.4 1563 79.3
Ah.06g180940 Amaranthus hybridus HOM05D004535 ORTHO05D005341 0.0e+00 2429.8 1839 66.5
Nitab4.5_0000152g0130 Nicotiana tabacum HOM05D004535 ORTHO05D005341 0.0e+00 2351.6 1650 72.0
CiPaw.12G142100 Carya illinoinensis HOM05D004535 ORTHO05D005341 0.0e+00 2270.7 1679 68.4
Cpa.g.sc12.80 Carica papaya HOM05D004535 ORTHO05D005341 0.0e+00 2247.2 1741 68.1
Zm00001eb281130 Zea mays HOM05D004535 ORTHO05D005341 0.0e+00 2236.8 1816 62.0
Ca_14867_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 0.0e+00 2215.3 1517 72.6
arahy.Tifrunner.gnm1.ann1.HJC4WF Arachis hypogaea HOM05D004535 ORTHO05D005341 0.0e+00 2149.4 1440 74.1
CDE05G3236 Ceratophyllum demersum HOM05D004535 ORTHO05D005341 0.0e+00 1914.8 1467 67.1
MD00G1206400 Malus domestica HOM05D004535 ORTHO05D005341 0.0e+00 1907.1 1251 75.6
Potri.011G167700 Populus trichocarpa HOM05D004535 ORTHO05D005341 0.0e+00 1833.9 1146 78.0
unitig_699.g19598 Utricularia gibba HOM05D004535 ORTHO05D005341 0.0e+00 1751.5 1817 52.4
Pp3c20_11540 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1448.7 1861 43.4
AagrBONN_evm.TU.Sc2ySwM_228.5886 Anthoceros agrestis HOM05D004535 ORTHO05D005341 0.0e+00 1447.2 1861 43.8
Mapoly0071s0029 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1437.2 1926 41.8
PGSC0003DMG401022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 0.0e+00 1414.4 944 73.4
Mapoly0069s0005 Marchantia polymorpha HOM05D004535 ORTHO05D005341 0.0e+00 1384.4 1872 41.0
Pp3c15_5520 Physcomitrium patens HOM05D004535 ORTHO05D005341 0.0e+00 1287.3 1841 40.2
CAN.G623.63 Capsicum annuum HOM05D004535 ORTHO05D005341 0.0e+00 1259.2 863 73.7
SMO184G0002 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1237.6 1863 39.3
SMO340G0109 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1192.9 1840 38.2
SMO239G0001 Selaginella moellendorffii HOM05D004535 ORTHO05D005341 0.0e+00 1102.4 1841 36.3
CAN.G623.64 Capsicum annuum HOM05D004535 ORTHO05D005341 1.5e-302 1043.9 945 59.5
Ca_14861_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 8.8e-300 1034.6 713 72.2
CBR_g24134 Chara braunii HOM05D004535 ORTHO05D005341 2.2e-282 976.9 1969 32.6
COL.COLO4_07778 Corchorus olitorius HOM05D004535 ORTHO05D005341 5.8e-267 925.6 1170 47.9
Os06g0301300 Oryza sativa ssp. japonica HOM05D004535 ORTHO05D005341 2.4e-265 920.2 692 64.9
Potri.011G167650 Populus trichocarpa HOM05D004535 ORTHO05D005341 9.7e-214 748.8 505 74.9
Actinidia00829 Actinidia chinensis HOM05D004535 ORTHO05D005341 5.0e-186 656.8 635 60.5
SEGI_13123 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 3.9e-146 524.2 458 56.1
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 1.0e-138 499.6 637 48.4
Ca_14860_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 6.0e-131 473.8 339 71.4
MCO11G531 Micromonas commoda HOM05D004535 ORTHO05D005341 8.7e-122 443.4 1923 25.0
SEGI_38328 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.3e-121 440.3 466 49.6
VMungo0540G1109 Vigna mungo HOM05D004535 ORTHO05D005341 2.1e-115 422.2 316 66.1
Actinidia00827 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.1e-108 399.8 301 67.8
MD00G1206600 Malus domestica HOM05D004535 ORTHO05D005341 8.7e-106 390.2 231 78.4
MD00G1206500 Malus domestica HOM05D004535 ORTHO05D005341 1.7e-101 375.9 250 80.4
VMungo1127G2045 Vigna mungo HOM05D004535 ORTHO05D005341 2.2e-101 375.6 273 69.6
SEGI_32129 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 5.3e-87 327.8 359 53.8
Actinidia03668 Actinidia chinensis HOM05D004535 ORTHO05D005341 3.6e-83 315.1 240 63.8
Nn1g08306 Nelumbo nucifera HOM05D004535 ORTHO05D005341 4.4e-81 308.1 167 86.2
PRCOL_00006556 Prasinoderma coloniale HOM05D004535 ORTHO05D005341 6.3e-80 304.3 1687 22.9
arahy.Tifrunner.gnm1.ann1.P6R29M Arachis hypogaea HOM05D004535 ORTHO05D005341 5.2e-74 284.6 349 49.3
SEGI_15666 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 7.5e-41 174.5 138 65.2
Cpa.g.sc12.82 Carica papaya HOM05D004535 ORTHO05D005341 2.7e-38 166.0 100 83.0
Cfa027001 Carpinus fangiana HOM05D004535 ORTHO05D005341 1.5e-33 150.2 1992 20.0
Actinidia00828 Actinidia chinensis HOM05D004535 ORTHO05D005341 1.9e-31 143.3 210 44.3
Cre14.g628702 Chlamydomonas reinhardtii HOM05D004535 ORTHO05D005341 4.6e-30 138.7 651 24.0
arahy.Tifrunner.gnm1.ann1.A7P7U5 Arachis hypogaea HOM05D004535 ORTHO05D005341 1.4e-26 127.1 93 75.3
PSO541G1144 Papaver somniferum HOM05D004535 ORTHO05D005341 5.8e-25 121.7 74 75.7
Ca_31034_v3 Cicer arietinum L. HOM05D004535 ORTHO05D005341 1.1e-23 117.5 75 77.3
arahy.Tifrunner.gnm1.ann1.6S2B7N Arachis hypogaea HOM05D012221 ORTHO05D005341 1.4e-23 117.1 121 57.9
Lsat_1_v5_gn_0_5420 Lactuca sativa HOM05D004535 ORTHO05D005341 1.2e-22 114.0 75 68.0
arahy.Tifrunner.gnm1.ann1.EHT35G Arachis hypogaea HOM05D004535 ORTHO05D005341 1.0e-21 110.9 111 57.7
arahy.Tifrunner.gnm1.ann1.QBA8JR Arachis hypogaea HOM05D004535 ORTHO05D005341 3.9e-21 109.0 163 44.8
Psat5g106440 Pisum sativum HOM05D004535 ORTHO05D005341 8.6e-21 107.8 65 81.5
PGSC0003DMG402022150 Solanum tuberosum HOM05D004535 ORTHO05D005341 1.1e-20 107.5 96 58.3
VMungo1215G1327 Vigna mungo HOM05D004535 ORTHO05D005341 5.8e-17 95.1 72 69.4
SEGI_18126 Sequoiadendron giganteum HOM05D004535 ORTHO05D005341 1.1e-15 90.9 73 52.1
arahy.Tifrunner.gnm1.ann1.HQ6FCP Arachis hypogaea HOM05D004535 ORTHO05D005341 4.6e-14 85.5 170 38.8
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 6.2e-11 75.1 72 56.9
VMungo0110G0001 Vigna mungo HOM05D004535 ORTHO05D005341 1.1e-10 74.3 63 54.0
Psat4g112520 Pisum sativum HOM05D004535 ORTHO05D005341 1.5e-09 70.5 45 68.9


User provided reference genes

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