Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 3.4e-49 198.4 126 100.0
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 3.2e-15 85.5 56 78.6
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 3.2e-15 85.5 55 81.8
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.1e-14 82.8 87 59.8
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 4.6e-14 81.6 58 75.9
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.7e-13 79.7 56 80.4
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 2.3e-13 79.3 58 69.0
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 2.3e-13 79.3 86 46.5
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 3.0e-13 79.0 87 56.3
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.1e-13 78.2 86 57.0
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 5.1e-13 78.2 86 57.0
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.5e-12 76.6 89 58.4
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 1.5e-12 76.6 55 76.4
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.5e-12 76.6 54 75.9
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.5e-12 75.9 57 75.4
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 3.3e-12 75.5 56 73.2
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 3.3e-12 75.5 90 57.8
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.3e-12 75.1 53 77.4
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 5.6e-12 74.7 92 54.3
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 5.6e-12 74.7 92 54.3
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 7.4e-12 74.3 89 57.3
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 7.4e-12 74.3 52 75.0
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.4e-12 74.3 54 75.9
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.3e-11 73.6 55 72.7
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.6e-11 73.2 87 51.7
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 3.6e-11 72.0 89 55.1
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 3.6e-11 72.0 59 72.9
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 4.8e-11 71.6 57 75.4
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 4.8e-11 71.6 87 54.0
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 6.2e-11 71.2 55 70.9
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.1e-10 70.5 57 75.4
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 1.1e-10 70.5 57 75.4
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.4e-10 70.1 55 74.5
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 1.4e-10 70.1 56 73.2
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 1.4e-10 70.1 56 69.6
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.8e-10 69.7 56 73.2
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.8e-10 69.7 52 75.0
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 2.4e-10 69.3 58 74.1
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 2.4e-10 69.3 87 52.9
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.1e-10 68.9 88 52.3
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 3.1e-10 68.9 57 73.7
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.0e-10 68.6 54 72.2
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 4.0e-10 68.6 52 71.2
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 4.0e-10 68.6 52 76.9
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 6.9e-10 67.8 57 70.2
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 6.9e-10 67.8 57 63.2
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 6.9e-10 67.8 56 75.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 9.0e-10 67.4 54 72.2
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.2e-09 67.0 86 50.0
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 1.2e-09 67.0 85 51.8
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.2e-09 67.0 54 72.2
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-09 67.0 55 72.7
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-09 67.0 55 72.7
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 1.2e-09 67.0 54 70.4
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.2e-09 67.0 85 50.6
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 1.5e-09 66.6 53 73.6
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 1.5e-09 66.6 53 73.6
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 3.4e-09 65.5 56 67.9
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 4.5e-09 65.1 79 48.1
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 4.5e-09 65.1 53 71.7
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 5.8e-09 64.7 56 69.6
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 5.8e-09 64.7 55 74.5
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 5.8e-09 64.7 89 48.3
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 7.6e-09 64.3 55 67.3
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 7.6e-09 64.3 56 67.9
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.6e-09 64.3 52 71.2
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 7.6e-09 64.3 52 71.2
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 7.6e-09 64.3 54 68.5
Rhsim06G0138300 Rhododendron simsii HOM05D002385 ORTHO05D002245 7.6e-09 64.3 56 66.1
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 7.6e-09 64.3 54 68.5
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 7.6e-09 64.3 54 70.4
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 9.9e-09 63.9 56 64.3
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 9.9e-09 63.9 56 64.3
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 2.2e-08 62.8 56 60.7
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 2.2e-08 62.8 52 69.2
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.2e-08 62.8 56 60.7
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.2e-08 62.8 55 63.6
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 2.2e-08 62.8 55 63.6
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 2.9e-08 62.4 87 44.8
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.8e-08 62.0 85 41.2
CiPaw.15G117700 Carya illinoinensis HOM05D019240 ORTHO05D002245 3.8e-08 62.0 56 55.4
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 3.8e-08 62.0 56 69.6
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 3.8e-08 62.0 52 67.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 4.9e-08 61.6 58 56.9
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 4.9e-08 61.6 53 66.0
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 6.4e-08 61.2 57 70.2
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 6.4e-08 61.2 55 56.4
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 8.4e-08 60.8 52 69.2
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 8.4e-08 60.8 53 64.2
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 8.4e-08 60.8 57 66.7
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 8.4e-08 60.8 54 68.5
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.1e-07 60.5 53 67.9
QL04p073225 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-07 60.5 86 41.9
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 1.1e-07 60.5 55 69.1
Cfa023570 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.4e-07 60.1 41 75.6
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.4e-07 60.1 57 68.4
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-07 60.1 57 66.7
Eucgr.E01879 Eucalyptus grandis HOM05D002385 ORTHO05D002245 1.9e-07 59.7 56 60.7
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 1.9e-07 59.7 57 50.9
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-07 59.7 54 66.7
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-07 59.7 56 66.1
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 2.4e-07 59.3 55 63.6
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 2.4e-07 59.3 55 63.6
Manes.11G006500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.2e-07 58.9 89 52.8
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.2e-07 58.9 85 40.0
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 3.2e-07 58.9 61 60.7
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 4.2e-07 58.5 55 52.7
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 4.2e-07 58.5 51 70.6
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 5.5e-07 58.2 54 64.8
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 5.5e-07 58.2 54 68.5
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 5.5e-07 58.2 50 70.0
Duzib235G0963 Durio zibethinus HOM05D014462 ORTHO05D002245 7.1e-07 57.8 44 61.4
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 7.1e-07 57.8 56 66.1
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 9.3e-07 57.4 54 64.8
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.2e-06 57.0 54 63.0
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.2e-06 57.0 54 63.0
CiPaw.11G059900 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.2e-06 57.0 54 53.7
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.2e-06 57.0 54 64.8
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 1.2e-06 57.0 52 69.2
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-06 57.0 55 61.8
FAN02G1107 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.6e-06 56.6 44 65.9
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 1.6e-06 56.6 58 69.0
Thecc.07G152000 Theobroma cacao HOM05D021429 ORTHO05D022417 1.6e-06 56.6 47 53.2
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.1e-06 56.2 49 69.4
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 2.1e-06 56.2 53 64.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 2.1e-06 56.2 57 64.9
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 2.1e-06 56.2 53 52.8
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 2.7e-06 55.8 55 61.8
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 64.3
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 64.3
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.7e-06 55.8 56 64.3
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.7e-06 55.8 55 58.2
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.7e-06 55.8 52 65.4
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 2.7e-06 55.8 55 65.5
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.5e-06 55.5 56 64.3
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 3.5e-06 55.5 54 68.5
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 3.5e-06 55.5 48 62.5
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 3.5e-06 55.5 90 44.4
TAR629G3231 Trochodendron aralioides HOM05D002623 ORTHO05D002826 4.6e-06 55.1 38 71.1
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 6.0e-06 54.7 55 50.9
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 6.0e-06 54.7 55 50.9
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 6.0e-06 54.7 49 71.4
Medtr3g081140 Medicago truncatula HOM05D002385 ORTHO05D002245 6.0e-06 54.7 62 61.3
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 6.0e-06 54.7 54 64.8
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 6.0e-06 54.7 54 64.8
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 7.9e-06 54.3 53 54.7
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 7.9e-06 54.3 53 54.7
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 7.9e-06 54.3 55 65.5
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 7.9e-06 54.3 53 62.3
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 7.9e-06 54.3 57 64.9


User provided reference genes

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