Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 5.4e-120 434.5 243 100.0
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.4e-74 282.3 243 72.0
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.4e-51 207.2 215 66.0
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.5e-32 144.1 235 48.9
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 1.5e-32 144.1 235 48.9
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 1.2e-31 141.0 250 48.8
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 1.2e-31 141.0 248 47.2
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 3.6e-31 139.4 204 53.9
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.4e-29 132.9 239 45.6
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 7.5e-29 131.7 210 49.0
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 7.0e-27 125.2 247 43.3
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 7.0e-27 125.2 242 45.0
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.7e-26 123.2 245 43.7
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 3.5e-26 122.9 206 44.7
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 1.3e-25 120.9 266 45.1
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 1.3e-25 120.9 238 43.7
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.3e-25 120.9 223 44.8
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.3e-25 120.9 265 42.3
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 3.8e-25 119.4 209 47.8
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 6.6e-25 118.6 248 43.5
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 1.2e-23 114.4 246 42.7
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 1.2e-23 114.4 251 41.8
Dinv23691 Davidia involucrata HOM05D009304 ORTHO05D003109 1.6e-23 114.0 193 45.6
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 2.8e-23 113.2 214 45.8
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 3.6e-23 112.8 241 40.7
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 4.7e-23 112.5 208 49.0
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 1.0e-22 111.3 164 54.3
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 1.8e-22 110.5 207 47.8
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.3e-22 110.2 212 47.2
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 4.0e-22 109.4 192 49.0
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 6.8e-22 108.6 269 37.5
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 6.8e-22 108.6 202 46.5
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 8.9e-22 108.2 283 38.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 1.2e-21 107.8 242 43.0
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 2.6e-21 106.7 211 41.7
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 1.3e-20 104.4 190 47.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.3e-20 104.4 194 47.4
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 2.2e-20 103.6 274 42.3
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.5e-18 96.3 230 38.7
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 3.5e-18 96.3 230 38.7
Dinv01395 Davidia involucrata HOM05D009304 ORTHO05D003109 4.5e-18 95.9 217 42.4
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 1.7e-17 94.0 211 47.9
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.9e-17 92.8 206 42.7
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 5.0e-17 92.4 250 38.0
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 8.6e-17 91.7 199 44.2
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 8.6e-17 91.7 236 36.4
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 8.6e-17 91.7 221 44.3
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 8.6e-17 91.7 211 39.8
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 1.1e-16 91.3 199 45.2
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 1.5e-16 90.9 203 40.9
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.5e-16 90.9 255 37.6
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 1.9e-16 90.5 206 42.2
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 1.9e-16 90.5 195 39.0
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.5e-16 90.1 233 41.6
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 2.5e-16 90.1 273 38.8
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 2.5e-16 90.1 281 39.5
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 5.6e-16 89.0 243 39.1
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 7.3e-16 88.6 238 39.1
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 7.3e-16 88.6 208 40.9
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 9.5e-16 88.2 211 40.3
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 1.6e-15 87.4 200 43.0
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.1e-15 87.0 201 44.8
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 2.8e-15 86.7 233 42.1
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 2.8e-15 86.7 203 45.3
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.8e-15 86.7 272 37.5
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 3.6e-15 86.3 279 36.2
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 3.6e-15 86.3 227 39.2
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 3.6e-15 86.3 200 42.5
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 4.7e-15 85.9 197 43.7
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.1e-15 85.5 203 44.8
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 8.0e-15 85.1 221 42.5
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 8.0e-15 85.1 241 39.8
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 8.0e-15 85.1 228 38.6
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.0e-14 84.7 223 36.8
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.4e-14 84.3 217 37.8
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 1.4e-14 84.3 200 42.0
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 1.8e-14 84.0 227 40.5
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 2.3e-14 83.6 203 44.8
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.1e-14 83.2 274 37.2
Ca_20682_v3 Cicer arietinum L. HOM05D010177 ORTHO05D003109 4.0e-14 82.8 255 32.2
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 5.2e-14 82.4 275 37.1
Actinidia11074 Actinidia chinensis HOM05D002331 ORTHO05D003109 6.8e-14 82.0 254 37.0
CDE04G0293 Ceratophyllum demersum HOM05D004919 ORTHO05D005994 6.8e-14 82.0 226 35.8
Hma1.2p1_0875F.1_g231510 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 6.8e-14 82.0 225 40.4
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 8.9e-14 81.6 244 37.3
Nn1g03959 Nelumbo nucifera HOM05D004441 ORTHO05D003109 1.2e-13 81.3 103 51.5
Migut.M01162 Erythranthe guttata HOM05D004441 ORTHO05D003109 1.5e-13 80.9 200 40.0
FAN09G1981 Fragaria x ananassa HOM05D010652 ORTHO05D003109 1.5e-13 80.9 288 34.4
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.5e-13 80.9 200 41.0
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 3.4e-13 79.7 285 33.0
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 4.4e-13 79.3 214 36.4
Hma1.2p1_0835F.1_g225850 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-13 79.3 169 45.0
Hma1.2p1_0835F.1_g225855 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-13 79.3 169 45.0
PGR042G0321 Punica granatum HOM05D004441 ORTHO05D003109 5.8e-13 79.0 223 40.4
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 7.5e-13 78.6 212 37.3
Manes.13G149800 Manihot esculenta HOM05D010652 ORTHO05D003109 9.8e-13 78.2 253 33.6
Lalb_Chr19g0135401 Lupinus albus HOM05D010177 ORTHO05D003109 1.7e-12 77.4 241 33.6
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 2.2e-12 77.0 243 34.6
FAN14G1127 Fragaria x ananassa HOM05D010652 ORTHO05D003109 2.9e-12 76.6 220 35.9
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.9e-12 75.9 226 35.8
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 6.4e-12 75.5 239 34.3
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 6.4e-12 75.5 239 34.3
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 8.3e-12 75.1 209 37.8
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 2.4e-11 73.6 250 29.2
ClCG02G001220 Citrullus lanatus HOM05D032711 ORTHO05D003109 4.1e-11 72.8 208 33.2
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 5.4e-11 72.4 204 41.2
Lsat_1_v5_gn_4_70241 Lactuca sativa HOM05D009304 ORTHO05D003109 7.0e-11 72.0 212 38.2
Solyc01g106180.3 Solanum lycopersicum HOM05D009304 ORTHO05D003109 9.2e-11 71.6 180 38.3
CsaV3_7G004220 Cucumis sativus L. HOM05D032711 ORTHO05D003109 1.2e-10 71.2 203 34.5
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 1.2e-10 71.2 212 37.7
Sed0017971 Sechium edule HOM05D002331 ORTHO05D002624 1.2e-10 71.2 208 32.7
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.6e-10 70.9 212 41.0
Psat7g199680 Pisum sativum HOM05D010177 ORTHO05D003109 1.6e-10 70.9 252 31.0
Sed0024673 Sechium edule HOM05D004441 ORTHO05D003109 1.6e-10 70.9 219 37.0
Glyma.12G108500 Glycine max HOM05D010177 ORTHO05D003109 2.0e-10 70.5 256 29.3
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.5e-10 69.7 262 34.0
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 4.6e-10 69.3 109 48.6
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.6e-10 69.3 201 40.3
Phvul.011G112800 Phaseolus vulgaris HOM05D010177 ORTHO05D003109 4.6e-10 69.3 202 37.1
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 6.0e-10 68.9 203 36.9
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.0e-09 68.2 262 33.6
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.0e-09 68.2 193 37.3
CDE05G3194 Ceratophyllum demersum HOM05D058240 ORTHO05D003109 1.7e-09 67.4 201 35.8
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.3e-09 67.0 205 35.1
Nn2g13357 Nelumbo nucifera HOM05D004441 ORTHO05D003109 3.0e-09 66.6 61 65.6
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.9e-09 66.2 262 33.6
CANSAT64G2194 Cannabis sativa HOM05D010652 ORTHO05D003109 6.6e-09 65.5 220 35.9
Rhsim04G0066200 Rhododendron simsii HOM05D009304 ORTHO05D003109 6.6e-09 65.5 198 38.4
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 8.6e-09 65.1 197 35.0
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 8.6e-09 65.1 196 36.2
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 8.6e-09 65.1 170 41.2
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 8.6e-09 65.1 197 40.6
ECA234G0694 Erigeron canadensis HOM05D009304 ORTHO05D003109 1.1e-08 64.7 206 38.3
Hma1.2p1_0280F.1_g112760 Hydrangea macrophylla HOM05D009304 ORTHO05D003109 1.1e-08 64.7 190 37.4
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 1.1e-08 64.7 188 37.2
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 1.1e-08 64.7 197 40.1
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 1.9e-08 63.9 194 34.5
Atru.chr10.1971 Acer truncatum HOM05D004441 ORTHO05D003109 3.3e-08 63.2 183 36.6
Lj3g0011122 Lotus japonicus HOM05D010177 ORTHO05D003109 3.3e-08 63.2 220 35.5
Sopen12g021050 Solanum pennellii HOM05D009304 ORTHO05D003109 3.3e-08 63.2 180 37.2
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 4.3e-08 62.8 229 34.1
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 4.3e-08 62.8 199 35.7
Prupe.3G233700 Prunus persica HOM05D010652 ORTHO05D003109 5.6e-08 62.4 210 33.8
CAN.G996.13 Capsicum annuum HOM05D009304 ORTHO05D003109 7.3e-08 62.0 219 37.0
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 9.5e-08 61.6 197 35.5
BcaC09g49327 Brassica carinata HOM05D004441 ORTHO05D003109 9.5e-08 61.6 227 33.5
C01p37890 Brassica napus HOM05D004441 ORTHO05D003109 9.5e-08 61.6 227 33.5
BolC1t03749H Brassica oleracea HOM05D004441 ORTHO05D003109 9.5e-08 61.6 227 33.5
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 1.6e-07 60.8 248 28.2
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 1.6e-07 60.8 201 34.8
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 1.6e-07 60.8 197 39.6
Ah.09g235850 Amaranthus hybridus HOM05D004441 ORTHO05D003109 2.1e-07 60.5 251 31.1
arahy.Tifrunner.gnm1.ann1.48X98F Arachis hypogaea HOM05D010177 ORTHO05D003109 2.8e-07 60.1 203 33.0
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 2.8e-07 60.1 195 35.4
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 2.8e-07 60.1 206 34.0
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 2.8e-07 60.1 206 34.0
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 2.8e-07 60.1 206 34.0
CDE02G3343 Ceratophyllum demersum HOM05D004441 ORTHO05D003109 4.7e-07 59.3 187 35.8
A01p29970 Brassica napus HOM05D004441 ORTHO05D003109 6.2e-07 58.9 227 33.0
CiPaw.03G171700 Carya illinoinensis HOM05D004441 ORTHO05D003109 8.0e-07 58.5 247 29.6
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.4e-06 57.8 205 40.0
Glyma.U031310 Glycine max HOM05D010177 ORTHO05D003109 1.8e-06 57.4 258 28.7
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 3.1e-06 56.6 206 34.5
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 3.1e-06 56.6 206 34.5
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 3.1e-06 56.6 205 33.2
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 4.0e-06 56.2 256 32.8
Solyc08g068460.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 4.0e-06 56.2 139 41.0
VMungo1127G1338 Vigna mungo HOM05D010177 ORTHO05D003109 6.8e-06 55.5 212 32.5
ECA236G4168 Erigeron canadensis HOM05D004441 ORTHO05D003109 8.9e-06 55.1 175 38.3
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 8.9e-06 55.1 217 36.4


User provided reference genes

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