Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0287 Trochodendron aralioides HOM05D000873 ORTHO05D018236 1.8e-84 315.8 155 100.0
MBI02_g06004_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 1.1e-17 94.0 175 37.1
MELO3C002555.2 Cucumis melo HOM05D000873 ORTHO05D001654 8.7e-15 84.3 199 35.2
Lj3g0011092 Lotus japonicus HOM05D000873 ORTHO05D001654 4.8e-13 78.6 163 35.0
TAR629G3479 Trochodendron aralioides HOM05D000873 ORTHO05D001654 4.5e-11 72.0 52 71.2
Cpa.g.sc27.129 Carica papaya HOM05D000873 ORTHO05D001654 2.2e-10 69.7 34 97.1
ClCG03G005510 Citrullus lanatus HOM05D000873 ORTHO05D001654 8.5e-10 67.8 34 94.1
CsaV3_1G011780 Cucumis sativus L. HOM05D000873 ORTHO05D001654 8.5e-10 67.8 34 94.1
CSS0029454 Camellia sinensis var. sinensis HOM05D000873 ORTHO05D001654 1.9e-09 66.6 34 91.2
CiPaw.09G157700 Carya illinoinensis HOM05D000873 ORTHO05D001654 1.9e-09 66.6 34 91.2
TWI38G0545 Tripterygium wilfordii HOM05D000873 ORTHO05D001654 1.9e-09 66.6 34 91.2
TWI38G1526 Tripterygium wilfordii HOM05D000873 ORTHO05D001654 1.9e-09 66.6 34 91.2
Dinv18993 Davidia involucrata HOM05D000873 ORTHO05D001654 2.5e-09 66.2 34 91.2
Manes.17G039000 Manihot esculenta HOM05D000873 ORTHO05D001654 2.5e-09 66.2 51 66.7
Potri.004G034100 Populus trichocarpa HOM05D000873 ORTHO05D001654 2.5e-09 66.2 51 66.7
Sabra04G0019800 Salix brachista HOM05D000873 ORTHO05D001654 2.5e-09 66.2 51 66.7
Sed0015030 Sechium edule HOM05D000873 ORTHO05D001654 2.5e-09 66.2 34 91.2
Lsat_1_v5_gn_4_56901 Lactuca sativa HOM05D000873 ORTHO05D001654 3.2e-09 65.9 51 64.7
Lj1A1213T39 Lonicera japonica HOM05D000873 ORTHO05D001654 4.2e-09 65.5 34 88.2
Actinidia05571 Actinidia chinensis HOM05D000873 ORTHO05D018236 7.2e-09 64.7 51 58.8
arahy.Tifrunner.gnm1.ann1.MDY4BQ Arachis hypogaea HOM05D000873 ORTHO05D001654 7.2e-09 64.7 51 62.7
arahy.Tifrunner.gnm1.ann1.R2D69N Arachis hypogaea HOM05D000873 ORTHO05D001654 7.2e-09 64.7 51 62.7
Ciclev10014723m.g Citrus clementina HOM05D000873 ORTHO05D001654 7.2e-09 64.7 34 88.2
Glyma.07G189900 Glycine max HOM05D000873 ORTHO05D001654 7.2e-09 64.7 51 62.7
Cfa000349 Carpinus fangiana HOM05D000873 ORTHO05D001654 9.4e-09 64.3 34 88.2
DCAR_028133 Daucus carota HOM05D000873 ORTHO05D001654 9.4e-09 64.3 34 85.3
Lj8A117G57 Lonicera japonica HOM05D000873 ORTHO05D001654 9.4e-09 64.3 154 34.4
Phvul.002G221500 Phaseolus vulgaris HOM05D000873 ORTHO05D001654 9.4e-09 64.3 34 85.3
Thecc.06G199800 Theobroma cacao HOM05D000873 ORTHO05D001654 9.4e-09 64.3 34 85.3
VMungo0251G0252 Vigna mungo HOM05D000873 ORTHO05D001654 9.4e-09 64.3 34 85.3
Atru.chr10.2015 Acer truncatum HOM05D000873 ORTHO05D001654 1.2e-08 63.9 59 55.9
CAN.G424.16 Capsicum annuum HOM05D000873 ORTHO05D001654 1.2e-08 63.9 34 85.3
Duzib192G0969 Durio zibethinus HOM05D000873 ORTHO05D001654 1.2e-08 63.9 34 85.3
ECA234G3564 Erigeron canadensis HOM05D000873 ORTHO05D001654 1.2e-08 63.9 51 62.7
QL04p018222 Quercus lobata HOM05D000873 ORTHO05D001654 1.2e-08 63.9 34 88.2
SGA_v2.0_scaffold159G37688 Striga asiatica HOM05D000873 ORTHO05D001654 1.2e-08 63.9 34 85.3
TAR626G0424 Trochodendron aralioides HOM05D000873 ORTHO05D019844 1.2e-08 63.9 34 85.3
Aqoxy1G02724 Aquilegia oxysepala HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
Cc02_g12400 Coffea canephora HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
DCAR_008071 Daucus carota HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
Gohir.A06G123600 Gossypium hirsutum HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
Gohir.D06G128400 Gossypium hirsutum HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
Gorai.010G150000 Gossypium raimondii HOM05D000873 ORTHO05D001654 1.6e-08 63.5 34 85.3
Sp6g03920 Schrenkiella parvula HOM05D000873 ORTHO05D001654 1.6e-08 63.5 58 55.2
MBI02_g47876_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 2.1e-08 63.2 192 30.7
AL6G48630 Arabidopsis lyrata HOM05D000873 ORTHO05D001654 2.7e-08 62.8 34 82.4
AT4G05020 Arabidopsis thaliana HOM05D000873 ORTHO05D001654 2.7e-08 62.8 34 82.4
Carub.0006s3299 Capsella rubella HOM05D000873 ORTHO05D001654 2.7e-08 62.8 34 82.4
CARHR252510 Cardamine hirsuta HOM05D000873 ORTHO05D001654 2.7e-08 62.8 34 82.4
Migut.H01516 Erythranthe guttata HOM05D000873 ORTHO05D001654 2.7e-08 62.8 63 54.0
Lsat_1_v5_gn_1_126860 Lactuca sativa HOM05D000873 ORTHO05D001654 2.7e-08 62.8 51 60.8
CANSAT56G1011 Cannabis sativa HOM05D000873 ORTHO05D001654 3.6e-08 62.4 34 85.3
Solyc02g079170.3 Solanum lycopersicum HOM05D000873 ORTHO05D001654 3.6e-08 62.4 34 82.4
Sopen02g023970 Solanum pennellii HOM05D000873 ORTHO05D001654 3.6e-08 62.4 34 82.4
PGSC0003DMG400022405 Solanum tuberosum HOM05D000873 ORTHO05D001654 3.6e-08 62.4 34 82.4
PSO675G2723 Papaver somniferum HOM05D000873 ORTHO05D001654 4.6e-08 62.0 34 79.4
Glyma.08G059300 Glycine max HOM05D000873 ORTHO05D001654 6.1e-08 61.6 51 60.8
Lj6g0015860 Lotus japonicus HOM05D000873 ORTHO05D001654 6.1e-08 61.6 51 60.8
Peaxi162Scf00619g00911 Petunia axillaris HOM05D000873 ORTHO05D001654 6.1e-08 61.6 34 82.4
TPR.G523 Trifolium pratense HOM05D000873 ORTHO05D001654 6.1e-08 61.6 51 58.8
Actinidia26994 Actinidia chinensis HOM05D000873 ORTHO05D001654 7.9e-08 61.2 34 82.4
COL.COLO4_31587 Corchorus olitorius HOM05D000873 ORTHO05D001654 7.9e-08 61.2 34 76.5
Sed0023335 Sechium edule HOM05D000873 ORTHO05D001654 7.9e-08 61.2 34 82.4
BcaC04g21366 Brassica carinata HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
A09p25780 Brassica napus HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
C09p32660 Brassica napus HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
BolC9t56112H Brassica oleracea HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
BraA09t38147Z Brassica rapa HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
FvH4_3g03960 Fragaria vesca HOM05D000873 ORTHO05D001654 1.0e-07 60.8 33 84.8
FAN11G3470 Fragaria x ananassa HOM05D000873 ORTHO05D001654 1.0e-07 60.8 33 84.8
FAN16G1310 Fragaria x ananassa HOM05D000873 ORTHO05D001654 1.0e-07 60.8 33 84.8
FAN21G0177 Fragaria x ananassa HOM05D000873 ORTHO05D001654 1.0e-07 60.8 33 84.8
Nitab4.5_0008145g0020 Nicotiana tabacum HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 79.4
Potri.011G042500 Populus trichocarpa HOM05D000873 ORTHO05D001654 1.0e-07 60.8 34 82.4
HanXRQChr01g0005071 Helianthus annuus HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 76.5
MD05G1325700 Malus domestica HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 79.4
RcHm_v2.0_Chr5g0006291 Rosa chinensis HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 79.4
SGA_v2.0_scaffold49G18278 Striga asiatica HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 82.4
THA.LOC104812710 Tarenaya hassleriana HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 79.4
THA.LOC104812953 Tarenaya hassleriana HOM05D000873 ORTHO05D001654 1.4e-07 60.5 34 82.4
MELO3C013534.2 Cucumis melo HOM05D000873 ORTHO05D001654 1.8e-07 60.1 34 76.5
FAN25G1296 Fragaria x ananassa HOM05D000873 ORTHO05D001654 1.8e-07 60.1 33 84.8
Lalb_Chr18g0059941 Lupinus albus HOM05D000873 ORTHO05D001654 1.8e-07 60.1 34 79.4
GSVIVG01030007001 Vitis vinifera HOM05D000873 ORTHO05D001654 1.8e-07 60.1 34 79.4
BcaB01g01865 Brassica carinata HOM05D000873 ORTHO05D001654 2.3e-07 59.7 34 76.5
Oeu036683.1 Olea europaea HOM05D000873 ORTHO05D001654 2.3e-07 59.7 34 79.4
Rhsim13G0169800 Rhododendron simsii HOM05D000873 ORTHO05D001654 2.3e-07 59.7 34 85.3
Aa31LG9G9410 Aethionema arabicum HOM05D000873 ORTHO05D001654 3.0e-07 59.3 34 76.5
MSTRG.14677 Avicennia marina HOM05D000873 ORTHO05D001654 3.0e-07 59.3 34 82.4
PGR042G2491 Punica granatum HOM05D000873 ORTHO05D001654 3.0e-07 59.3 34 82.4
arahy.Tifrunner.gnm1.ann1.80FISQ Arachis hypogaea HOM05D000873 ORTHO05D001654 3.9e-07 58.9 51 56.9
arahy.Tifrunner.gnm1.ann1.YRN4PU Arachis hypogaea HOM05D000873 ORTHO05D001654 3.9e-07 58.9 51 56.9
Thhalv10024771m.g Eutrema salsugineum HOM05D000873 ORTHO05D001654 3.9e-07 58.9 34 79.4
Sed0015772 Sechium edule HOM05D000873 ORTHO05D001654 3.9e-07 58.9 34 76.5
Carub.0007s1995 Capsella rubella HOM05D000873 ORTHO05D001654 5.1e-07 58.5 34 76.5
CsaV3_6G012430 Cucumis sativus L. HOM05D000873 ORTHO05D001654 5.1e-07 58.5 34 76.5
Sabra11G0029200 Salix brachista HOM05D000873 ORTHO05D001654 5.1e-07 58.5 34 79.4
ECA248G3315 Erigeron canadensis HOM05D000873 ORTHO05D001654 6.7e-07 58.2 58 51.7
Lj2A279T58 Lonicera japonica HOM05D000873 ORTHO05D001654 6.7e-07 58.2 42 61.9
Ca_00251_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 8.8e-07 57.8 51 56.9
Ca_18480_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 8.8e-07 57.8 34 79.4
Ca_29768_v3 Cicer arietinum L. HOM05D000873 ORTHO05D001654 8.8e-07 57.8 51 56.9
Medtr2g011730 Medicago truncatula HOM05D000873 ORTHO05D001654 8.8e-07 57.8 51 56.9
PSO832G1653 Papaver somniferum HOM05D000873 ORTHO05D001654 8.8e-07 57.8 34 76.5
unitig_26.g9372 Utricularia gibba HOM05D000873 ORTHO05D001654 8.8e-07 57.8 34 79.4
Aqoxy1G03889 Aquilegia oxysepala HOM05D000873 ORTHO05D001654 1.1e-06 57.4 34 73.5
AL7G32580 Arabidopsis lyrata HOM05D000873 ORTHO05D001654 1.1e-06 57.4 34 73.5
Glyma.15G067300 Glycine max HOM05D000873 ORTHO05D001654 1.1e-06 57.4 34 76.5
MBI02_g06005_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 1.1e-06 57.4 34 76.5
Lj4g0017989 Lotus japonicus HOM05D000873 ORTHO05D001654 1.5e-06 57.0 34 76.5
Medtr4g091240 Medicago truncatula HOM05D000873 ORTHO05D001654 1.5e-06 57.0 34 73.5
SalBow7G3266 Salvia bowleyana HOM05D000873 ORTHO05D001654 1.5e-06 57.0 34 79.4
SalBow7G3273 Salvia bowleyana HOM05D000873 ORTHO05D001654 1.5e-06 57.0 34 79.4
Lalb_Chr09g0327331 Lupinus albus HOM05D000873 ORTHO05D001654 2.0e-06 56.6 34 76.5
Hund23604 Selenicereus undatus HOM05D000873 ORTHO05D001654 2.0e-06 56.6 39 69.2
Eucgr.E03807 Eucalyptus grandis HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 79.4
Glyma.13G246600 Glycine max HOM05D000873 ORTHO05D001654 2.5e-06 56.2 51 56.9
PSO210G5935 Papaver somniferum HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 73.5
QL07p038733 Quercus lobata HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 73.5
QL07p038984 Quercus lobata HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 73.5
Sp7g19610 Schrenkiella parvula HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 76.5
Sc06g0009170 Simmondsia chinensis HOM05D000873 ORTHO05D001654 2.5e-06 56.2 58 53.4
Sc17g0006640 Simmondsia chinensis HOM05D000873 ORTHO05D001654 2.5e-06 56.2 34 79.4
AT4G21490 Arabidopsis thaliana HOM05D000873 ORTHO05D001654 3.3e-06 55.8 34 70.6
HanXRQChr17g0542181 Helianthus annuus HOM05D000873 ORTHO05D001654 3.3e-06 55.8 34 76.5
Lj2A1215G59 Lonicera japonica HOM05D000873 ORTHO05D018236 3.3e-06 55.8 33 78.8
ECA246G1471 Erigeron canadensis HOM05D000873 ORTHO05D001654 4.3e-06 55.5 34 76.5
MBI02_g39345_MAGBIO Magnolia biondii HOM05D000873 ORTHO05D001654 4.3e-06 55.5 33 75.8
MD10G1303600 Malus domestica HOM05D000873 ORTHO05D001654 4.3e-06 55.5 34 70.6
SHI10476 Sapria himalayana HOM05D000873 ORTHO05D001654 4.3e-06 55.5 194 27.3
Thecc.02G172000 Theobroma cacao HOM05D000873 ORTHO05D001654 4.3e-06 55.5 34 73.5
TPR.G36739 Trifolium pratense HOM05D000873 ORTHO05D001654 4.3e-06 55.5 51 54.9
vmacro12261 Vaccinium macrocarpon HOM05D000873 ORTHO05D001654 4.3e-06 55.5 34 73.5
AUR62014717 Chenopodium quinoa HOM05D000873 ORTHO05D001654 5.7e-06 55.1 34 73.5
AUR62016896 Chenopodium quinoa HOM05D000873 ORTHO05D001654 5.7e-06 55.1 34 73.5
Haze_13089 Corylus avellana HOM05D000873 ORTHO05D001654 5.7e-06 55.1 34 70.6
VMungo0540G1328 Vigna mungo HOM05D000873 ORTHO05D001654 5.7e-06 55.1 51 54.9
Actinidia12456 Actinidia chinensis HOM05D000873 ORTHO05D001654 7.4e-06 54.7 34 73.5
EL10Ac8g20533 Beta vulgaris HOM05D000873 ORTHO05D001654 7.4e-06 54.7 48 54.2
CSS0011946 Camellia sinensis var. sinensis HOM05D000873 ORTHO05D001654 7.4e-06 54.7 52 51.9
Sopen07g028570 Solanum pennellii HOM05D000873 ORTHO05D001654 7.4e-06 54.7 38 68.4
GSVIVG01030008001 Vitis vinifera HOM05D000873 ORTHO05D001654 7.4e-06 54.7 34 76.5
Actinidia09901 Actinidia chinensis HOM05D000873 ORTHO05D001654 9.7e-06 54.3 34 70.6
Ah.14g088910 Amaranthus hybridus HOM05D000873 ORTHO05D001654 9.7e-06 54.3 39 64.1
arahy.Tifrunner.gnm1.ann1.86CUUY Arachis hypogaea HOM05D000873 ORTHO05D001654 9.7e-06 54.3 55 50.9
arahy.Tifrunner.gnm1.ann1.NC7VPC Arachis hypogaea HOM05D000873 ORTHO05D001654 9.7e-06 54.3 55 50.9
CANSAT64G2481 Cannabis sativa HOM05D000873 ORTHO05D001654 9.7e-06 54.3 34 76.5
CiPaw.04G122800 Carya illinoinensis HOM05D000873 ORTHO05D001654 9.7e-06 54.3 34 67.6
COL.COLO4_13685 Corchorus olitorius HOM05D000873 ORTHO05D001654 9.7e-06 54.3 48 52.1
PGR142G3707 Punica granatum HOM05D000873 ORTHO05D001654 9.7e-06 54.3 41 61.0
Zm00001eb172970 Zea mays HOM05D000873 ORTHO05D001654 9.7e-06 54.3 58 51.7


User provided reference genes

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