Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0262 Trochodendron aralioides HOM05D006994 ORTHO05D008229 0.0e+00 1989.2 992 100.0
TAR629G2429 Trochodendron aralioides HOM05D006994 ORTHO05D008229 0.0e+00 1438.3 995 75.0
Nn3g20985 Nelumbo nucifera HOM05D006994 ORTHO05D008229 9.5e-272 940.6 989 53.5
Dinv12707 Davidia involucrata HOM05D006994 ORTHO05D008229 2.4e-251 872.8 991 51.7
Dinv06483 Davidia involucrata HOM05D006994 ORTHO05D008229 4.4e-245 852.0 996 51.6
QL08p043727 Quercus lobata HOM05D006994 ORTHO05D008229 2.1e-234 816.6 996 49.2
Cfa022555 Carpinus fangiana HOM05D006994 ORTHO05D008229 3.1e-230 802.7 997 49.1
Nn6g34417 Nelumbo nucifera HOM05D006994 ORTHO05D008229 1.2e-226 790.8 1002 47.6
GSVIVG01000809001 Vitis vinifera HOM05D006994 ORTHO05D008229 1.3e-217 760.8 957 47.8
CSS0008190 Camellia sinensis var. sinensis HOM05D006994 ORTHO05D008229 5.8e-205 718.8 1002 47.3
Thecc.01G159900 Theobroma cacao HOM05D006994 ORTHO05D008229 1.1e-187 661.4 997 42.9
Prupe.3G170300 Prunus persica HOM05D006994 ORTHO05D008229 5.1e-185 652.5 1009 44.0
Duzib187G0002 Durio zibethinus HOM05D006994 ORTHO05D008229 5.0e-172 609.4 998 41.8
Duzib147G0646 Durio zibethinus HOM05D006994 ORTHO05D008229 1.2e-168 598.2 997 40.6
Actinidia32524 Actinidia chinensis HOM05D006994 ORTHO05D008229 2.9e-164 583.6 1001 41.4
CiPaw.03G188200 Carya illinoinensis HOM05D006994 ORTHO05D008229 5.5e-163 579.3 871 42.8
COL.COLO4_33721 Corchorus olitorius HOM05D006994 ORTHO05D008229 9.4e-163 578.6 1006 39.6
Atru.chr6.1474 Acer truncatum HOM05D006994 ORTHO05D008229 5.0e-156 556.2 998 39.7
Gorai.006G007500 Gossypium raimondii HOM05D006994 ORTHO05D008229 2.5e-155 553.9 999 39.9
Gohir.D09G005900 Gossypium hirsutum HOM05D006994 ORTHO05D008229 9.5e-155 552.0 999 39.9
PSO541G2047 Papaver somniferum HOM05D006994 ORTHO05D008229 2.1e-154 550.8 989 39.0
PSO675G3324 Papaver somniferum HOM05D006994 ORTHO05D008229 4.0e-153 546.6 990 39.2
RcHm_v2.0_Chr2g0150941 Rosa chinensis HOM05D006994 ORTHO05D008229 1.4e-150 538.1 999 38.9
MD09G1155600 Malus domestica HOM05D006994 ORTHO05D008229 5.9e-149 532.7 1000 39.0
Hma1.2p1_0036F.1_g023730 Hydrangea macrophylla HOM05D006994 ORTHO05D008229 9.5e-147 525.4 976 39.3
Cpa.g.sc50.71 Carica papaya HOM05D006994 ORTHO05D008229 1.4e-142 511.5 970 38.5
FAN02G4438 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.0e-136 491.1 1002 37.0
Aqoxy4G00195 Aquilegia oxysepala HOM05D006994 ORTHO05D008229 1.7e-135 488.0 1009 38.8
FAN09G0855 Fragaria x ananassa HOM05D006994 ORTHO05D008229 2.1e-133 481.1 1001 36.5
FAN14G2472 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.5e-133 480.3 1003 36.6
Ciclev10030533m.g Citrus clementina HOM05D006994 ORTHO05D008229 1.7e-132 478.0 1035 36.6
FvH4_6g37820 Fragaria vesca HOM05D006994 ORTHO05D008229 3.0e-132 477.2 1003 36.5
CANSAT64G1952 Cannabis sativa HOM05D006994 ORTHO05D008229 2.0e-128 464.5 1004 37.3
Gohir.A09G006700 Gossypium hirsutum HOM05D006994 ORTHO05D008229 2.9e-119 434.1 879 37.3
Rhsim06G0121200 Rhododendron simsii HOM05D006994 ORTHO05D008229 4.9e-119 433.3 1000 36.1
Eucgr.A01960 Eucalyptus grandis HOM05D006994 ORTHO05D008229 3.3e-115 420.6 1051 34.7
TWI59G0403 Tripterygium wilfordii HOM05D006994 ORTHO05D008229 1.4e-113 415.2 1005 32.6
vmacro23412 Vaccinium macrocarpon HOM05D006994 ORTHO05D008229 3.1e-113 414.1 999 34.2
Actinidia11193 Actinidia chinensis HOM05D006994 ORTHO05D008229 3.8e-111 407.1 945 35.4
Lj1A585G38 Lonicera japonica HOM05D006994 ORTHO05D008229 7.9e-109 399.4 993 32.9
Cc05_g09220 Coffea canephora HOM05D006994 ORTHO05D008229 1.1e-97 362.5 1010 32.0
Manes.02G085800 Manihot esculenta HOM05D006994 ORTHO05D008229 1.3e-84 318.9 796 32.8
PGR042G2686 Punica granatum HOM05D006994 ORTHO05D008229 4.3e-83 313.9 1025 30.5
CsaV3_6G037970 Cucumis sativus L. HOM05D006994 ORTHO05D008229 3.0e-76 291.2 1008 30.1
Glyma.02G288000 Glycine max HOM05D006994 ORTHO05D008229 1.7e-74 285.4 939 30.4
Nitab4.5_0001121g0180 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.1e-73 282.7 993 29.9
Glyma.14G026900 Glycine max HOM05D006994 ORTHO05D008229 1.8e-73 282.0 953 30.4
MD17G1141700 Malus domestica HOM05D006994 ORTHO05D008229 5.3e-73 280.4 531 38.8
Glyma.08G310800 Glycine max HOM05D006994 ORTHO05D008229 4.5e-72 277.3 1013 30.2
ClCG09G022300 Citrullus lanatus HOM05D006994 ORTHO05D008229 1.3e-71 275.8 1017 29.8
Nitab4.5_0007153g0010 Nicotiana tabacum HOM05D006994 ORTHO05D008229 1.3e-71 275.8 984 29.8
MELO3C014460.2 Cucumis melo HOM05D006994 ORTHO05D008229 1.7e-71 275.4 998 30.3
Lalb_Chr04g0248671 Lupinus albus HOM05D006994 ORTHO05D008229 5.0e-71 273.9 928 29.8
Sed0021960 Sechium edule HOM05D006994 ORTHO05D008229 1.1e-70 272.7 1021 29.3
CDE02G3923 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 3.0e-68 264.6 1021 28.0
Phvul.008G190400 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 3.0e-68 264.6 944 29.9
Sopen07g029270 Solanum pennellii HOM05D006994 ORTHO05D008229 2.2e-66 258.5 1002 29.3
VMungo0647G0009 Vigna mungo HOM05D006994 ORTHO05D008229 2.8e-66 258.1 940 29.9
arahy.Tifrunner.gnm1.ann1.0D28PY Arachis hypogaea HOM05D006994 ORTHO05D008229 1.4e-65 255.8 944 30.4
Peaxi162Scf00154g00620 Petunia axillaris HOM05D006994 ORTHO05D008229 2.4e-65 255.0 996 29.3
TPR.G12670 Trifolium pratense HOM05D006994 ORTHO05D008229 4.1e-65 254.2 935 29.3
arahy.Tifrunner.gnm1.ann1.T2GFFQ Arachis hypogaea HOM05D006994 ORTHO05D008229 1.3e-63 249.2 945 30.2
CAN.G585.58 Capsicum annuum HOM05D006994 ORTHO05D008229 1.1e-62 246.1 978 29.6
Ca_06289_v3 Cicer arietinum L. HOM05D006994 ORTHO05D008229 7.2e-62 243.4 938 29.0
Oeu041607.1 Olea europaea HOM05D006994 ORTHO05D008229 1.8e-60 238.8 813 30.0
PGSC0003DMG400017294 Solanum tuberosum HOM05D006994 ORTHO05D008229 4.0e-60 237.7 1008 28.6
Sed0007753 Sechium edule HOM05D006994 ORTHO05D008229 1.1e-59 236.1 999 27.8
DCAR_021306 Daucus carota HOM05D006994 ORTHO05D008229 2.4e-57 228.4 1114 26.8
LjContig00310g0024424 Lotus japonicus HOM05D006994 ORTHO05D008229 2.7e-56 224.9 941 29.0
CAN.G1332.1 Capsicum annuum HOM05D006994 ORTHO05D008229 1.3e-55 222.6 979 28.5
Medtr5g091810 Medicago truncatula HOM05D006994 ORTHO05D008229 4.2e-54 217.6 959 27.6
CAN.G1481.2 Capsicum annuum HOM05D006994 ORTHO05D008229 5.5e-54 217.2 982 28.0
VMungo0540G1807 Vigna mungo HOM05D006994 ORTHO05D008229 1.6e-53 215.7 987 27.1
ATR0602G060 Amborella trichopoda HOM05D006994 ORTHO05D008229 2.7e-53 214.9 1013 27.1
Psat0s1339g0080 Pisum sativum HOM05D006994 ORTHO05D008229 1.0e-52 213.0 940 28.4
Lalb_Chr17g0348341 Lupinus albus HOM05D006994 ORTHO05D008229 3.5e-48 198.0 785 29.0
Glyma.18G104900 Glycine max HOM05D006994 ORTHO05D008229 6.5e-47 193.7 805 28.1
Solyc07g055910.4 Solanum lycopersicum HOM05D006994 ORTHO05D008229 3.6e-45 188.0 683 30.0
CDE08G1216 Ceratophyllum demersum HOM05D006994 ORTHO05D008229 2.9e-39 168.3 594 27.8
arahy.Tifrunner.gnm1.ann1.0VWG63 Arachis hypogaea HOM05D006994 ORTHO05D008229 1.5e-38 166.0 995 26.2
SalBow7G4498 Salvia bowleyana HOM05D006994 ORTHO05D008229 7.3e-38 163.7 964 27.1
Phvul.006G035100 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.2e-35 156.4 717 26.8
Sopen06g004440 Solanum pennellii HOM05D006994 ORTHO05D008229 4.1e-33 147.9 520 29.2
arahy.Tifrunner.gnm1.ann1.EW4W42 Arachis hypogaea HOM05D006994 ORTHO05D008229 2.7e-32 145.2 999 25.5
MSTRG.15058 Avicennia marina HOM05D006994 ORTHO05D008229 5.9e-32 144.1 935 25.7
Psat5g180160 Pisum sativum HOM05D006994 ORTHO05D008229 2.0e-19 102.4 285 33.0
Gohir.A09G006800 Gossypium hirsutum HOM05D006994 ORTHO05D008229 5.8e-19 100.9 102 54.9
FAN05G3500 Fragaria x ananassa HOM05D006994 ORTHO05D008229 3.0e-15 88.6 202 36.1
HPP92_005185 Vanilla planifolia HOM05D006994 ORTHO05D008229 4.7e-13 81.3 326 29.1
HPP92_005186 Vanilla planifolia HOM05D006994 ORTHO05D008229 1.3e-10 73.2 388 26.8
Glyma.18G105000 Glycine max HOM05D006994 ORTHO05D008229 1.1e-09 70.1 73 53.4
Os05g0518200 Oryza sativa ssp. japonica HOM05D052142 ORTHO05D050110 1.1e-09 70.1 400 25.8
Solyc06g009803.1 Solanum lycopersicum HOM05D006994 ORTHO05D008229 4.1e-09 68.2 108 38.9
Phvul.006G035050 Phaseolus vulgaris HOM05D006994 ORTHO05D008229 1.1e-06 60.1 55 54.5
Psat5g180120 Pisum sativum HOM05D006994 ORTHO05D008229 1.9e-06 59.3 170 31.8
Sp5g04070 Schrenkiella parvula HOM05D014107 ORTHO05D008229 5.6e-06 57.8 259 27.8
THA.LOC104804894 Tarenaya hassleriana HOM05D014107 ORTHO05D008229 5.6e-06 57.8 365 23.3


User provided reference genes

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