Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 3.4e-46 188.0 93 100.0
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 5.4e-28 127.5 93 73.1
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 8.1e-24 113.6 93 60.2
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.0e-22 109.0 81 69.1
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 6.2e-16 87.4 94 55.3
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 2.6e-14 82.0 84 54.8
CSS0011468 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 3.4e-14 81.6 94 51.1
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 7.6e-14 80.5 93 51.6
vmacro09223 Vaccinium macrocarpon HOM05D004563 ORTHO05D002944 2.2e-13 79.0 93 48.4
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 6.4e-13 77.4 84 52.4
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.1e-12 76.6 93 50.5
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 1.1e-12 76.6 92 51.1
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 1.9e-12 75.9 93 48.4
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 2.4e-12 75.5 93 47.3
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 4.2e-12 74.7 92 50.0
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 1.2e-11 73.2 93 47.3
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 2.7e-11 72.0 93 47.3
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 6.0e-11 70.9 93 46.2
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 7.8e-11 70.5 93 47.3
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 1.7e-10 69.3 93 43.0
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 2.3e-10 68.9 93 46.2
MBI07_g21399_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 3.0e-10 68.6 84 42.9
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 5.1e-10 67.8 92 48.9
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 6.6e-10 67.4 93 43.0
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 8.7e-10 67.0 86 46.5
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 2.5e-09 65.5 86 46.5
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 3.3e-09 65.1 93 43.0
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 3.3e-09 65.1 93 47.3
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 5.6e-09 64.3 92 40.2
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 7.3e-09 63.9 93 41.9
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 7.3e-09 63.9 92 47.8
COL.COLO4_33545 Corchorus olitorius HOM05D004563 ORTHO05D002944 9.6e-09 63.5 93 45.2
FAN09G1171 Fragaria x ananassa HOM05D004563 ORTHO05D002944 9.6e-09 63.5 93 41.9
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 9.6e-09 63.5 92 47.8
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 9.6e-09 63.5 93 41.9
Oeu013689.1 Olea europaea HOM05D004563 ORTHO05D002944 9.6e-09 63.5 95 42.1
Oeu032703.1 Olea europaea HOM05D004563 ORTHO05D002944 9.6e-09 63.5 95 42.1
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 1.6e-08 62.8 93 44.1
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.6e-08 62.8 94 44.7
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 2.1e-08 62.4 95 46.3
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 2.8e-08 62.0 93 41.9
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 2.8e-08 62.0 93 45.2
FAN02G0553 Fragaria x ananassa HOM05D004563 ORTHO05D002944 2.8e-08 62.0 93 40.9
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 2.8e-08 62.0 92 44.6
Dinv15459 Davidia involucrata HOM05D004563 ORTHO05D002944 3.6e-08 61.6 61 52.5
FAN09G4605 Fragaria x ananassa HOM05D004563 ORTHO05D002944 3.6e-08 61.6 92 40.2
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 4.8e-08 61.2 93 40.9
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 4.8e-08 61.2 93 41.9
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 6.2e-08 60.8 93 41.9
FvH4_6g27121 Fragaria vesca HOM05D004563 ORTHO05D002944 6.2e-08 60.8 93 39.8
FAN14G3451 Fragaria x ananassa HOM05D004563 ORTHO05D002944 6.2e-08 60.8 93 39.8
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 8.1e-08 60.5 93 49.5
PGR083G0067 Punica granatum HOM05D008023 ORTHO05D010897 1.1e-07 60.1 93 39.8
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 1.8e-07 59.3 95 44.2
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 1.8e-07 59.3 93 45.2
MD09G1239700 Malus domestica HOM05D004563 ORTHO05D002944 2.4e-07 58.9 93 44.1
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 2.4e-07 58.9 111 36.9
SalBow7G0314 Salvia bowleyana HOM05D004563 ORTHO05D002944 3.1e-07 58.5 93 36.6
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 4.0e-07 58.2 93 43.0
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 4.0e-07 58.2 93 40.9
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 4.0e-07 58.2 93 40.9
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 4.0e-07 58.2 93 37.6
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 6.9e-07 57.4 93 40.9
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 6.9e-07 57.4 83 48.2
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 9.0e-07 57.0 93 45.2
MD10G1281200 Malus domestica HOM05D016724 ORTHO05D017903 9.0e-07 57.0 93 37.6
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.2e-06 56.6 93 45.2
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.2e-06 56.6 93 46.2
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 1.2e-06 56.6 92 41.3
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 1.2e-06 56.6 93 45.2
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.5e-06 56.2 93 40.9
Cpa.g.sc209.31 Carica papaya HOM05D004563 ORTHO05D002944 2.0e-06 55.8 93 32.3
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.0e-06 55.8 95 42.1
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 2.6e-06 55.5 72 47.2
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 2.6e-06 55.5 92 43.5
MBI06_g25989_MAGBIO Magnolia biondii HOM05D004563 ORTHO05D002944 2.6e-06 55.5 91 35.2
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 2.6e-06 55.5 84 47.6
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 2.6e-06 55.5 94 42.6
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 3.4e-06 55.1 93 41.9
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 3.4e-06 55.1 93 39.8
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 3.4e-06 55.1 93 40.9
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.4e-06 55.1 93 41.9
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 4.4e-06 54.7 84 39.3
Gohir.D10G112200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 4.4e-06 54.7 93 39.8
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 5.8e-06 54.3 93 34.4
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 5.8e-06 54.3 93 34.4
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 7.6e-06 53.9 92 41.3
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 7.6e-06 53.9 92 41.3
Gohir.A10G153900 Gossypium hirsutum HOM05D004563 ORTHO05D002944 7.6e-06 53.9 93 40.9
Gorai.011G124100 Gossypium raimondii HOM05D004563 ORTHO05D002944 7.6e-06 53.9 93 40.9
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 7.6e-06 53.9 93 41.9


User provided reference genes

Program Settings