Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 7.0e-235 817.0 440 100.0
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.1e-150 535.8 447 70.5
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 2.3e-145 519.6 457 68.3
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.1e-131 474.2 442 64.7
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 3.2e-131 472.6 465 63.2
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 1.2e-128 464.2 463 58.5
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 3.1e-126 456.1 441 63.9
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 4.1e-126 455.7 469 60.8
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 2.9e-124 449.5 464 59.7
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 3.8e-124 449.1 468 60.3
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 5.0e-124 448.7 443 59.8
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 9.4e-123 444.5 446 59.9
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 2.7e-122 443.0 460 60.0
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 4.7e-122 442.2 456 59.4
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 6.1e-122 441.8 462 60.4
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 8.0e-122 441.4 394 65.0
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 5.7e-120 435.3 458 60.3
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.7e-116 423.7 468 55.6
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 5.5e-115 418.7 472 57.2
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 7.2e-115 418.3 465 56.6
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 6.8e-113 411.8 451 57.9
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 1.2e-112 411.0 454 55.7
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 5.7e-112 408.7 453 57.8
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 5.7e-112 408.7 452 59.1
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 9.8e-112 407.9 449 61.0
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 2.8e-111 406.4 462 57.6
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 4.5e-109 399.1 448 55.4
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 4.5e-109 399.1 455 56.7
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 2.9e-108 396.4 410 60.0
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 5.0e-108 395.6 287 75.3
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.3e-107 391.7 452 56.0
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 9.5e-107 391.3 448 55.1
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.8e-106 389.8 440 57.7
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 3.6e-106 389.4 518 51.5
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.0e-105 387.9 446 55.6
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.8e-105 387.1 443 53.7
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 3.1e-105 386.3 466 54.3
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 4.0e-105 386.0 473 53.9
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 5.2e-105 385.6 481 50.7
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 2.6e-104 383.3 443 58.5
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 9.8e-104 381.3 437 55.1
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.7e-103 380.6 464 55.6
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 2.2e-103 380.2 467 54.2
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 3.2e-102 376.3 464 53.7
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.1e-102 375.9 442 56.1
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 2.0e-101 373.6 444 56.5
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 3.0e-100 369.8 448 52.9
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.6e-98 364.0 471 52.2
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.6e-98 364.0 453 52.1
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.6e-98 364.0 497 49.1
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 4.7e-98 362.5 404 56.7
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 1.8e-97 360.5 430 54.2
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.8e-97 360.5 449 54.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 2.3e-97 360.1 448 55.1
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 2.3e-97 360.1 484 48.6
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 3.1e-97 359.8 325 63.4
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 3.1e-97 359.8 470 49.6
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 3.1e-97 359.8 442 52.9
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 6.8e-97 358.6 465 55.3
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.4e-96 356.3 444 55.2
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.3e-95 354.4 369 56.4
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 1.1e-94 351.3 457 51.6
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.4e-94 350.9 445 52.4
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 3.2e-94 349.7 456 49.1
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 1.6e-93 347.4 493 47.1
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 6.6e-92 342.0 385 56.6
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 3.3e-91 339.7 388 53.6
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 5.6e-91 339.0 460 51.3
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.6e-90 337.4 384 54.9
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 8.1e-90 335.1 440 53.0
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 5.2e-89 332.4 434 50.9
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 6.8e-89 332.0 461 50.1
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 1.2e-88 331.3 490 48.8
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 1.5e-88 330.9 334 56.0
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 5.8e-88 328.9 352 57.4
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 4.9e-87 325.9 470 48.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.4e-86 322.4 451 51.4
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 3.5e-85 319.7 448 50.4
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.0e-84 316.6 464 50.2
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.1e-84 315.8 446 52.7
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 1.1e-83 314.7 362 52.5
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 1.1e-83 314.7 462 48.3
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 5.6e-83 312.4 322 58.7
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 5.6e-83 312.4 343 54.5
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 5.6e-83 312.4 445 50.8
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.1e-82 310.5 348 56.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 3.6e-82 309.7 380 53.9
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 4.7e-82 309.3 600 37.8
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.8e-81 307.4 335 57.0
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 4.6e-77 292.7 256 64.1
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 3.9e-76 289.7 432 48.4
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 3.9e-76 289.7 430 49.5
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 1.1e-75 288.1 337 54.9
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 1.4e-73 281.2 462 45.2
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.1e-73 280.0 350 52.0
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.6e-72 276.9 314 56.1
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 4.4e-72 276.2 226 68.6
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 1.7e-71 274.2 226 67.7
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 1.7e-71 274.2 302 55.6
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 3.2e-70 270.0 317 53.3
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 4.2e-70 269.6 230 67.8
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 5.4e-70 269.2 252 63.1
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 2.7e-69 266.9 226 67.7
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 7.9e-69 265.4 320 53.4
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 2.3e-68 263.8 189 73.0
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 4.3e-67 259.6 444 45.0
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 5.6e-67 259.2 225 65.3
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.6e-67 259.2 327 50.2
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 2.8e-66 256.9 225 65.3
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 2.8e-66 256.9 225 65.3
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 9.0e-65 251.9 231 63.6
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 9.9e-64 248.4 241 61.4
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 6.4e-63 245.7 305 52.5
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 4.6e-61 239.6 303 51.2
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 7.9e-61 238.8 280 54.6
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.8e-60 237.7 315 49.8
Zm00001eb152490 Zea mays HOM05D004030 ORTHO05D004952 2.5e-59 233.8 325 49.5
TWI63G1163 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 4.3e-59 233.0 257 54.1
HPP92_010042 Vanilla planifolia HOM05D004030 ORTHO05D004952 5.1e-52 209.5 396 40.2
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 5.7e-51 206.1 187 62.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 1.3e-50 204.9 329 43.2
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 1.4e-46 191.4 285 47.4
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 1.9e-46 191.0 381 37.0
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 8.7e-44 182.2 375 36.8
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 1.9e-43 181.0 254 44.9
COL.COLO4_06310 Corchorus olitorius HOM05D004030 ORTHO05D004952 2.5e-43 180.6 231 48.9
SHI28530 Sapria himalayana HOM05D004030 ORTHO05D004952 3.1e-41 173.7 192 52.1
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 9.0e-41 172.2 152 68.4
SMO266G0004 Selaginella moellendorffii HOM05D004030 ORTHO05D004952 9.0e-41 172.2 329 38.3
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 1.9e-38 164.5 137 72.3
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.4e-36 158.3 442 32.1
Aqoxy2G00428 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 5.1e-36 156.4 151 57.0
Peaxi162Scf00912g00019 Petunia axillaris HOM05D004030 ORTHO05D004952 2.0e-32 144.4 94 74.5
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 6.5e-31 139.4 160 55.0
CAN.G566.51 Capsicum annuum HOM05D004030 ORTHO05D004952 8.5e-31 139.0 214 43.9
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 5.5e-30 136.3 261 40.2
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 7.9e-29 132.5 263 40.7
Lsat_1_v5_gn_6_74880 Lactuca sativa HOM05D004030 ORTHO05D004952 1.4e-28 131.7 128 55.5
CSS0023477 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 3.9e-28 130.2 70 84.3
CSS0003365 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.5e-27 128.3 70 82.9
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 1.5e-27 128.3 142 55.6
Ah.16g108320 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.6e-27 127.5 69 82.6
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.7e-26 123.6 250 39.2
SGA_v2.0_scaffold16G07708 Striga asiatica HOM05D004030 ORTHO05D004952 3.7e-26 123.6 105 59.0
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 6.3e-26 122.9 248 41.1
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.2e-26 122.5 248 41.1
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 8.2e-26 122.5 248 41.1
SalBow5G5223 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.2e-26 122.5 70 81.4
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 7.0e-25 119.4 263 39.2
Nitab4.5_0000271g0330 Nicotiana tabacum HOM05D004030 ORTHO05D004952 7.0e-25 119.4 125 50.4
Nitab4.5_0004602g0020 Nicotiana tabacum HOM05D004030 ORTHO05D004952 2.0e-24 117.9 133 48.9
CBR_g31948 Chara braunii HOM05D004030 ORTHO05D004952 5.5e-22 109.8 279 32.3
Nn1g05398 Nelumbo nucifera HOM05D067915 ORTHO05D049297 1.4e-20 105.1 135 50.4
Pp3c22_6900 Physcomitrium patens HOM05D004030 ORTHO05D004952 2.0e-19 101.3 83 56.6
Nn1g05392 Nelumbo nucifera HOM05D067915 ORTHO05D049297 2.4e-17 94.4 137 56.9
Cpa.g.sc7.86 Carica papaya HOM05D004030 ORTHO05D033917 1.6e-16 91.7 148 43.2
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 1.0e-15 89.0 82 61.0
CSS0023566 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.9e-15 87.4 86 58.1
CSS0043633 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 1.1e-14 85.5 90 54.4
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.1e-13 81.3 75 60.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.6e-13 80.5 115 47.0
MCO08G144 Micromonas commoda HOM05D004030 ORTHO05D004952 4.0e-12 77.0 99 38.4
Pp3c21_660 Physcomitrium patens HOM05D004030 ORTHO05D004952 1.1e-09 68.9 279 28.3
Lj5g0018916 Lotus japonicus HOM05D004030 ORTHO05D004952 2.0e-08 64.7 96 42.7
SalBow5G1360 Salvia bowleyana HOM05D004030 ORTHO05D004952 8.5e-07 59.3 67 52.2
TPR.G16979 Trifolium pratense HOM05D004030 ORTHO05D004952 1.1e-06 58.9 136 41.9
CSS0039806 Camellia sinensis var. sinensis HOM05D043465 ORTHO05D033917 1.9e-06 58.2 146 35.6
SHI28534 Sapria himalayana HOM05D005377 ORTHO05D003034 5.5e-06 56.6 135 37.0


User provided reference genes

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