Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.8e-150 536.2 323 100.0
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.6e-148 528.5 323 99.1
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 8.5e-97 357.8 339 65.8
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 8.3e-92 341.3 330 68.5
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.2e-87 327.4 358 63.1
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.2e-85 320.9 311 65.6
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.0e-85 320.1 303 63.4
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 2.3e-73 280.0 349 52.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 5.6e-72 275.4 357 57.1
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 7.3e-72 275.0 344 53.2
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 9.5e-72 274.6 330 59.4
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.1e-71 273.5 348 58.3
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.2e-69 267.7 342 56.4
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 4.4e-69 265.8 368 55.4
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 1.3e-68 264.2 344 53.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.2e-68 263.5 334 53.6
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 3.7e-68 262.7 337 51.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 1.6e-66 257.3 356 52.2
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 2.0e-66 256.9 325 50.8
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 3.5e-66 256.1 312 55.1
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 7.8e-66 255.0 345 48.1
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.8e-66 255.0 330 52.7
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 7.8e-66 255.0 340 54.4
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.8e-66 255.0 359 49.6
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 7.8e-66 255.0 357 51.8
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.3e-65 253.4 357 51.8
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 8.6e-65 251.5 338 55.0
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.1e-64 251.1 352 57.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 1.9e-64 250.4 346 49.4
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.9e-64 250.4 326 57.4
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 2.5e-64 250.0 338 52.4
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.3e-64 249.6 330 53.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 5.6e-64 248.8 326 55.5
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.1e-63 246.9 336 56.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.8e-62 243.8 310 56.8
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 8.9e-62 241.5 361 48.2
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.5e-61 240.7 314 55.1
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 1.5e-61 240.7 324 61.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.0e-61 240.4 336 53.0
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 2.6e-61 240.0 339 53.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 5.8e-61 238.8 391 49.6
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 9.9e-61 238.0 304 53.0
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-60 237.7 339 53.4
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.7e-60 237.3 328 55.2
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 2.2e-60 236.9 281 56.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 3.7e-60 236.1 339 55.8
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 8.3e-60 235.0 317 52.1
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 8.3e-60 235.0 324 47.5
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 7.1e-59 231.9 236 55.1
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 9.2e-59 231.5 353 52.7
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-58 231.1 401 47.9
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 2.1e-58 230.3 344 52.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 2.7e-58 229.9 343 49.9
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 3.5e-58 229.6 334 54.8
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 7.8e-58 228.4 356 44.1
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.0e-57 228.0 337 52.2
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 2.5e-56 223.4 354 47.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 2.5e-56 223.4 323 53.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 3.3e-56 223.0 312 51.6
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.3e-56 222.6 361 48.2
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 7.3e-56 221.9 337 49.9
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 4.7e-55 219.2 344 50.6
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 6.2e-55 218.8 325 44.9
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.1e-54 218.0 265 60.4
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.4e-54 217.6 401 47.9
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.0e-54 216.1 344 50.3
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 5.2e-54 215.7 321 51.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.9e-54 214.9 344 51.5
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.5e-53 214.2 351 50.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 3.4e-53 213.0 340 50.0
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 5.8e-53 212.2 369 45.8
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 9.9e-53 211.5 339 49.3
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.3e-52 211.1 331 52.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.7e-52 210.7 289 54.3
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.4e-51 207.6 337 47.2
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 1.4e-51 207.6 337 47.2
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 2.4e-51 206.8 324 44.1
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 3.2e-51 206.5 266 56.4
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 3.2e-51 206.5 352 48.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.4e-51 205.7 344 52.3
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 9.2e-51 204.9 341 49.6
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 9.2e-51 204.9 341 49.6
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 9.2e-51 204.9 341 49.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 9.2e-51 204.9 326 46.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-50 204.5 327 44.0
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.6e-50 204.1 353 47.6
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 2.7e-50 203.4 312 51.3
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 4.6e-50 202.6 341 51.9
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 4.6e-50 202.6 333 47.1
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 4.6e-50 202.6 330 46.4
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.6e-50 202.6 332 48.2
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.6e-50 202.6 332 46.1
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 4.6e-50 202.6 290 53.1
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 6.0e-50 202.2 283 56.5
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 1.0e-49 201.4 334 50.6
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 1.3e-49 201.1 329 48.6
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.7e-49 200.7 303 43.6
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 3.0e-49 199.9 327 47.4
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 3.0e-49 199.9 307 46.3
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 5.1e-49 199.1 343 50.4
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 5.1e-49 199.1 330 48.8
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.1e-49 199.1 306 45.1
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 5.1e-49 199.1 329 43.5
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.5e-48 197.6 319 48.6
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-48 196.4 353 47.3
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 4.3e-48 196.1 337 47.2
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 5.6e-48 195.7 329 46.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 9.6e-48 194.9 329 48.9
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.6e-47 193.0 260 53.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 4.7e-47 192.6 333 48.6
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.4e-46 191.0 343 53.6
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 2.0e-45 187.2 322 53.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 4.4e-45 186.0 300 42.7
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.7e-44 184.1 301 45.8
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.9e-44 183.3 301 45.8
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.4e-43 180.3 145 65.5
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 2.7e-42 176.8 329 43.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 7.8e-42 175.3 352 42.0
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.1e-40 171.4 340 46.8
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 9.6e-40 168.3 360 43.3
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 1.1e-38 164.9 352 47.4
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 4.0e-38 162.9 291 41.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.4e-37 159.8 264 51.1
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 4.5e-37 159.5 270 44.1
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 5.8e-37 159.1 307 47.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-36 156.8 230 50.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 1.9e-35 154.1 275 45.5
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 2.4e-35 153.7 299 41.8
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 4.2e-35 152.9 316 47.2
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.2e-35 152.9 346 43.6
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.2e-35 152.9 348 44.0
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 5.4e-35 152.5 162 53.1
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 7.1e-35 152.1 321 41.7
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.6e-34 151.0 251 45.8
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.9e-32 144.1 365 40.3
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 4.8e-31 139.4 319 39.8
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.1e-30 138.3 111 64.9
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-30 137.9 303 43.6
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 1.2e-29 134.8 267 40.8
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.6e-29 133.7 203 43.8
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 3.4e-29 133.3 307 40.4
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 2.2e-28 130.6 233 47.2
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.8e-28 129.8 319 38.2
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.7e-26 123.6 247 41.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.1e-25 119.4 212 42.0
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.8e-23 113.6 336 35.1
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.7e-23 113.2 159 44.0
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.5e-21 107.8 270 37.8
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.4e-21 106.7 146 44.5
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 5.5e-19 99.4 150 44.0
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.5e-19 99.4 90 58.9
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.3e-12 78.2 159 39.0
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.8e-12 76.6 339 34.8
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 2.7e-10 70.5 347 32.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 8.2e-07 58.9 327 36.1


User provided reference genes

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