Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.8e-51 205.7 107 100.0
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 4.0e-43 177.9 107 87.9
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 2.5e-37 158.7 107 74.8
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 7.3e-37 157.1 107 74.8
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 9.9e-34 146.7 107 72.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 1.7e-33 146.0 107 70.1
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 2.9e-33 145.2 107 72.9
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 2.9e-33 145.2 107 71.0
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 4.2e-32 141.4 100 71.0
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 5.4e-32 141.0 107 70.1
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 7.1e-32 140.6 107 69.2
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 9.3e-32 140.2 99 69.7
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.2e-31 139.8 107 68.2
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 1.2e-31 139.8 103 70.9
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.6e-31 139.4 107 64.5
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.1e-31 139.0 107 68.2
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 2.7e-31 138.7 108 68.5
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 4.6e-31 137.9 104 65.4
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 4.6e-31 137.9 92 73.9
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 68.2
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 7.8e-31 137.1 107 63.6
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 7.8e-31 137.1 93 75.3
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 1.0e-30 136.7 105 65.7
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.3e-30 135.6 104 64.4
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 62.6
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 105 66.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 3.0e-30 135.2 109 67.0
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.9e-30 134.8 106 67.0
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 66.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 68.2
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 5.1e-30 134.4 107 67.3
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 6.6e-30 134.0 106 67.0
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.1e-29 133.3 105 68.6
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 1.1e-29 133.3 103 64.1
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.1e-29 133.3 103 64.1
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 1.1e-29 133.3 107 65.4
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.5e-29 132.9 114 63.2
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 67.0
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 61.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 1.5e-29 132.9 107 61.7
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.5e-29 132.1 104 62.5
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 3.3e-29 131.7 106 67.0
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 4.3e-29 131.3 107 62.6
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 5.6e-29 131.0 93 66.7
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 5.6e-29 131.0 102 62.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 61.7
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 7.3e-29 130.6 101 68.3
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 9.6e-29 130.2 93 66.7
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 9.6e-29 130.2 93 66.7
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 61.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 9.6e-29 130.2 104 61.5
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 1.3e-28 129.8 105 63.8
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 1.6e-28 129.4 104 66.3
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 66.4
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 1.6e-28 129.4 120 62.5
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 2.1e-28 129.0 93 65.6
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.1e-28 129.0 103 63.1
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.8e-28 128.6 104 66.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.8e-28 128.6 104 66.3
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 2.8e-28 128.6 107 65.4
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.6e-28 128.3 93 66.7
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 3.6e-28 128.3 101 62.4
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 3.6e-28 128.3 101 66.3
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 4.8e-28 127.9 93 64.5
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.8e-28 127.9 128 57.8
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 4.8e-28 127.9 93 66.7
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 6.2e-28 127.5 93 74.2
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 6.2e-28 127.5 105 61.9
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 8.1e-28 127.1 93 66.7
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 8.1e-28 127.1 93 65.6
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 8.1e-28 127.1 104 59.6
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 1.4e-27 126.3 125 53.6
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.8e-27 125.9 93 63.4
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.8e-27 125.9 93 63.4
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.8e-27 125.9 93 63.4
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.8e-27 125.9 84 73.8
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.8e-27 125.9 101 65.3
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-27 125.6 101 63.4
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-27 125.6 101 63.4
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 2.4e-27 125.6 105 60.0
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.1e-27 125.2 107 60.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 3.1e-27 125.2 104 60.6
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 4.0e-27 124.8 103 62.1
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 5.3e-27 124.4 93 62.4
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 5.3e-27 124.4 88 67.0
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 1.2e-26 123.2 92 64.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 1.2e-26 123.2 92 64.1
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.2e-26 123.2 107 57.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.2e-26 123.2 101 61.4
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.2e-26 123.2 107 57.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.5e-26 122.9 98 67.3
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 61.7
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 1.5e-26 122.9 107 61.7
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 2.0e-26 122.5 100 65.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 3.4e-26 121.7 101 59.4
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 3.4e-26 121.7 103 63.1
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 4.5e-26 121.3 97 59.8
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 4.5e-26 121.3 101 61.4
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 4.5e-26 121.3 102 60.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 4.5e-26 121.3 97 60.8
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 5.8e-26 120.9 98 61.2
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 7.6e-26 120.6 87 65.5
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 7.6e-26 120.6 93 63.4
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 9.9e-26 120.2 107 61.7
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.3e-25 119.8 93 62.4
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.3e-25 119.8 103 63.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.7e-25 119.4 93 60.2
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 1.7e-25 119.4 107 58.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 2.2e-25 119.0 108 66.7
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 4.9e-25 117.9 104 58.7
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.9e-25 117.9 88 62.5
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 6.4e-25 117.5 108 59.3
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 6.4e-25 117.5 108 58.3
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 8.4e-25 117.1 97 57.7
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 8.4e-25 117.1 104 56.7
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 1.9e-24 115.9 95 65.3
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-24 115.5 101 57.4
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 2.4e-24 115.5 107 57.0
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 2.4e-24 115.5 92 66.3
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.4e-24 115.5 105 60.0
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.4e-24 114.4 105 59.0
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 7.1e-24 114.0 107 57.0
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 7.1e-24 114.0 101 57.4
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 7.1e-24 114.0 101 57.4
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 6.0e-23 110.9 91 57.1
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.3e-22 109.0 94 56.4
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.3e-22 109.0 100 60.0
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 3.0e-22 108.6 96 60.4
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 3.9e-22 108.2 87 69.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 8.1e-20 100.5 107 51.4
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 4.5e-18 94.7 76 69.7
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 4.9e-17 91.3 75 68.0
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.2e-16 88.2 77 59.7
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 9.3e-16 87.0 74 67.6
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 9.3e-16 87.0 66 66.7
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.1e-15 85.9 69 71.0
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 2.1e-15 85.9 75 62.7
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 2.7e-15 85.5 100 47.0
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 4.6e-15 84.7 83 53.0
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 4.6e-15 84.7 73 57.5
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 6.0e-15 84.3 75 65.3
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 6.7e-14 80.9 91 46.2
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.1e-13 80.1 62 61.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.3e-13 78.2 55 70.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 4.8e-12 74.7 83 54.2
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.7e-07 58.9 67 43.3


User provided reference genes

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