Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 1.5e-292 1008.8 527 100.0
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.5e-187 657.9 532 68.4
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 1.4e-165 587.0 562 61.7
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 3.5e-164 582.4 543 59.3
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 3.8e-163 578.9 537 60.5
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.2e-160 568.5 538 58.2
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 9.2e-157 557.8 544 59.4
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.5e-156 555.8 535 59.6
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 2.3e-152 543.1 590 53.6
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 6.8e-152 541.6 542 57.7
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.1e-149 534.3 541 58.2
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.2e-149 532.7 538 57.6
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 6.0e-148 528.5 550 56.7
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 1.5e-146 523.9 547 57.0
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.5e-146 523.1 579 54.4
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 3.4e-143 512.7 535 55.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.4e-141 507.3 544 56.2
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 7.8e-140 501.5 557 52.1
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 1.3e-139 500.7 541 56.4
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 5.1e-139 498.8 545 54.5
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 8.6e-139 498.0 543 55.2
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 4.0e-136 489.2 523 56.0
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 1.5e-135 487.3 538 55.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.4e-135 485.7 541 52.9
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.4e-135 485.7 545 54.5
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 2.2e-134 483.4 543 53.4
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 3.7e-134 482.6 537 55.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 1.9e-133 480.3 535 54.0
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 1.6e-132 477.2 454 60.6
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.6e-132 477.2 537 54.2
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 1.6e-132 477.2 577 51.1
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.3e-131 473.4 536 52.8
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 6.6e-131 471.9 523 54.5
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 1.5e-130 470.7 533 53.8
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.5e-130 469.9 539 55.7
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 7.3e-130 468.4 538 52.0
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.8e-129 466.5 533 53.7
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 4.7e-129 465.7 539 54.9
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 8.1e-129 464.9 538 51.9
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.4e-128 464.2 553 52.8
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 4.0e-128 462.6 580 49.7
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 5.2e-128 462.2 539 52.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 1.5e-127 460.7 551 51.9
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.6e-127 459.9 527 53.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 9.9e-127 458.0 540 51.9
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 1.3e-126 457.6 540 53.1
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 1.1e-125 454.5 479 54.9
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 3.2e-125 453.0 554 50.4
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.6e-124 450.7 552 49.6
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 2.1e-124 450.3 593 48.2
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 4.6e-124 449.1 542 52.4
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 6.0e-124 448.7 581 48.7
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.7e-123 447.2 499 55.3
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 1.7e-123 447.2 549 50.8
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 3.0e-123 446.4 544 50.0
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 3.9e-123 446.0 547 50.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.1e-122 444.5 543 51.2
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 6.2e-121 438.7 547 51.0
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 4.0e-120 436.0 535 50.7
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 2.0e-119 433.7 536 49.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 2.9e-118 429.9 534 50.9
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.8e-118 429.5 550 49.3
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.4e-118 428.7 570 48.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 5.4e-117 425.6 533 50.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 3.5e-116 422.9 567 48.3
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 7.9e-116 421.8 635 43.6
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 1.0e-115 421.4 549 50.1
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.0e-115 419.9 539 50.1
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 3.9e-115 419.5 547 48.8
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 8.7e-115 418.3 535 49.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 4.8e-113 412.5 534 50.2
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 1.8e-112 410.6 547 49.0
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 5.3e-112 409.1 572 47.0
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.6e-111 406.8 555 47.9
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 8.4e-110 401.7 536 48.3
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.3e-109 398.3 369 56.4
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 3.9e-107 392.9 555 47.0
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.5e-106 391.0 537 47.5
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 9.6e-106 388.3 546 46.9
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.1e-105 387.1 440 52.3
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.7e-105 386.3 538 45.5
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 5.3e-104 382.5 539 47.9
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 7.6e-103 378.6 540 47.0
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 1.4e-101 374.4 466 49.4
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 2.8e-97 360.1 531 43.3
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 5.3e-96 355.9 532 44.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.3e-94 351.3 525 44.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.7e-94 350.9 539 43.6
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 1.9e-93 347.4 564 43.4
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.1e-93 345.5 533 43.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.1e-92 344.0 542 43.2
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 4.6e-92 342.8 530 44.3
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 6.3e-89 332.4 532 43.4
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 6.3e-89 332.4 466 45.3
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 1.5e-87 327.8 587 41.6
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.0e-86 325.1 480 46.9
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 2.5e-85 320.5 531 40.5
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 3.2e-85 320.1 531 42.0
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 2.1e-84 317.4 531 40.1
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.6e-84 316.2 531 40.1
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 2.3e-83 313.9 536 42.5
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 3.0e-83 313.5 531 40.3
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 5.1e-83 312.8 378 51.6
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 6.7e-83 312.4 546 42.7
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.3e-82 309.7 290 57.6
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 9.7e-82 308.5 313 54.0
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 2.0e-79 300.8 567 40.7
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 3.0e-75 287.0 442 46.4
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.8e-73 280.4 443 46.3
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 3.5e-71 273.5 498 40.4
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 3.5e-71 273.5 498 40.4
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 5.9e-71 272.7 323 50.8
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 3.8e-70 270.0 297 52.5
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 5.2e-67 259.6 406 42.9
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 2.7e-55 220.7 479 38.2
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 5.6e-45 186.4 581 31.5
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 4.0e-43 180.3 537 31.8
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 1.2e-42 178.7 269 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 2.2e-41 174.5 582 30.6
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.4e-35 155.2 432 34.7
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 8.6e-30 136.0 173 42.2
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 8.6e-30 136.0 182 50.5
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.1e-29 135.6 256 40.6
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.1e-27 127.5 238 39.5
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 4.1e-24 117.1 217 38.7
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 3.9e-22 110.5 135 51.1
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.8e-20 104.4 198 37.4
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 3.1e-19 100.9 209 38.8
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 4.4e-18 97.1 66 68.2
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 2.4e-16 91.3 101 53.5
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 8.6e-14 82.8 168 30.4
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 8.6e-14 82.8 252 32.5
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 5.6e-13 80.1 106 50.0
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.8e-12 77.8 179 37.4
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 6.2e-12 76.6 101 47.5
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 6.4e-09 66.6 195 26.7
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 1.0e-06 59.3 37 70.3


User provided reference genes

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