Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 5.6e-30 133.7 69 100.0
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 4.0e-12 74.3 43 83.7
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 5.3e-12 73.9 43 83.7
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 5.3e-12 73.9 44 79.5
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 6.9e-12 73.6 44 79.5
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 6.9e-12 73.6 43 81.4
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 6.9e-12 73.6 43 81.4
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 6.9e-12 73.6 43 81.4
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 6.9e-12 73.6 43 81.4
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 6.9e-12 73.6 43 81.4
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 9.0e-12 73.2 43 81.4
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 9.0e-12 73.2 43 81.4
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 1.2e-11 72.8 43 81.4
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 1.2e-11 72.8 43 79.1
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 1.5e-11 72.4 44 77.3
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 1.5e-11 72.4 43 81.4
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 1.5e-11 72.4 43 81.4
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.5e-11 72.4 43 81.4
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 2.0e-11 72.0 44 77.3
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 2.0e-11 72.0 43 79.1
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 2.0e-11 72.0 43 79.1
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 2.0e-11 72.0 43 79.1
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 2.0e-11 72.0 43 79.1
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 2.6e-11 71.6 43 79.1
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 2.6e-11 71.6 43 79.1
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.6e-11 71.6 43 81.4
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 3.4e-11 71.2 43 79.1
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 3.4e-11 71.2 43 79.1
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 3.4e-11 71.2 44 77.3
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 3.4e-11 71.2 44 77.3
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 3.4e-11 71.2 43 79.1
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 3.4e-11 71.2 43 79.1
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 4.5e-11 70.9 43 81.4
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 4.5e-11 70.9 43 81.4
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 4.5e-11 70.9 43 79.1
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 4.5e-11 70.9 43 79.1
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 4.5e-11 70.9 43 79.1
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 5.8e-11 70.5 43 79.1
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 5.8e-11 70.5 43 79.1
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 5.8e-11 70.5 43 79.1
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 7.6e-11 70.1 43 76.7
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 7.6e-11 70.1 43 79.1
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 7.6e-11 70.1 43 79.1
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 7.6e-11 70.1 43 76.7
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 7.6e-11 70.1 43 79.1
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 7.6e-11 70.1 43 79.1
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 76.7
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 9.9e-11 69.7 43 79.1
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 74.4
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 1.3e-10 69.3 43 76.7
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 1.7e-10 68.9 43 76.7
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-10 68.9 43 76.7
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.7e-10 68.9 43 76.7
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 1.7e-10 68.9 43 76.7
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 1.7e-10 68.9 43 76.7
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 2.2e-10 68.6 43 76.7
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 2.2e-10 68.6 43 74.4
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 2.2e-10 68.6 43 76.7
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 2.9e-10 68.2 43 79.1
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 2.9e-10 68.2 43 76.7
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 2.9e-10 68.2 43 76.7
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 2.9e-10 68.2 44 72.7
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.8e-10 67.8 43 74.4
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 3.8e-10 67.8 43 72.1
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 4.9e-10 67.4 47 68.1
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 74.4
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 74.4
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 74.4
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 72.1
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 72.1
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 4.9e-10 67.4 43 72.1
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 8.4e-10 66.6 43 74.4
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 8.4e-10 66.6 43 74.4
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 8.4e-10 66.6 42 73.8
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 1.1e-09 66.2 43 72.1
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.1e-09 66.2 42 76.2
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 1.1e-09 66.2 43 72.1
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.1e-09 66.2 43 74.4
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 1.1e-09 66.2 43 72.1
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 1.4e-09 65.9 43 72.1
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 1.9e-09 65.5 43 72.1
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 1.9e-09 65.5 43 72.1
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 2.4e-09 65.1 43 74.4
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 2.4e-09 65.1 43 74.4
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 2.4e-09 65.1 43 72.1
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 4.2e-09 64.3 43 72.1
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 5.4e-09 63.9 43 69.8
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 5.4e-09 63.9 43 69.8
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 5.4e-09 63.9 43 69.8
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 7.1e-09 63.5 43 72.1
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 9.3e-09 63.2 43 72.1
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 9.3e-09 63.2 44 68.2
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 1.2e-08 62.8 44 72.7
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 2.1e-08 62.0 43 72.1
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 2.7e-08 61.6 43 69.8
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 4.6e-08 60.8 43 69.8
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 7.9e-08 60.1 43 60.5
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 1.3e-07 59.3 43 72.1
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.3e-07 59.3 43 65.1
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.8e-07 58.9 43 65.1
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.7e-07 56.6 45 64.4


User provided reference genes

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