Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1877 Trochodendron aralioides HOM05D002613 ORTHO05D416006 2.8e-54 215.3 132 100.0
TAR375G1154 Trochodendron aralioides HOM05D002613 ORTHO05D003140 3.4e-52 208.4 131 96.9
Dinv30285 Davidia involucrata HOM05D002613 ORTHO05D003140 1.2e-28 130.2 134 59.0
CiPaw.09G043000 Carya illinoinensis HOM05D002613 ORTHO05D003140 2.6e-20 102.4 132 48.5
Nitab4.5_0005356g0070 Nicotiana tabacum HOM05D002613 ORTHO05D003140 5.0e-19 98.2 139 47.5
Oeu042057.1 Olea europaea HOM05D002613 ORTHO05D003140 5.0e-19 98.2 133 45.1
Nitab4.5_0000771g0170 Nicotiana tabacum HOM05D002613 ORTHO05D003140 1.1e-18 97.1 140 47.1
MSTRG.17075 Avicennia marina HOM05D002613 ORTHO05D003140 2.7e-17 92.4 131 40.5
HanXRQChr04g0124961 Helianthus annuus HOM05D002613 ORTHO05D003140 1.0e-16 90.5 131 48.1
Gohir.D09G115900 Gossypium hirsutum HOM05D002613 ORTHO05D003140 2.3e-16 89.4 145 42.8
Gorai.006G134200 Gossypium raimondii HOM05D002613 ORTHO05D003140 2.3e-16 89.4 142 43.0
Medtr7g090640 Medicago truncatula HOM05D002613 ORTHO05D003140 8.8e-16 87.4 131 47.3
MBI16_g23766_MAGBIO Magnolia biondii HOM05D002613 ORTHO05D003140 2.0e-15 86.3 147 42.2
Nn1g01897 Nelumbo nucifera HOM05D002613 ORTHO05D003140 5.7e-15 84.7 136 47.8
Cfa016748 Carpinus fangiana HOM05D002613 ORTHO05D003140 1.3e-14 83.6 133 50.4
ClCG08G003410 Citrullus lanatus HOM05D002613 ORTHO05D003140 2.2e-14 82.8 138 41.3
Lj1g0008941 Lotus japonicus HOM05D002613 ORTHO05D003140 4.8e-14 81.6 134 42.5
Actinidia39191 Actinidia chinensis HOM05D002613 ORTHO05D003140 6.3e-14 81.3 131 42.0
Haze_19756 Corylus avellana HOM05D002613 ORTHO05D003140 6.3e-14 81.3 131 49.6
QL07p004674 Quercus lobata HOM05D002613 ORTHO05D003140 6.3e-14 81.3 151 35.8
Cc06_g18460 Coffea canephora HOM05D002613 ORTHO05D003140 8.2e-14 80.9 136 47.8
Ah.13g076720 Amaranthus hybridus HOM05D002613 ORTHO05D003140 1.4e-13 80.1 131 42.0
Ca_08422_v3 Cicer arietinum L. HOM05D002613 ORTHO05D003140 1.8e-13 79.7 133 43.6
MELO3C011684.2 Cucumis melo HOM05D002613 ORTHO05D003140 2.4e-13 79.3 142 40.1
Duzib128G0525 Durio zibethinus HOM05D002613 ORTHO05D003140 2.4e-13 79.3 131 40.5
Potri.006G044700 Populus trichocarpa HOM05D002613 ORTHO05D003140 3.1e-13 79.0 139 43.2
Glyma.03G132000 Glycine max HOM05D002613 ORTHO05D003140 5.3e-13 78.2 131 42.0
Gohir.A09G119700 Gossypium hirsutum HOM05D002613 ORTHO05D003140 5.3e-13 78.2 144 40.3
Thecc.05G144500 Theobroma cacao HOM05D002613 ORTHO05D003140 5.3e-13 78.2 141 39.7
Phvul.001G128000 Phaseolus vulgaris HOM05D002613 ORTHO05D003140 7.0e-13 77.8 132 43.2
unitig_22.g5420 Utricularia gibba HOM05D002613 ORTHO05D003140 7.0e-13 77.8 140 37.9
Manes.08G054900 Manihot esculenta HOM05D002613 ORTHO05D003140 9.1e-13 77.4 157 42.0
Peaxi162Scf00151g00077 Petunia axillaris HOM05D002613 ORTHO05D003140 1.2e-12 77.0 148 38.5
CAN.G619.41 Capsicum annuum HOM05D002613 ORTHO05D003140 1.6e-12 76.6 133 40.6
vmacro21953 Vaccinium macrocarpon HOM05D002613 ORTHO05D003140 2.6e-12 75.9 180 35.6
Cpa.g.sc5.216 Carica papaya HOM05D002613 ORTHO05D003140 4.5e-12 75.1 131 39.7
ECA236G1356 Erigeron canadensis HOM05D002613 ORTHO05D003140 4.5e-12 75.1 133 51.1
PSO063G3737 Papaver somniferum HOM05D002613 ORTHO05D003140 4.5e-12 75.1 137 38.0
HanXRQChr04g0121301 Helianthus annuus HOM05D002613 ORTHO05D003140 5.9e-12 74.7 131 53.4
Rhsim03G0031300 Rhododendron simsii HOM05D002613 ORTHO05D003140 1.3e-11 73.6 173 33.5
THA.LOC104803285 Tarenaya hassleriana HOM05D002613 ORTHO05D003140 1.3e-11 73.6 138 34.8
Carub.0005s2400 Capsella rubella HOM05D002613 ORTHO05D003140 2.9e-11 72.4 138 38.4
Migut.B01406 Erythranthe guttata HOM05D002613 ORTHO05D003140 2.9e-11 72.4 135 45.9
DCAR_020534 Daucus carota HOM05D002613 ORTHO05D003140 3.8e-11 72.0 137 43.1
FAN02G3333 Fragaria x ananassa HOM05D002613 ORTHO05D003140 3.8e-11 72.0 131 38.2
Lj1C1121G13 Lonicera japonica HOM05D002613 ORTHO05D003140 3.8e-11 72.0 148 45.9
Sopen04g004400 Solanum pennellii HOM05D002613 ORTHO05D003140 3.8e-11 72.0 131 48.9
Aa31LG10G12090 Aethionema arabicum HOM05D002613 ORTHO05D003140 8.5e-11 70.9 134 38.8
Lsat_1_v5_gn_8_83061 Lactuca sativa HOM05D002613 ORTHO05D003140 8.5e-11 70.9 134 49.3
CSS0039271 Camellia sinensis var. sinensis HOM05D002613 ORTHO05D003140 1.1e-10 70.5 132 40.9
Ciclev10004493m.g Citrus clementina HOM05D002613 ORTHO05D003140 1.1e-10 70.5 126 41.3
CANSAT80G1176 Cannabis sativa HOM05D002613 ORTHO05D003140 1.5e-10 70.1 135 37.0
COL.COLO4_21284 Corchorus olitorius HOM05D002613 ORTHO05D003140 1.5e-10 70.1 135 37.8
CsaV3_6G004050 Cucumis sativus L. HOM05D002613 ORTHO05D003140 1.5e-10 70.1 142 37.3
MD12G1089400 Malus domestica HOM05D002613 ORTHO05D003140 1.9e-10 69.7 132 37.9
RcHm_v2.0_Chr3g0484591 Rosa chinensis HOM05D002613 ORTHO05D003140 1.9e-10 69.7 134 36.6
AL5G38670 Arabidopsis lyrata HOM05D002613 ORTHO05D003140 2.5e-10 69.3 136 40.4
FvH4_6g24800 Fragaria vesca HOM05D002613 ORTHO05D003140 3.2e-10 68.9 131 36.6
FAN14G3278 Fragaria x ananassa HOM05D002613 ORTHO05D003140 3.2e-10 68.9 131 36.6
Sabra06G0030900 Salix brachista HOM05D002613 ORTHO05D003140 3.2e-10 68.9 140 37.9
Sed0007029 Sechium edule HOM05D002613 ORTHO05D003140 3.2e-10 68.9 139 35.3
PGSC0003DMG400032543 Solanum tuberosum HOM05D002613 ORTHO05D003140 5.5e-10 68.2 131 49.6
arahy.Tifrunner.gnm1.ann1.EM8ZKT Arachis hypogaea HOM05D002613 ORTHO05D003140 9.4e-10 67.4 144 36.1
Solyc04g009300.4 Solanum lycopersicum HOM05D002613 ORTHO05D003140 9.4e-10 67.4 132 38.6
Eucgr.A02292 Eucalyptus grandis HOM05D002613 ORTHO05D003140 1.2e-09 67.0 144 39.6
EL10Ac3g07172 Beta vulgaris HOM05D002613 ORTHO05D003140 2.7e-09 65.9 144 47.9
CANSAT80G1658 Cannabis sativa HOM05D002613 ORTHO05D003140 2.7e-09 65.9 132 35.6
CARHR167360 Cardamine hirsuta HOM05D002613 ORTHO05D003140 4.7e-09 65.1 130 39.2
Prupe.7G049400 Prunus persica HOM05D002613 ORTHO05D003140 4.7e-09 65.1 133 38.3
HPP92_003074 Vanilla planifolia HOM05D002613 ORTHO05D003140 4.7e-09 65.1 48 68.8
VMungo1383G0401 Vigna mungo HOM05D002613 ORTHO05D003140 4.7e-09 65.1 150 38.0
arahy.Tifrunner.gnm1.ann1.TE5HJ9 Arachis hypogaea HOM05D002613 ORTHO05D003140 8.0e-09 64.3 146 34.2
Sc13g0001450 Simmondsia chinensis HOM05D002613 ORTHO05D003140 8.0e-09 64.3 116 35.3
A09p50120 Brassica napus HOM05D002613 ORTHO05D003140 1.0e-08 63.9 130 37.7
BraA09t40463Z Brassica rapa HOM05D002613 ORTHO05D003140 1.0e-08 63.9 130 37.7
FAN05G3619 Fragaria x ananassa HOM05D002613 ORTHO05D003140 1.0e-08 63.9 131 36.6
Aqoxy3G02142 Aquilegia oxysepala HOM05D002613 ORTHO05D003140 1.4e-08 63.5 131 42.0
arahy.Tifrunner.gnm1.ann1.5ZDB9J Arachis hypogaea HOM05D002613 ORTHO05D003140 4.0e-08 62.0 138 37.0
BcaC07g40067 Brassica carinata HOM05D002613 ORTHO05D003140 4.0e-08 62.0 130 39.2
Lalb_Chr25g0287031 Lupinus albus HOM05D002613 ORTHO05D003140 6.7e-08 61.2 131 35.1
arahy.Tifrunner.gnm1.ann1.9G159B Arachis hypogaea HOM05D002613 ORTHO05D003140 1.2e-07 60.5 138 37.0
C08p32490 Brassica napus HOM05D002613 ORTHO05D003140 1.5e-07 60.1 143 36.4
GSVIVG01033559001 Vitis vinifera HOM05D002613 ORTHO05D003140 1.5e-07 60.1 120 36.7
BolC8t50865H Brassica oleracea HOM05D002613 ORTHO05D003140 2.6e-07 59.3 130 34.6
SGA_v2.0_scaffold5G03102 Striga asiatica HOM05D002613 ORTHO05D003140 2.6e-07 59.3 131 46.6
Thhalv10005825m.g Eutrema salsugineum HOM05D002613 ORTHO05D003140 3.3e-07 58.9 149 47.0
BcaC07g40038 Brassica carinata HOM05D002613 ORTHO05D003140 4.4e-07 58.5 131 35.9
Atru.chr1.1250 Acer truncatum HOM05D002613 ORTHO05D003140 5.7e-07 58.2 140 42.9
TWI74G1367 Tripterygium wilfordii HOM05D002613 ORTHO05D003140 5.7e-07 58.2 136 35.3
ATR0691G266 Amborella trichopoda HOM05D002613 ORTHO05D003140 2.8e-06 55.8 132 36.4
AUR62026142 Chenopodium quinoa HOM05D002613 ORTHO05D003140 2.8e-06 55.8 152 36.8
AUR62030392 Chenopodium quinoa HOM05D002613 ORTHO05D003140 4.8e-06 55.1 139 38.1
Os06g0498900 Oryza sativa ssp. japonica HOM05D002613 ORTHO05D003140 4.8e-06 55.1 147 41.5
PGR031G3576 Punica granatum HOM05D002613 ORTHO05D003140 6.3e-06 54.7 132 37.9
Cfa011070 Carpinus fangiana HOM05D002613 ORTHO05D123334 8.2e-06 54.3 94 39.4


User provided reference genes

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