Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1841 Trochodendron aralioides HOM05D008165 ORTHO05D007516 8.0e-53 211.1 201 100.0
TAR625G0094 Trochodendron aralioides HOM05D008165 ORTHO05D007516 3.1e-28 129.4 76 85.5
TAR673G0004 Trochodendron aralioides HOM05D008165 ORTHO05D007516 1.5e-27 127.1 83 78.3
TAR383G0642 Trochodendron aralioides HOM05D008165 ORTHO05D007516 1.3e-26 124.0 81 77.8
Nn8g39643 Nelumbo nucifera HOM05D008165 ORTHO05D007516 6.0e-24 115.2 82 68.3
GSVIVG01017457001 Vitis vinifera HOM05D009923 ORTHO05D007516 1.1e-17 94.4 79 62.0
Dinv38142 Davidia involucrata HOM05D008165 ORTHO05D007516 6.0e-16 88.6 83 57.8
Dinv15868 Davidia involucrata HOM05D009923 ORTHO05D007516 3.0e-15 86.3 83 57.8
GSVIVG01012854001 Vitis vinifera HOM05D008165 ORTHO05D007516 7.3e-14 81.6 81 58.0
CiPaw.08G009200 Carya illinoinensis HOM05D009923 ORTHO05D007516 9.6e-14 81.3 83 51.8
Rhsim03G0252900 Rhododendron simsii HOM05D008165 ORTHO05D007516 9.6e-14 81.3 81 56.8
CiPaw.07G225700 Carya illinoinensis HOM05D009923 ORTHO05D007516 2.4e-12 76.6 83 49.4
Manes.14G119100 Manihot esculenta HOM05D008165 ORTHO05D007516 5.3e-12 75.5 68 57.4
Potri.006G257700 Populus trichocarpa HOM05D009923 ORTHO05D007516 5.3e-12 75.5 76 50.0
MD15G1129000 Malus domestica HOM05D014178 ORTHO05D007516 6.9e-12 75.1 84 47.6
Actinidia37755 Actinidia chinensis HOM05D023807 ORTHO05D023245 1.2e-11 74.3 83 54.2
Sabra06G0201600 Salix brachista HOM05D009923 ORTHO05D007516 1.2e-11 74.3 110 41.8
Hma1.2p1_0343F.1_g130780 Hydrangea macrophylla HOM05D008165 ORTHO05D007516 1.5e-11 73.9 76 51.3
MD08G1151900 Malus domestica HOM05D014178 ORTHO05D007516 1.5e-11 73.9 84 48.8
Prupe.1G484300 Prunus persica HOM05D014178 ORTHO05D007516 2.0e-11 73.6 83 44.6
QL02p090702 Quercus lobata HOM05D008165 ORTHO05D007516 2.0e-11 73.6 69 53.6
vmacro23527 Vaccinium macrocarpon HOM05D008165 ORTHO05D007516 2.0e-11 73.6 80 52.5
QL02p021018 Quercus lobata HOM05D014178 ORTHO05D007516 4.5e-11 72.4 83 49.4
Duzib168G1698 Durio zibethinus HOM05D009923 ORTHO05D007516 5.8e-11 72.0 83 45.8
Manes.06G044400 Manihot esculenta HOM05D008165 ORTHO05D007516 1.3e-10 70.9 68 55.9
Potri.006G257800 Populus trichocarpa HOM05D009923 ORTHO05D007516 1.7e-10 70.5 79 46.8
Duzib150G0960 Durio zibethinus HOM05D008165 ORTHO05D007516 2.9e-10 69.7 69 53.6
Atru.chr7.2009 Acer truncatum HOM05D008165 ORTHO05D007516 3.8e-10 69.3 68 52.9
Aqoxy7G03599 Aquilegia oxysepala HOM05D008165 ORTHO05D007516 3.8e-10 69.3 82 50.0
RcHm_v2.0_Chr2g0087101 Rosa chinensis HOM05D008165 ORTHO05D007516 4.9e-10 68.9 86 50.0
Duzib150G1536 Durio zibethinus HOM05D009923 ORTHO05D007516 8.4e-10 68.2 83 45.8
Prupe.3G092600 Prunus persica HOM05D017007 ORTHO05D020728 1.1e-09 67.8 83 42.2
Gohir.A13G181000 Gossypium hirsutum HOM05D009923 ORTHO05D007516 1.4e-09 67.4 82 42.7
MELO3C004482.2 Cucumis melo HOM05D008165 ORTHO05D007516 2.4e-09 66.6 67 50.7
Gohir.D13G188800 Gossypium hirsutum HOM05D009923 ORTHO05D007516 2.4e-09 66.6 82 42.7
Gorai.013G214200 Gossypium raimondii HOM05D009923 ORTHO05D007516 2.4e-09 66.6 82 42.7
Gohir.D05G058501 Gossypium hirsutum HOM05D009923 ORTHO05D007516 3.2e-09 66.2 85 41.2
Lj9A703T45 Lonicera japonica HOM05D008165 ORTHO05D007516 3.2e-09 66.2 77 48.1
Thecc.09G021100 Theobroma cacao HOM05D009923 ORTHO05D007516 4.2e-09 65.9 83 43.4
ClCG11G003490 Citrullus lanatus HOM05D008165 ORTHO05D007516 5.4e-09 65.5 90 43.3
Manes.04G109000 Manihot esculenta HOM05D008165 ORTHO05D007516 5.4e-09 65.5 73 46.6
Thecc.09G137200 Theobroma cacao HOM05D008165 ORTHO05D007516 5.4e-09 65.5 69 50.7
Cfa002265 Carpinus fangiana HOM05D008165 ORTHO05D007516 9.3e-09 64.7 82 46.3
CsaV3_2G003360 Cucumis sativus L. HOM05D008165 ORTHO05D007516 9.3e-09 64.7 67 49.3
Gorai.009G059600 Gossypium raimondii HOM05D009923 ORTHO05D007516 9.3e-09 64.7 85 40.0
Dinv24981 Davidia involucrata HOM05D002641 ORTHO05D007516 1.6e-08 63.9 110 40.0
Duzib187G0069 Durio zibethinus HOM05D008165 ORTHO05D007516 1.6e-08 63.9 69 49.3
MBI14_g43135_MAGBIO Magnolia biondii HOM05D041599 ORTHO05D024923 2.1e-08 63.5 87 49.4
Gohir.D05G014200 Gossypium hirsutum HOM05D008165 ORTHO05D007516 2.7e-08 63.2 69 49.3
PGSC0003DMG400007836 Solanum tuberosum HOM05D008165 ORTHO05D007516 2.7e-08 63.2 82 45.1
CsaV3_2G003340 Cucumis sativus L. HOM05D008165 ORTHO05D007516 3.5e-08 62.8 82 43.9
Gohir.A05G013100 Gossypium hirsutum HOM05D008165 ORTHO05D007516 3.5e-08 62.8 67 49.3
PGR044G1729 Punica granatum HOM05D009923 ORTHO05D007516 3.5e-08 62.8 83 45.8
Duzib168G0348 Durio zibethinus HOM05D008165 ORTHO05D007516 4.6e-08 62.4 70 45.7
MELO3C004479.2 Cucumis melo HOM05D008165 ORTHO05D007516 6.0e-08 62.0 83 43.4
TWI34G2014 Tripterygium wilfordii HOM05D008165 ORTHO05D007516 6.0e-08 62.0 66 50.0
MBI15_g17560_MAGBIO Magnolia biondii HOM05D021041 ORTHO05D024923 7.9e-08 61.6 73 47.9
Potri.018G024000 Populus trichocarpa HOM05D009923 ORTHO05D007516 7.9e-08 61.6 79 45.6
ClCG11G003470 Citrullus lanatus HOM05D008165 ORTHO05D007516 1.0e-07 61.2 76 44.7
FAN23G0205 Fragaria x ananassa HOM05D008165 ORTHO05D007516 1.0e-07 61.2 83 47.0
Gorai.009G014200 Gossypium raimondii HOM05D008165 ORTHO05D007516 1.0e-07 61.2 68 48.5
COL.COLO4_18893 Corchorus olitorius HOM05D009923 ORTHO05D007516 1.8e-07 60.5 72 44.4
RcHm_v2.0_Chr2g0134421 Rosa chinensis HOM05D017007 ORTHO05D020728 1.8e-07 60.5 83 38.6
RcHm_v2.0_Chr6g0297441 Rosa chinensis HOM05D014178 ORTHO05D007516 2.3e-07 60.1 83 42.2
TWI63G1030 Tripterygium wilfordii HOM05D008165 ORTHO05D007516 3.0e-07 59.7 69 46.4
TWI63G1311 Tripterygium wilfordii HOM05D008165 ORTHO05D007516 3.0e-07 59.7 69 46.4
Solyc12g009860.3 Solanum lycopersicum HOM05D008165 ORTHO05D007516 3.9e-07 59.3 82 43.9
Sopen12g004750 Solanum pennellii HOM05D008165 ORTHO05D007516 3.9e-07 59.3 82 43.9
Dinv18195 Davidia involucrata HOM05D009923 ORTHO05D007516 6.7e-07 58.5 43 65.1
FvH4_1g02080 Fragaria vesca HOM05D008165 ORTHO05D007516 1.1e-06 57.8 67 49.3
FAN19G0448 Fragaria x ananassa HOM05D008165 ORTHO05D007516 1.1e-06 57.8 67 49.3
FAN27G1313 Fragaria x ananassa HOM05D014178 ORTHO05D007516 1.1e-06 57.8 83 39.8
Rhsim07G0042300 Rhododendron simsii HOM05D023807 ORTHO05D023245 1.1e-06 57.8 89 38.2
Sc23g0006620 Simmondsia chinensis HOM05D022487 ORTHO05D051007 1.1e-06 57.8 87 43.7
GSVIVG01035947001 Vitis vinifera HOM05D014178 ORTHO05D007516 1.1e-06 57.8 67 50.7
FAN26G1249 Fragaria x ananassa HOM05D008165 ORTHO05D007516 1.5e-06 57.4 83 45.8
FvH4_2g28660 Fragaria vesca HOM05D014178 ORTHO05D007516 1.9e-06 57.0 83 38.6
Sed0004036 Sechium edule HOM05D008165 ORTHO05D007516 1.9e-06 57.0 67 44.8
Prupe.7G252200 Prunus persica HOM05D008165 ORTHO05D007516 2.5e-06 56.6 67 47.8
Hund09307 Selenicereus undatus HOM05D008165 ORTHO05D007516 2.5e-06 56.6 86 43.0
HPP92_015258 Vanilla planifolia HOM05D021041 ORTHO05D030718 3.3e-06 56.2 83 42.2
MBI16_g10335_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D003525 4.3e-06 55.8 87 43.7
Hund21593 Selenicereus undatus HOM05D008165 ORTHO05D007516 4.3e-06 55.8 72 44.4
FAN24G2458 Fragaria x ananassa HOM05D014178 ORTHO05D007516 7.4e-06 55.1 83 37.3


User provided reference genes

Program Settings