Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 3.4e-147 525.0 276 100.0
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 1.4e-44 184.1 200 53.5
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.1e-43 178.7 276 45.7
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 6.1e-43 178.7 276 45.7
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 3.0e-42 176.4 281 43.8
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 3.9e-42 176.0 280 45.0
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 7.4e-41 171.8 230 47.4
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 2.8e-40 169.9 283 42.0
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 1.8e-39 167.2 283 43.8
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.6e-38 163.3 278 43.9
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 3.4e-38 162.9 273 43.6
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 3.4e-38 162.9 274 43.1
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.7e-37 160.6 166 51.2
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 2.2e-37 160.2 276 44.6
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 5.0e-37 159.1 285 42.5
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 6.5e-37 158.7 272 41.9
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 8.5e-37 158.3 276 42.4
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 1.1e-36 157.9 168 51.8
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 1.9e-36 157.1 249 41.4
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 2.5e-36 156.8 276 43.8
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 2.5e-36 156.8 272 40.1
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 3.2e-36 156.4 167 50.3
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.5e-36 155.6 290 40.0
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 4.7e-35 152.5 270 40.7
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 7.9e-35 151.8 226 46.9
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 1.0e-34 151.4 273 41.0
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 1.0e-34 151.4 226 46.9
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 2.3e-34 150.2 213 49.3
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 2.3e-34 150.2 182 48.4
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 3.0e-34 149.8 198 48.5
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 3.9e-34 149.4 291 43.0
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 6.7e-34 148.7 175 50.3
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 2.0e-33 147.1 167 52.1
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 2.6e-33 146.7 164 50.6
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 5.7e-33 145.6 272 40.4
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 7.4e-33 145.2 167 50.3
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 9.7e-33 144.8 166 48.8
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 2.2e-32 143.7 164 48.2
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 4.8e-32 142.5 275 37.5
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 4.8e-32 142.5 160 49.4
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 6.3e-32 142.1 209 45.0
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 6.3e-32 142.1 226 42.9
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 1.4e-31 141.0 172 51.7
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.4e-31 141.0 166 50.6
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.4e-31 141.0 276 36.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 1.8e-31 140.6 204 43.6
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 2.4e-31 140.2 213 43.7
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 2.4e-31 140.2 213 43.7
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 2.4e-31 140.2 168 48.2
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 2.4e-31 140.2 244 38.5
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 2.4e-31 140.2 195 44.1
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 5.3e-31 139.0 188 44.7
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 5.3e-31 139.0 168 45.8
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 1.5e-30 137.5 213 42.7
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 2.0e-30 137.1 213 43.2
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.0e-30 137.1 220 43.6
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 5.9e-30 135.6 205 43.4
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 5.9e-30 135.6 191 48.7
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 5.9e-30 135.6 198 42.4
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 5.9e-30 135.6 86 72.1
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.0e-29 134.8 280 37.9
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-29 134.8 215 41.9
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.0e-29 134.8 209 42.1
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 1.0e-29 134.8 176 50.0
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.3e-29 134.4 86 74.4
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.3e-29 134.4 166 48.2
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.7e-29 134.0 216 42.6
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 2.2e-29 133.7 286 36.7
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.2e-29 133.7 273 39.9
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.9e-29 133.3 167 44.3
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 2.9e-29 133.3 235 43.0
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 5.0e-29 132.5 249 39.4
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 5.0e-29 132.5 206 43.7
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 6.5e-29 132.1 178 46.1
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 8.5e-29 131.7 86 75.6
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 8.5e-29 131.7 166 48.2
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.1e-28 131.3 94 64.9
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 1.4e-28 131.0 210 41.4
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 3.2e-28 129.8 200 42.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 3.2e-28 129.8 199 44.7
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 4.2e-28 129.4 103 64.1
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 5.5e-28 129.0 271 37.3
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 7.2e-28 128.6 94 63.8
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 9.4e-28 128.3 163 46.6
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 9.4e-28 128.3 166 48.8
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 1.6e-27 127.5 206 42.7
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 1.6e-27 127.5 73 78.1
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.6e-27 127.5 94 63.8
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 3.6e-27 126.3 151 50.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.6e-27 126.3 149 51.7
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 4.7e-27 125.9 227 37.0
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 6.1e-27 125.6 212 41.5
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 6.1e-27 125.6 272 37.9
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 6.1e-27 125.6 96 63.5
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 8.0e-27 125.2 212 41.0
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 8.0e-27 125.2 280 35.7
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.0e-26 124.8 164 45.7
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.0e-26 124.8 96 64.6
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 1.4e-26 124.4 273 35.5
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.8e-26 124.0 168 42.3
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.8e-26 124.0 186 44.1
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.8e-26 124.0 117 56.4
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 2.3e-26 123.6 211 41.2
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 3.0e-26 123.2 225 39.6
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 3.0e-26 123.2 173 42.2
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 6.7e-26 122.1 217 40.1
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.1e-25 121.3 274 36.1
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 1.1e-25 121.3 251 38.6
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 1.5e-25 120.9 276 35.9
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 2.0e-25 120.6 210 40.0
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 5.7e-25 119.0 127 50.4
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-24 117.9 206 38.8
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 1.3e-24 117.9 206 38.8
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 1.3e-24 117.9 197 41.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.2e-24 117.1 151 48.3
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 3.7e-24 116.3 327 35.2
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 8.2e-24 115.2 110 56.4
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-23 114.8 189 41.8
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 1.1e-23 114.8 189 40.2
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 1.8e-23 114.0 190 41.6
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 2.4e-23 113.6 284 35.9
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 7.0e-23 112.1 188 39.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 7.0e-23 112.1 188 39.4
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 7.0e-23 112.1 328 32.9
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 9.1e-23 111.7 215 38.1
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 1.6e-22 110.9 175 38.3
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 5.9e-22 109.0 64 76.6
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 5.9e-22 109.0 111 50.5
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 7.7e-22 108.6 199 43.2
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 5.0e-21 105.9 77 62.3
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 3.2e-20 103.2 213 37.1
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.2e-20 103.2 74 63.5
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 4.2e-20 102.8 232 38.8
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 1.2e-19 101.3 88 56.8
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.7e-19 99.4 272 32.4
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.3e-17 93.2 89 51.7
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.0e-14 84.0 112 42.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 2.7e-14 83.6 78 53.8
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 1.0e-13 81.6 214 32.2
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.5e-12 77.0 234 33.3
Cpa.g.sc34.169 Carica papaya HOM05D004801 ORTHO05D005747 6.1e-11 72.4 158 36.1
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.7e-06 55.5 173 30.1


User provided reference genes

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