Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 0.0e+00 1243.4 700 100.0
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 0.0e+00 1243.4 700 100.0
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 2.3e-272 942.2 708 78.2
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 2.3e-179 633.3 745 50.5
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 3.2e-173 612.8 757 50.9
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 3.5e-164 582.8 898 43.1
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 6.5e-150 535.4 758 48.5
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 5.3e-144 515.8 846 44.0
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.4e-136 491.1 858 43.4
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.4e-131 474.6 692 43.5
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 2.4e-128 463.8 771 41.9
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.8e-123 447.6 711 42.3
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 3.7e-121 439.9 763 42.7
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.2e-119 434.9 938 35.8
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 3.8e-118 429.9 768 40.6
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 5.0e-118 429.5 750 41.5
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.5e-117 427.9 650 44.0
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 2.5e-117 427.2 733 39.2
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 5.5e-117 426.0 774 39.5
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.1e-116 424.1 761 40.5
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 2.6e-114 417.2 769 39.9
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.6e-114 417.2 694 42.2
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 2.8e-113 413.7 758 38.0
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.3e-113 412.5 768 39.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.1e-112 411.8 751 38.3
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 1.2e-111 408.3 781 38.2
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 4.5e-111 406.4 750 38.1
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 3.8e-110 403.3 797 38.4
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.0e-108 395.6 725 39.7
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 2.3e-107 394.0 686 39.9
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 6.8e-107 392.5 463 49.7
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 1.2e-106 391.7 749 37.4
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.5e-106 391.3 707 39.3
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 3.4e-106 390.2 881 34.8
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 4.4e-106 389.8 786 37.7
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-104 384.8 713 40.3
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.0e-102 378.6 714 39.4
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.3e-102 377.5 841 37.5
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 1.5e-101 374.8 718 39.4
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 2.8e-100 370.5 718 37.3
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 8.0e-100 369.0 829 38.6
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.0e-99 368.6 706 38.2
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 4.0e-99 366.7 393 54.2
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 8.9e-99 365.5 713 37.3
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 3.4e-98 363.6 721 37.2
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 5.7e-98 362.8 750 36.9
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.3e-94 351.7 690 38.7
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 8.6e-94 349.0 651 38.1
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.3e-93 347.1 699 38.2
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 6.8e-91 339.3 690 38.0
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 1.5e-90 338.2 739 38.0
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 3.4e-90 337.0 772 35.4
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.4e-90 337.0 749 35.0
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 4.4e-90 336.7 770 35.7
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 5.8e-90 336.3 726 36.2
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 2.2e-89 334.3 688 38.1
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 1.3e-86 325.1 719 37.6
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 6.6e-86 322.8 712 36.2
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 1.1e-83 315.5 709 35.7
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 5.2e-83 313.2 947 30.2
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 5.2e-83 313.2 839 32.2
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 8.9e-83 312.4 716 35.5
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.2e-82 312.0 718 38.4
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 1.7e-81 308.1 809 32.1
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 3.7e-81 307.0 713 34.9
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 8.3e-81 305.8 842 31.6
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-79 301.6 728 33.5
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 2.7e-79 300.8 736 34.5
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 6.0e-79 299.7 730 33.7
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.3e-78 298.5 958 31.1
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.0e-78 297.4 394 47.0
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 5.1e-78 296.6 794 32.4
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 1.5e-77 295.0 736 33.4
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.9e-77 294.7 728 33.4
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 3.6e-76 290.4 654 33.6
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 6.2e-76 289.7 717 32.6
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.4e-75 288.5 750 37.3
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.4e-75 287.7 756 37.6
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.1e-75 287.3 708 33.9
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.1e-75 287.3 780 32.4
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 1.2e-74 285.4 816 31.5
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 5.8e-74 283.1 697 38.3
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 1.3e-73 282.0 696 38.2
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 1.3e-73 282.0 718 39.0
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.1e-72 278.9 751 31.7
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.2e-72 277.3 497 39.6
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 7.1e-72 276.2 700 38.6
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.2e-71 275.4 753 33.3
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.1e-71 274.6 761 32.1
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 3.0e-70 270.8 612 35.3
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 5.1e-70 270.0 715 32.2
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.5e-69 267.7 781 32.8
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.1e-67 262.3 851 28.9
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 2.4e-67 261.2 577 36.0
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.2e-66 258.8 940 29.0
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 7.6e-66 256.1 575 35.3
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 1.3e-65 255.4 728 30.6
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.6e-63 248.4 926 31.0
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 2.4e-59 234.6 924 32.9
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.0e-58 231.5 611 38.6
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 3.8e-57 227.3 476 34.9
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 4.9e-57 226.9 745 29.3
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.4e-56 225.3 637 31.9
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 4.2e-56 223.8 739 30.0
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.1e-55 221.5 735 30.2
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 8.7e-54 216.1 735 30.2
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.5e-53 215.3 724 30.0
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 2.8e-52 211.1 744 28.8
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 4.0e-51 207.2 746 29.5
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.0e-50 204.9 727 29.2
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 3.4e-50 204.1 719 31.0
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 8.4e-49 199.5 762 29.3
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 2.4e-48 198.0 400 36.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.6e-47 195.3 317 41.6
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 1.1e-45 189.1 404 34.7
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.3e-45 187.6 773 27.8
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.2e-44 183.3 161 64.0
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.4e-43 182.2 677 28.8
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.4e-43 181.4 149 66.4
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.2e-42 179.1 753 28.2
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 4.9e-41 173.7 758 25.9
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 1.1e-40 172.6 748 28.7
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 4.6e-39 167.2 407 36.4
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 8.5e-33 146.4 291 36.1
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.2e-32 144.4 603 29.2
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.3e-30 138.3 781 26.0
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 3.1e-27 127.9 800 25.8
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 8.5e-25 119.8 120 57.5
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 8.5e-25 119.8 127 52.8
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.8e-20 104.8 534 24.3
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 5.3e-19 100.5 145 41.4
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 2.0e-18 98.6 139 46.0
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 7.7e-18 96.7 207 34.3
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 7.7e-18 96.7 93 55.9
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.7e-17 95.5 145 40.0
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 2.9e-17 94.7 646 24.6
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 8.5e-17 93.2 153 41.8
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 1.2e-15 89.4 83 50.6
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 2.7e-15 88.2 120 49.2
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 5.2e-14 84.0 156 36.5
TAR636G0481 Trochodendron aralioides HOM05D004831 ORTHO05D003975 6.7e-14 83.6 57 75.4
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 2.0e-13 82.0 102 45.1
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 2.8e-12 78.2 108 44.4
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 1.8e-11 75.5 636 22.2
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 4.5e-10 70.9 86 43.0
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 3.0e-06 58.2 70 45.7


User provided reference genes

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