Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.7e-260 902.1 444 100.0
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 2.9e-196 688.7 442 76.2
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 4.9e-196 688.0 442 75.3
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 3.9e-193 678.3 446 73.1
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-191 671.8 446 73.1
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.3e-190 667.9 442 72.4
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-189 666.4 447 74.0
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 4.5e-189 664.8 440 75.2
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 5.9e-189 664.5 442 72.2
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.3e-188 663.3 443 73.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 3.2e-187 658.7 440 73.4
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 3.0e-185 652.1 449 71.0
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.9e-185 651.7 441 70.7
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 5.1e-185 651.4 444 72.3
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 2.2e-183 646.0 442 71.9
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.8e-183 644.8 441 72.1
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.8e-182 642.9 449 71.0
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 4.1e-182 641.7 445 70.6
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 4.1e-182 641.7 442 70.4
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 3.4e-181 638.6 437 72.3
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 5.9e-181 637.9 442 69.9
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 3.8e-180 635.2 444 69.1
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 1.9e-179 632.9 443 68.8
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.2e-179 632.1 447 71.4
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 4.2e-179 631.7 442 70.4
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 9.4e-179 630.6 445 69.4
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 2.7e-178 629.0 442 69.2
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 2.0e-176 622.9 442 68.1
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 3.3e-176 622.1 415 74.2
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 4.4e-176 621.7 443 66.6
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.7e-176 621.3 442 67.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.7e-176 621.3 434 69.8
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 2.2e-175 619.4 434 68.7
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 2.8e-175 619.0 446 67.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 6.3e-175 617.8 442 67.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.1e-174 615.5 434 69.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 4.1e-174 615.1 445 67.4
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 9.1e-174 614.0 430 69.8
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.5e-173 613.2 461 67.9
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 2.0e-173 612.8 441 68.9
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 2.6e-173 612.5 445 67.0
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.9e-173 611.3 440 68.4
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 7.7e-173 610.9 443 65.7
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.9e-172 609.0 440 68.2
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.9e-172 609.0 439 67.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 5.0e-172 608.2 422 70.1
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 5.0e-172 608.2 445 67.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.4e-171 606.7 445 66.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.2e-171 605.5 445 66.7
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 4.2e-171 605.1 448 66.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-170 603.2 441 66.7
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.1e-170 602.8 411 70.6
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 2.7e-170 602.4 447 66.4
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 4.7e-170 601.7 434 66.8
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 8.0e-170 600.9 429 68.3
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 1.0e-169 600.5 435 67.6
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 2.3e-169 599.4 437 67.0
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.9e-169 598.6 445 65.2
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 6.7e-169 597.8 447 65.5
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 2.6e-168 595.9 429 68.1
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 4.4e-168 595.1 439 68.3
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 4.4e-168 595.1 401 71.8
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 4.4e-168 595.1 433 66.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 4.8e-167 591.7 439 67.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 8.2e-167 590.9 447 65.5
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 8.2e-167 590.9 447 65.5
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 8.2e-167 590.9 414 71.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 1.8e-166 589.7 431 67.7
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 4.1e-166 588.6 443 64.8
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 2.2e-164 582.8 429 66.0
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 1.9e-163 579.7 449 66.6
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 9.4e-163 577.4 443 65.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 5.2e-161 571.6 409 67.7
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 1.5e-160 570.1 448 62.1
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 5.7e-160 568.2 446 65.9
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 1.4e-158 563.5 428 66.1
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.4e-158 563.5 435 65.3
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.8e-158 563.1 456 63.4
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 2.4e-158 562.8 429 66.9
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 5.3e-158 561.6 430 65.1
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 2.0e-157 559.7 448 64.5
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.7e-157 559.3 446 63.5
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 4.5e-157 558.5 446 64.8
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 5.9e-157 558.1 448 64.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 1.0e-156 557.4 440 64.1
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 5.0e-156 555.1 422 65.4
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.5e-155 553.5 438 64.4
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.9e-155 553.1 452 64.2
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.5e-155 552.7 447 63.5
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.5e-155 552.7 429 62.9
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 2.5e-155 552.7 439 63.1
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 5.5e-155 551.6 443 64.6
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 2.1e-154 549.7 452 63.3
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 6.1e-154 548.1 431 63.6
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.0e-153 547.4 445 63.6
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.0e-153 547.4 403 65.8
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.0e-153 545.4 437 62.5
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.8e-153 544.7 435 65.3
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 6.8e-153 544.7 435 65.3
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 8.8e-153 544.3 444 64.6
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.2e-152 543.9 445 63.4
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-152 543.1 448 63.4
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 5.7e-152 541.6 444 64.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.7e-151 540.0 442 62.9
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.8e-151 539.3 413 66.1
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 5.4e-150 535.0 347 74.1
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.2e-149 533.9 444 62.6
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.2e-149 533.9 358 72.9
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.6e-149 533.5 444 62.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-149 533.1 444 64.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.0e-149 533.1 444 64.2
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 1.0e-148 530.8 443 62.8
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.3e-148 530.4 435 63.2
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.3e-148 530.4 320 80.0
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 8.6e-148 527.7 415 62.9
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 1.5e-147 526.9 440 62.5
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-147 526.2 350 71.7
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 4.2e-147 525.4 445 58.9
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.2e-144 517.3 350 70.9
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.3e-143 513.8 443 57.8
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 3.7e-143 512.3 366 70.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.0e-141 506.5 443 56.9
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.9e-140 502.3 345 67.8
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.9e-132 475.7 443 57.6
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 6.2e-130 468.4 349 65.9
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 9.5e-123 444.5 383 62.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 1.5e-120 437.2 361 63.7
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 8.1e-114 414.8 443 50.6
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 2.8e-106 389.8 316 61.7
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 2.8e-106 389.8 316 61.7
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 4.3e-99 365.9 450 46.4
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 5.6e-99 365.5 384 50.8
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 3.8e-79 299.7 233 63.1
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-71 273.9 190 70.0
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.9e-70 270.8 384 43.5
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.5e-70 270.4 249 57.0
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 9.7e-67 258.5 152 77.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.3e-58 231.5 159 67.9
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.7e-55 221.1 259 48.3
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 8.3e-42 175.6 158 57.0
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.4e-38 162.2 107 69.2
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 2.7e-32 144.1 140 57.9
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 7.7e-32 142.5 109 69.7
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 8.6e-31 139.0 110 67.3
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.2e-30 136.7 99 62.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 4.3e-14 83.6 52 71.2
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.9e-09 68.2 67 52.2


User provided reference genes

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