Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1704 Trochodendron aralioides HOM05D003927 ORTHO05D004905 3.1e-136 488.4 242 100.0
TAR625G0767 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.6e-127 459.5 230 98.7
TAR624G0604 Trochodendron aralioides HOM05D003927 ORTHO05D004905 1.3e-121 439.9 234 92.3
TAR628G0742 Trochodendron aralioides HOM05D003927 ORTHO05D004905 8.6e-118 427.2 235 89.8
Nn7g38278 Nelumbo nucifera HOM05D003927 ORTHO05D004905 4.7e-116 421.4 224 91.5
Dinv10533 Davidia involucrata HOM05D003927 ORTHO05D004905 6.4e-113 411.0 238 87.8
Actinidia22422 Actinidia chinensis HOM05D003927 ORTHO05D004905 3.2e-112 408.7 238 86.6
GSVIVG01012124001 Vitis vinifera HOM05D003927 ORTHO05D004905 3.2e-112 408.7 234 86.3
Hma1.2p1_0510F.1_g168820 Hydrangea macrophylla HOM05D003927 ORTHO05D004905 5.4e-112 407.9 235 86.8
Dinv29312 Davidia involucrata HOM05D003927 ORTHO05D004905 1.6e-111 406.4 258 80.2
Rhsim13G0129600 Rhododendron simsii HOM05D003927 ORTHO05D004905 4.6e-111 404.8 238 84.0
CiPaw.09G074500 Carya illinoinensis HOM05D003927 ORTHO05D004905 6.0e-111 404.4 238 84.5
ATR0763G183 Amborella trichopoda HOM05D003927 ORTHO05D004905 2.3e-110 402.5 222 86.5
Oeu058944.1 Olea europaea HOM05D003927 ORTHO05D004905 5.6e-109 397.9 234 83.8
Ciclev10014997m.g Citrus clementina HOM05D003927 ORTHO05D004905 2.8e-108 395.6 244 82.4
Sc24g0002980 Simmondsia chinensis HOM05D003927 ORTHO05D004905 3.6e-108 395.2 234 82.5
Thecc.02G005900 Theobroma cacao HOM05D003927 ORTHO05D004905 4.7e-108 394.8 245 80.8
Phvul.002G190700 Phaseolus vulgaris HOM05D003927 ORTHO05D004905 6.2e-108 394.4 237 83.5
Prupe.4G115400 Prunus persica HOM05D003927 ORTHO05D004905 1.1e-107 393.7 234 84.2
COL.COLO4_17634 Corchorus olitorius HOM05D003927 ORTHO05D004905 3.1e-107 392.1 221 86.0
Glyma.05G132100 Glycine max HOM05D003927 ORTHO05D004905 4.0e-107 391.7 237 83.1
VMungo0251G3294 Vigna mungo HOM05D003927 ORTHO05D004905 4.0e-107 391.7 237 82.7
CSS0033159 Camellia sinensis var. sinensis HOM05D003927 ORTHO05D004905 5.2e-107 391.3 218 88.5
Cpa.g.sc30.136 Carica papaya HOM05D003927 ORTHO05D004905 6.8e-107 391.0 236 83.1
Potri.001G159700 Populus trichocarpa HOM05D003927 ORTHO05D004905 6.8e-107 391.0 236 82.6
Ca_18249_v3 Cicer arietinum L. HOM05D003927 ORTHO05D004905 1.2e-106 390.2 237 83.1
Cc00_g22880 Coffea canephora HOM05D003927 ORTHO05D004905 1.5e-106 389.8 234 81.2
Glyma.08G086700 Glycine max HOM05D003927 ORTHO05D004905 2.0e-106 389.4 237 82.7
Manes.03G074000 Manihot esculenta HOM05D003927 ORTHO05D004905 2.0e-106 389.4 243 81.1
MD05G1248900 Malus domestica HOM05D003927 ORTHO05D004905 3.4e-106 388.7 234 82.5
arahy.Tifrunner.gnm1.ann1.YAS9I4 Arachis hypogaea HOM05D003927 ORTHO05D004905 9.8e-106 387.1 240 81.2
Duzib132G1257 Durio zibethinus HOM05D003927 ORTHO05D004905 9.8e-106 387.1 245 80.0
RcHm_v2.0_Chr5g0020631 Rosa chinensis HOM05D003927 ORTHO05D004905 9.8e-106 387.1 220 85.9
TWI15G0787 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 9.8e-106 387.1 248 77.8
Hund12931 Selenicereus undatus HOM05D003927 ORTHO05D004905 1.3e-105 386.7 235 79.6
MD10G1229400 Malus domestica HOM05D003927 ORTHO05D004905 2.2e-105 386.0 220 85.0
QL11p013470 Quercus lobata HOM05D003927 ORTHO05D004905 2.2e-105 386.0 220 86.4
Sabra01G0132300 Salix brachista HOM05D003927 ORTHO05D004905 4.9e-105 384.8 239 80.8
Aqoxy3G04338 Aquilegia oxysepala HOM05D003927 ORTHO05D004905 6.4e-105 384.4 230 80.9
CAN.G149.2 Capsicum annuum HOM05D003927 ORTHO05D004905 6.4e-105 384.4 234 81.2
THA.LOC104814353 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 6.4e-105 384.4 245 76.7
Medtr4g094668 Medicago truncatula HOM05D003927 ORTHO05D004905 8.3e-105 384.0 239 81.2
Solyc02g068530.4 Solanum lycopersicum HOM05D003927 ORTHO05D004905 8.3e-105 384.0 234 81.2
Sopen02g017670 Solanum pennellii HOM05D003927 ORTHO05D004905 8.3e-105 384.0 234 81.2
FAN25G3197 Fragaria x ananassa HOM05D003927 ORTHO05D004905 1.1e-104 383.6 234 80.8
Potri.003G074700 Populus trichocarpa HOM05D003927 ORTHO05D004905 1.1e-104 383.6 238 80.7
PGR042G2298 Punica granatum HOM05D003927 ORTHO05D004905 1.1e-104 383.6 229 82.1
arahy.Tifrunner.gnm1.ann1.QMDN7F Arachis hypogaea HOM05D003927 ORTHO05D004905 1.4e-104 383.3 240 80.8
CANSAT35G1049 Cannabis sativa HOM05D003927 ORTHO05D004905 1.4e-104 383.3 221 84.2
FAN16G1436 Fragaria x ananassa HOM05D003927 ORTHO05D004905 1.4e-104 383.3 234 80.3
PGSC0003DMG400010448 Solanum tuberosum HOM05D003927 ORTHO05D004905 1.4e-104 383.3 222 83.8
SGA_v2.0_scaffold175G39352 Striga asiatica HOM05D003927 ORTHO05D004905 1.4e-104 383.3 234 77.8
Cfa000676 Carpinus fangiana HOM05D003927 ORTHO05D004905 1.9e-104 382.9 237 82.3
Duzib248G0257 Durio zibethinus HOM05D003927 ORTHO05D004905 1.9e-104 382.9 244 79.9
Lalb_Chr07g0188401 Lupinus albus HOM05D003927 ORTHO05D004905 1.9e-104 382.9 240 81.7
TPR.G2935 Trifolium pratense HOM05D003927 ORTHO05D004905 4.1e-104 381.7 222 84.7
MELO3C007022.2 Cucumis melo HOM05D003927 ORTHO05D004905 1.2e-103 380.2 250 76.4
CsaV3_6G052860 Cucumis sativus L. HOM05D003927 ORTHO05D004905 1.2e-103 380.2 250 76.4
Lj4g0018518 Lotus japonicus HOM05D003927 ORTHO05D004905 1.2e-103 380.2 240 80.4
PSO675G6709 Papaver somniferum HOM05D003927 ORTHO05D004905 1.2e-103 380.2 218 84.4
DCAR_003771 Daucus carota HOM05D003927 ORTHO05D004905 2.7e-103 379.0 222 83.3
Peaxi162Scf00199g00517 Petunia axillaris HOM05D003927 ORTHO05D004905 2.7e-103 379.0 219 84.0
Gohir.D12G047200 Gossypium hirsutum HOM05D003927 ORTHO05D004905 6.0e-103 377.9 253 76.3
Gorai.008G049800 Gossypium raimondii HOM05D003927 ORTHO05D004905 6.0e-103 377.9 253 76.3
TWI38G0647 Tripterygium wilfordii HOM05D003927 ORTHO05D004905 6.0e-103 377.9 218 83.9
Atru.chr10.419 Acer truncatum HOM05D003927 ORTHO05D004905 7.8e-103 377.5 246 76.4
MSTRG.7601 Avicennia marina HOM05D003927 ORTHO05D004905 7.8e-103 377.5 222 82.0
ClCG01G025630 Citrullus lanatus HOM05D003927 ORTHO05D004905 7.8e-103 377.5 250 76.0
EL10Ac7g16905 Beta vulgaris HOM05D003927 ORTHO05D004905 1.0e-102 377.1 222 82.0
Sabra03G0045400 Salix brachista HOM05D003927 ORTHO05D004905 1.3e-102 376.7 239 79.9
SGA_v2.0_scaffold298G47698 Striga asiatica HOM05D003927 ORTHO05D004905 1.3e-102 376.7 244 75.8
Gorai.005G268300 Gossypium raimondii HOM05D003927 ORTHO05D004905 1.7e-102 376.3 235 78.7
AUR62006193 Chenopodium quinoa HOM05D003927 ORTHO05D004905 2.3e-102 375.9 222 82.4
Gohir.A12G048400 Gossypium hirsutum HOM05D003927 ORTHO05D004905 3.0e-102 375.6 251 76.5
PSO541G2426 Papaver somniferum HOM05D003927 ORTHO05D004905 6.6e-102 374.4 218 83.5
Sed0013384 Sechium edule HOM05D003927 ORTHO05D004905 8.6e-102 374.0 243 76.1
Eucgr.E04308 Eucalyptus grandis HOM05D003927 ORTHO05D004905 4.3e-101 371.7 218 83.0
Thhalv10007394m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.2e-100 370.2 222 79.7
CARHR129180 Cardamine hirsuta HOM05D003927 ORTHO05D004905 2.8e-100 369.0 242 75.6
CDE01G0678 Ceratophyllum demersum HOM05D000154 ORTHO05D004905 2.8e-100 369.0 239 76.2
FvH4_3g12660 Fragaria vesca HOM05D003927 ORTHO05D004905 3.6e-100 368.6 235 78.7
AT1G31070 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 4.7e-100 368.2 222 78.8
Lsat_1_v5_gn_2_61101 Lactuca sativa HOM05D003927 ORTHO05D004905 4.7e-100 368.2 220 80.0
AL4G31040 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 6.2e-100 367.9 245 75.5
Migut.M01998 Erythranthe guttata HOM05D003927 ORTHO05D004905 8.1e-100 367.5 215 81.9
Ah.08g210510 Amaranthus hybridus HOM05D003927 ORTHO05D004905 1.1e-99 367.1 214 82.7
ECA238G4411 Erigeron canadensis HOM05D003927 ORTHO05D004905 1.1e-99 367.1 218 80.3
Sp4g17300 Schrenkiella parvula HOM05D003927 ORTHO05D004905 1.1e-99 367.1 222 79.3
AL1G45460 Arabidopsis lyrata HOM05D003927 ORTHO05D004905 1.8e-99 366.3 222 77.9
BcaB07g32771 Brassica carinata HOM05D003927 ORTHO05D004905 2.3e-99 365.9 222 78.8
Psat7g088440 Pisum sativum HOM05D003927 ORTHO05D004905 3.1e-99 365.5 239 77.0
Lj1C1147G9 Lonicera japonica HOM05D003927 ORTHO05D004905 4.0e-99 365.2 208 84.6
Carub.0001s2946 Capsella rubella HOM05D003927 ORTHO05D004905 5.2e-99 364.8 222 77.0
CANSAT64G2986 Cannabis sativa HOM05D003927 ORTHO05D004905 6.8e-99 364.4 224 81.2
Os08g0206900 Oryza sativa ssp. japonica HOM05D003927 ORTHO05D004905 6.8e-99 364.4 222 79.3
Sp1g26910 Schrenkiella parvula HOM05D003927 ORTHO05D004905 6.8e-99 364.4 223 78.9
AT2G35020 Arabidopsis thaliana HOM05D003927 ORTHO05D004905 8.9e-99 364.0 249 73.5
CARHR030580 Cardamine hirsuta HOM05D003927 ORTHO05D004905 8.9e-99 364.0 218 78.9
THA.LOC104798559 Tarenaya hassleriana HOM05D003927 ORTHO05D004905 8.9e-99 364.0 249 74.3
BraA09t39043Z Brassica rapa HOM05D003927 ORTHO05D004905 1.2e-98 363.6 222 77.5
Aa31LG9G16190 Aethionema arabicum HOM05D003927 ORTHO05D004905 1.5e-98 363.2 248 74.2
Thhalv10016553m.g Eutrema salsugineum HOM05D003927 ORTHO05D004905 1.5e-98 363.2 222 80.2
BcaC05g27140 Brassica carinata HOM05D003927 ORTHO05D004905 2.0e-98 362.8 222 77.5
A09p35130 Brassica napus HOM05D003927 ORTHO05D004905 2.0e-98 362.8 222 77.5
C05p30260 Brassica napus HOM05D003927 ORTHO05D004905 2.0e-98 362.8 222 77.5
BolC5t31766H Brassica oleracea HOM05D003927 ORTHO05D004905 2.0e-98 362.8 222 77.5
BcaB04g18183 Brassica carinata HOM05D003927 ORTHO05D004905 3.4e-98 362.1 222 78.4
HanXRQChr14g0440241 Helianthus annuus HOM05D003927 ORTHO05D004905 2.2e-97 359.4 218 79.4
Carub.0004s1671 Capsella rubella HOM05D003927 ORTHO05D004905 4.9e-97 358.2 222 78.8
BcaC07g37780 Brassica carinata HOM05D003927 ORTHO05D004905 8.3e-97 357.5 223 77.6
BolC8t48168H Brassica oleracea HOM05D003927 ORTHO05D004905 8.3e-97 357.5 223 77.6
A08p10790 Brassica napus HOM05D003927 ORTHO05D004905 1.4e-96 356.7 223 77.6
BraA08t33076Z Brassica rapa HOM05D003927 ORTHO05D004905 1.4e-96 356.7 223 77.6
Zm00001eb070940 Zea mays HOM05D003927 ORTHO05D004905 9.2e-96 354.0 222 77.5
Zm00001eb413790 Zea mays HOM05D003927 ORTHO05D004905 1.2e-95 353.6 222 76.1
Zm00001eb430780 Zea mays HOM05D003927 ORTHO05D004905 1.2e-95 353.6 222 77.5
BcaC02g11582 Brassica carinata HOM05D003927 ORTHO05D004905 1.6e-95 353.2 223 77.1
A05p10690 Brassica napus HOM05D003927 ORTHO05D004905 2.7e-95 352.4 231 74.9
BcaB02g09488 Brassica carinata HOM05D003927 ORTHO05D004905 3.5e-95 352.1 223 76.7
BolC4t22968H Brassica oleracea HOM05D003927 ORTHO05D004905 4.6e-95 351.7 223 76.7
Haze_06142 Corylus avellana HOM05D003927 ORTHO05D004905 6.0e-95 351.3 295 65.1
C04p13780 Brassica napus HOM05D003927 ORTHO05D004905 7.8e-95 350.9 223 76.7
BraA05t20009Z Brassica rapa HOM05D003927 ORTHO05D004905 1.0e-94 350.5 222 77.0
Gohir.D02G239900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.7e-94 349.7 247 72.5
CDE12G0287 Ceratophyllum demersum HOM05D003927 ORTHO05D004905 8.6e-94 347.4 240 73.3
HanXRQChr15g0483481 Helianthus annuus HOM05D003927 ORTHO05D004905 1.9e-93 346.3 218 75.7
SalBow8G3138 Salvia bowleyana HOM05D003927 ORTHO05D004905 7.3e-93 344.4 234 74.4
Lj2A344G38 Lonicera japonica HOM05D003927 ORTHO05D004905 7.6e-90 334.3 184 87.0
AUR62037029 Chenopodium quinoa HOM05D003927 ORTHO05D004905 9.9e-90 334.0 228 73.7
Aa31LG2G15040 Aethionema arabicum HOM05D003927 ORTHO05D004905 4.2e-88 328.6 308 57.5
HPP92_026365 Vanilla planifolia HOM05D003927 ORTHO05D004905 9.3e-88 327.4 238 72.3
Mapoly0089s0037 Marchantia polymorpha HOM05D003927 ORTHO05D004905 3.6e-84 315.5 233 67.4
HPP92_016424 Vanilla planifolia HOM05D003927 ORTHO05D004905 5.8e-82 308.1 193 80.3
FAN21G3157 Fragaria x ananassa HOM05D003927 ORTHO05D004905 4.9e-81 305.1 234 67.9
unitig_748.g7494 Utricularia gibba HOM05D003927 ORTHO05D004905 4.6e-79 298.5 228 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1916 Anthoceros agrestis HOM05D003927 ORTHO05D004905 1.0e-78 297.4 229 64.6
SMO351G0243 Selaginella moellendorffii HOM05D003927 ORTHO05D004905 2.8e-76 289.3 220 65.9
MBI18_g31367_MAGBIO Magnolia biondii HOM05D003927 ORTHO05D004905 3.1e-67 259.2 220 62.7
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 5.8e-66 255.0 349 43.6
Gohir.A03G217900 Gossypium hirsutum HOM05D003927 ORTHO05D004905 1.7e-65 253.4 143 83.9
Nitab4.5_0000443g0090 Nicotiana tabacum HOM05D003927 ORTHO05D004905 4.6e-63 245.4 225 60.9
PGR004G1431 Punica granatum HOM05D003927 ORTHO05D004905 2.3e-62 243.0 134 85.8
Cre07.g345300 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D004905 1.2e-47 194.1 209 47.8
GSVIVG01006086001 Vitis vinifera HOM05D003927 ORTHO05D004905 6.1e-47 191.8 120 83.3
MCO02G083 Micromonas commoda HOM05D003927 ORTHO05D004905 1.1e-45 187.6 226 42.5
Cfa023099 Carpinus fangiana HOM05D003927 ORTHO05D004905 2.4e-43 179.9 217 42.9
CBR_g45707 Chara braunii HOM05D003927 ORTHO05D004905 3.1e-43 179.5 155 55.5
Nitab4.5_0006246g0020 Nicotiana tabacum HOM05D003927 ORTHO05D004905 2.6e-42 176.4 101 83.2
Atru.ctg1436.5 Acer truncatum HOM05D003927 ORTHO05D004905 1.9e-40 170.2 234 38.9
Haze_26176 Corylus avellana HOM05D003927 ORTHO05D004905 3.6e-39 166.0 224 40.2
AagrBONN_evm.TU.Sc2ySwM_228.1844 Anthoceros agrestis HOM05D007300 ORTHO05D004905 1.6e-34 150.6 243 37.4
SEGI_01058 Sequoiadendron giganteum HOM05D003927 ORTHO05D004905 8.5e-33 144.8 84 78.6
SEGI_28054 Sequoiadendron giganteum HOM05D003927 ORTHO05D022820 1.1e-32 144.4 113 66.4
Pp3c4_17200 Physcomitrium patens HOM05D003927 ORTHO05D004905 1.5e-32 144.1 239 37.7
PRCOL_00005739 Prasinoderma coloniale HOM05D003927 ORTHO05D004905 2.7e-31 139.8 216 37.0
Mapoly0019s0078 Marchantia polymorpha HOM05D007300 ORTHO05D009301 3.3e-29 132.9 156 46.8
Pp3c15_14250 Physcomitrium patens HOM05D007300 ORTHO05D009301 1.7e-28 130.6 246 32.9
VMungo1309G2465 Vigna mungo HOM05D003927 ORTHO05D022820 7.0e-27 125.2 123 60.2
Gohir.A03G217950 Gossypium hirsutum HOM05D003927 ORTHO05D022820 5.2e-22 109.0 73 76.7
Zm00001eb018150 Zea mays HOM05D003927 ORTHO05D001645 4.8e-20 102.4 95 53.7
Cre16.g696000 Chlamydomonas reinhardtii HOM05D003927 ORTHO05D138947 8.8e-14 81.6 167 34.1
HanXRQChr02g0052471 Helianthus annuus HOM05D003927 ORTHO05D022820 9.8e-13 78.2 56 67.9
HanXRQChr08g0234841 Helianthus annuus HOM05D003927 ORTHO05D022820 1.7e-12 77.4 50 72.0
HanXRQChr11g0327571 Helianthus annuus HOM05D003927 ORTHO05D227544 3.1e-11 73.2 46 73.9
SEGI_38698 Sequoiadendron giganteum HOM05D007300 ORTHO05D009301 2.7e-10 70.1 144 31.2
QL11p013429 Quercus lobata HOM05D003927 ORTHO05D022820 1.7e-09 67.4 37 83.8
CBR_g38016 Chara braunii HOM05D004195 ORTHO05D005309 2.3e-09 67.0 227 29.5
Zm00001eb085490 Zea mays HOM05D003927 ORTHO05D004905 2.3e-09 67.0 33 87.9
Zm00001eb188860 Zea mays HOM05D003927 ORTHO05D004905 2.3e-09 67.0 33 87.9
Zm00001eb010380 Zea mays HOM05D003927 ORTHO05D004905 8.6e-09 65.1 33 84.8
CARHR125140 Cardamine hirsuta HOM05D003927 ORTHO05D004905 7.3e-08 62.0 45 62.2
SGA_v2.0_scaffold638G53308 Striga asiatica HOM05D003927 ORTHO05D004905 8.9e-06 55.1 27 85.2


User provided reference genes

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