Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1557 Trochodendron aralioides HOM05D002364 ORTHO05D415833 1.2e-61 239.6 119 100.0
TAR624G0815 Trochodendron aralioides HOM05D002364 ORTHO05D002540 3.4e-11 72.0 52 78.8
Dinv08785 Davidia involucrata HOM05D002364 ORTHO05D002540 1.0e-10 70.5 52 71.2
QL08p041406 Quercus lobata HOM05D002364 ORTHO05D002540 3.2e-09 65.5 52 71.2
Ciclev10016120m.g Citrus clementina HOM05D002364 ORTHO05D002540 4.2e-09 65.1 51 68.6
MELO3C019760.2 Cucumis melo HOM05D002364 ORTHO05D002540 1.2e-08 63.5 42 71.4
PSO675G7331 Papaver somniferum HOM05D002364 ORTHO05D002540 1.2e-08 63.5 53 64.2
Sed0010986 Sechium edule HOM05D002364 ORTHO05D002540 1.6e-08 63.2 34 91.2
MD09G1239500 Malus domestica HOM05D002364 ORTHO05D002540 2.7e-08 62.4 52 67.3
ATR0602G063 Amborella trichopoda HOM05D002364 ORTHO05D002540 3.6e-08 62.0 52 67.3
CSS0000380 Camellia sinensis var. sinensis HOM05D002364 ORTHO05D002540 3.6e-08 62.0 52 65.4
Hma1.2p1_0178F.1_g078970 Hydrangea macrophylla HOM05D002364 ORTHO05D002540 3.6e-08 62.0 52 71.2
COL.COLO4_33546 Corchorus olitorius HOM05D002364 ORTHO05D002540 6.1e-08 61.2 51 66.7
CsaV3_6G018490 Cucumis sativus L. HOM05D002364 ORTHO05D002540 6.1e-08 61.2 35 80.0
FvH4_6g27130 Fragaria vesca HOM05D002364 ORTHO05D002540 6.1e-08 61.2 35 80.0
FAN09G3060 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.1e-08 61.2 35 80.0
FAN09G4488 Fragaria x ananassa HOM05D002364 ORTHO05D002540 6.1e-08 61.2 35 80.0
Prupe.2G061900 Prunus persica HOM05D002364 ORTHO05D002540 6.1e-08 61.2 52 65.4
Rhsim04G0074000 Rhododendron simsii HOM05D002364 ORTHO05D002540 6.1e-08 61.2 52 65.4
AL5G40360 Arabidopsis lyrata HOM05D002364 ORTHO05D002540 7.9e-08 60.8 34 82.4
BcaC02g10018 Brassica carinata HOM05D002364 ORTHO05D002540 7.9e-08 60.8 34 85.3
C04p33920 Brassica napus HOM05D002364 ORTHO05D002540 7.9e-08 60.8 34 85.3
BolC4t24959H Brassica oleracea HOM05D002364 ORTHO05D002540 7.9e-08 60.8 34 85.3
MD17G1232600 Malus domestica HOM05D002364 ORTHO05D002540 7.9e-08 60.8 52 65.4
Nn1g09092 Nelumbo nucifera HOM05D002364 ORTHO05D002540 7.9e-08 60.8 52 65.4
GSVIVG01020685001 Vitis vinifera HOM05D002364 ORTHO05D002540 7.9e-08 60.8 52 65.4
Carub.0005s2536 Capsella rubella HOM05D002364 ORTHO05D002540 1.0e-07 60.5 34 82.4
MBI07_g21391_MAGBIO Magnolia biondii HOM05D002364 ORTHO05D002540 1.0e-07 60.5 52 67.3
Potri.013G117900 Populus trichocarpa HOM05D002364 ORTHO05D002540 1.0e-07 60.5 52 65.4
Sp5g04270 Schrenkiella parvula HOM05D002364 ORTHO05D002540 1.0e-07 60.5 34 82.4
THA.LOC104823209 Tarenaya hassleriana HOM05D002364 ORTHO05D002540 1.0e-07 60.5 52 69.2
Thecc.01G148600 Theobroma cacao HOM05D002364 ORTHO05D002540 1.0e-07 60.5 53 66.0
Atru.chr6.2813 Acer truncatum HOM05D002364 ORTHO05D002540 1.4e-07 60.1 52 69.2
Aa31LG10G13170 Aethionema arabicum HOM05D002364 ORTHO05D002540 1.4e-07 60.1 54 63.0
Sabra19G0100200 Salix brachista HOM05D002364 ORTHO05D002540 1.4e-07 60.1 52 67.3
Sabra19G0103400 Salix brachista HOM05D002364 ORTHO05D002540 1.4e-07 60.1 52 67.3
CARHR168990 Cardamine hirsuta HOM05D002364 ORTHO05D002540 1.8e-07 59.7 34 82.4
FAN02G4503 Fragaria x ananassa HOM05D002364 ORTHO05D002540 1.8e-07 59.7 35 77.1
unitig_22.g6222 Utricularia gibba HOM05D002364 ORTHO05D002540 1.8e-07 59.7 39 79.5
BcaB02g08247 Brassica carinata HOM05D002364 ORTHO05D002540 2.3e-07 59.3 50 72.0
BcaB02g08254 Brassica carinata HOM05D002364 ORTHO05D002540 2.3e-07 59.3 50 72.0
FAN14G0453 Fragaria x ananassa HOM05D002364 ORTHO05D002540 2.3e-07 59.3 35 77.1
SGA_v2.0_scaffold201G41363 Striga asiatica HOM05D002364 ORTHO05D002540 2.3e-07 59.3 32 84.4
A04p02480 Brassica napus HOM05D002364 ORTHO05D002540 3.0e-07 58.9 50 70.0
BraA04t15976Z Brassica rapa HOM05D002364 ORTHO05D002540 3.0e-07 58.9 50 70.0
Migut.M00254 Erythranthe guttata HOM05D002364 ORTHO05D002540 3.0e-07 58.9 52 65.4
Haze_13349 Corylus avellana HOM05D002364 ORTHO05D002540 3.9e-07 58.5 52 65.4
Glyma.12G209800 Glycine max HOM05D002364 ORTHO05D002540 3.9e-07 58.5 52 65.4
Lj3g0014209 Lotus japonicus HOM05D002364 ORTHO05D002540 3.9e-07 58.5 52 65.4
RcHm_v2.0_Chr2g0128491 Rosa chinensis HOM05D002364 ORTHO05D002540 3.9e-07 58.5 52 63.5
RcHm_v2.0_Chr2g0129091 Rosa chinensis HOM05D002364 ORTHO05D002540 3.9e-07 58.5 52 63.5
AUR62038921 Chenopodium quinoa HOM05D002364 ORTHO05D002540 5.1e-07 58.2 35 77.1
AUR62038996 Chenopodium quinoa HOM05D002364 ORTHO05D002540 5.1e-07 58.2 35 77.1
Ca_01461_v3 Cicer arietinum L. HOM05D002364 ORTHO05D002540 5.1e-07 58.2 52 67.3
Actinidia39341 Actinidia chinensis HOM05D002364 ORTHO05D002540 6.7e-07 57.8 52 65.4
ClCG02G017940 Citrullus lanatus HOM05D002364 ORTHO05D002540 6.7e-07 57.8 52 63.5
Thhalv10006125m.g Eutrema salsugineum HOM05D002364 ORTHO05D002540 6.7e-07 57.8 49 65.3
Manes.13G137900 Manihot esculenta HOM05D002364 ORTHO05D002540 6.7e-07 57.8 52 63.5
Potri.019G089800 Populus trichocarpa HOM05D002364 ORTHO05D002540 6.7e-07 57.8 52 63.5
TWI59G0297 Tripterygium wilfordii HOM05D006652 ORTHO05D008645 6.7e-07 57.8 52 59.6
CANSAT64G1759 Cannabis sativa HOM05D002364 ORTHO05D002540 8.8e-07 57.4 52 61.5
PGR042G2102 Punica granatum HOM05D002364 ORTHO05D002540 8.8e-07 57.4 51 62.7
VMungo1080G1187 Vigna mungo HOM05D002364 ORTHO05D002540 8.8e-07 57.4 52 65.4
Cc05_g08140 Coffea canephora HOM05D002364 ORTHO05D002540 1.1e-06 57.0 52 65.4
Glyma.13G291500 Glycine max HOM05D002364 ORTHO05D002540 1.1e-06 57.0 33 78.8
Peaxi162Scf00469g00131 Petunia axillaris HOM05D002364 ORTHO05D002540 1.1e-06 57.0 52 63.5
TPR.G11609 Trifolium pratense HOM05D002364 ORTHO05D002540 1.1e-06 57.0 52 65.4
Mapoly0061s0032 Marchantia polymorpha HOM05D002364 ORTHO05D002540 1.5e-06 56.6 33 84.8
Phvul.005G096000 Phaseolus vulgaris HOM05D002364 ORTHO05D002540 1.5e-06 56.6 52 65.4
Hund00913 Selenicereus undatus HOM05D002364 ORTHO05D002540 1.5e-06 56.6 34 76.5
Aqoxy1G03176 Aquilegia oxysepala HOM05D002364 ORTHO05D002540 2.0e-06 56.2 56 57.1
AT3G58600 Arabidopsis thaliana HOM05D002364 ORTHO05D002540 2.0e-06 56.2 52 59.6
Eucgr.A01905 Eucalyptus grandis HOM05D002364 ORTHO05D002540 2.0e-06 56.2 52 65.4
CDE03G0166 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 2.6e-06 55.8 52 63.5
CDE04G0524 Ceratophyllum demersum HOM05D002364 ORTHO05D002540 2.6e-06 55.8 52 63.5
Sed0006976 Sechium edule HOM05D002364 ORTHO05D002540 2.6e-06 55.8 42 69.0
Lalb_Chr14g0367411 Lupinus albus HOM05D002364 ORTHO05D002540 3.3e-06 55.5 52 61.5
Nitab4.5_0003827g0060 Nicotiana tabacum HOM05D002364 ORTHO05D002540 3.3e-06 55.5 52 63.5
Medtr2g091185 Medicago truncatula HOM05D002364 ORTHO05D002540 4.4e-06 55.1 52 65.4
Psat5g275280 Pisum sativum HOM05D002364 ORTHO05D002540 4.4e-06 55.1 52 61.5
Sc21g0003870 Simmondsia chinensis HOM05D002364 ORTHO05D002540 4.4e-06 55.1 34 73.5
Lalb_Chr22g0356871 Lupinus albus HOM05D002364 ORTHO05D002540 5.7e-06 54.7 52 61.5
Duzib187G1999 Durio zibethinus HOM05D002364 ORTHO05D002540 7.4e-06 54.3 52 59.6
Os01g0614700 Oryza sativa ssp. japonica HOM05D002364 ORTHO05D002540 7.4e-06 54.3 35 74.3
Gohir.A11G060300 Gossypium hirsutum HOM05D002364 ORTHO05D002540 9.7e-06 53.9 53 60.4
Gohir.D11G064400 Gossypium hirsutum HOM05D002364 ORTHO05D002540 9.7e-06 53.9 53 60.4
Gorai.007G069600 Gossypium raimondii HOM05D002364 ORTHO05D002540 9.7e-06 53.9 53 60.4
Zm00001eb162030 Zea mays HOM05D002364 ORTHO05D002540 9.7e-06 53.9 38 68.4


User provided reference genes

Program Settings