Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.6e-76 289.3 137 100.0
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 6.7e-51 204.1 142 69.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 8.2e-33 144.1 144 50.0
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 1.5e-31 139.8 149 51.7
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 1.0e-30 137.1 144 50.7
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.7e-30 136.3 146 48.6
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 3.8e-30 135.2 147 49.7
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 2.5e-29 132.5 144 48.6
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 3.2e-29 132.1 147 47.6
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 1.2e-28 130.2 147 46.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 1.6e-28 129.8 151 45.7
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 8.0e-28 127.5 142 50.0
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 8.0e-28 127.5 147 51.0
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 3.9e-27 125.2 146 50.0
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 6.7e-27 124.4 146 43.8
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 8.8e-27 124.0 141 47.5
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 2.0e-26 122.9 139 47.5
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 3.3e-26 122.1 146 47.3
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 3.3e-26 122.1 146 47.3
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 3.3e-26 122.1 145 43.4
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 9.7e-26 120.6 140 47.1
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 1.3e-25 120.2 142 43.7
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.7e-25 119.8 108 54.6
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 3.7e-25 118.6 153 44.4
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.4e-24 116.7 158 46.8
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.8e-24 116.3 145 48.3
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 3.1e-24 115.5 144 45.8
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 3.1e-24 115.5 160 41.9
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 3.1e-24 115.5 149 45.0
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 5.3e-24 114.8 136 46.3
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 5.3e-24 114.8 109 49.5
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 5.3e-24 114.8 139 44.6
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 1.2e-23 113.6 145 47.6
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 2.0e-23 112.8 145 46.2
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.6e-23 112.5 153 43.1
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.5e-23 111.7 145 46.9
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.5e-23 111.7 145 46.9
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 5.9e-23 111.3 147 38.8
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.7e-22 109.8 148 43.9
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 2.2e-22 109.4 140 42.1
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 5.5e-21 104.8 143 39.9
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 9.4e-21 104.0 145 42.1
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 2.7e-20 102.4 148 42.6
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.7e-20 102.4 155 42.6
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 4.7e-20 101.7 145 41.4
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 6.1e-20 101.3 156 42.9
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 8.0e-20 100.9 138 40.6
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 1.0e-19 100.5 144 39.6
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 4.0e-19 98.6 156 40.4
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 8.8e-19 97.4 151 38.4
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 7.5e-18 94.4 142 42.3
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 9.7e-18 94.0 159 41.5
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 4.8e-17 91.7 158 41.1
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 4.8e-17 91.7 148 37.8
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 1.1e-16 90.5 143 40.6
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 2.4e-16 89.4 125 42.4
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 4.1e-16 88.6 129 39.5
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 5.3e-16 88.2 153 39.9
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 9.1e-16 87.4 146 37.0
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.2e-15 87.0 117 43.6
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 1.6e-15 86.7 129 38.8
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 1.6e-15 86.7 164 39.6
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 1.6e-15 86.7 113 44.2
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 2.0e-15 86.3 162 34.0
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 3.5e-15 85.5 158 36.7
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 3.5e-15 85.5 159 41.5
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 3.5e-15 85.5 142 39.4
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 3.5e-15 85.5 146 39.0
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 5.9e-15 84.7 139 37.4
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 1.3e-14 83.6 146 38.4
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.3e-14 83.6 75 54.7
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 2.2e-14 82.8 153 38.6
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 8.5e-14 80.9 148 38.5
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 1.1e-13 80.5 155 35.5
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 2.5e-13 79.3 165 38.2
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 4.2e-13 78.6 79 48.1
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 5.5e-13 78.2 162 34.6
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 7.2e-13 77.8 155 35.5
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 1.2e-12 77.0 152 38.2
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.6e-12 76.6 135 36.3
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 2.1e-12 76.3 111 39.6
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 3.6e-12 75.5 150 36.7
ATR0083G010 Amborella trichopoda HOM05D007454 ORTHO05D009382 4.7e-12 75.1 140 35.7
ATR0260G001 Amborella trichopoda HOM05D007454 ORTHO05D009382 4.7e-12 75.1 118 39.8
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 8.0e-12 74.3 119 38.7
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 1.0e-11 73.9 114 39.5
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 4.0e-11 72.0 172 34.9
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 8.8e-11 70.9 155 36.1
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 1.5e-10 70.1 155 33.5
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 2.0e-10 69.7 156 32.1
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 3.4e-10 68.9 155 32.9
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.3e-09 67.0 149 36.2
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.3e-09 67.0 149 36.2
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.3e-09 67.0 149 36.2
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 1.3e-09 67.0 149 36.2
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 2.2e-09 66.2 154 36.4
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 6.3e-09 64.7 128 33.6
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 1.4e-08 63.5 72 47.2
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 1.8e-08 63.2 62 51.6
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.4e-08 62.8 62 56.5
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 9.1e-08 60.8 69 53.6
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.5e-07 58.9 45 55.6
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 7.7e-07 57.8 156 33.3


User provided reference genes

Program Settings