Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.3e-165 585.5 298 100.0
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 3.3e-151 538.5 296 92.6
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 1.3e-131 473.4 290 80.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 1.4e-130 469.9 293 78.5
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 2.1e-126 456.1 293 76.5
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 4.7e-126 454.9 292 78.1
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 6.2e-126 454.5 291 76.3
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 3.1e-125 452.2 291 75.9
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 6.8e-125 451.1 289 77.2
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.5e-124 449.9 289 77.5
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.0e-124 449.5 289 78.5
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 5.8e-124 448.0 293 74.1
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 9.9e-124 447.2 295 75.3
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-123 446.4 293 75.8
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 2.2e-123 446.0 296 74.3
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 8.4e-123 444.1 293 74.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 3.2e-122 442.2 315 71.7
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 2.7e-121 439.1 288 75.0
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 4.6e-121 438.3 293 72.0
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 1.3e-120 436.8 289 72.7
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 2.3e-120 436.0 293 70.6
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 5.1e-120 434.9 297 73.1
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 6.6e-120 434.5 293 71.3
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.1e-119 433.7 289 72.7
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 1.5e-119 433.3 288 74.0
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 1.5e-119 433.3 289 71.3
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.9e-119 433.0 297 71.7
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.5e-119 432.6 289 72.0
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 4.3e-119 431.8 290 72.1
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 9.6e-119 430.6 286 74.1
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 1.2e-118 430.3 295 71.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 1.6e-118 429.9 289 71.3
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 3.6e-118 428.7 293 70.0
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 4.7e-118 428.3 288 71.5
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 1.4e-117 426.8 291 72.5
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 1.8e-117 426.4 291 72.2
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 4.0e-117 425.2 287 73.2
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 5.2e-117 424.9 293 70.0
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 5.2e-117 424.9 293 70.0
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 6.8e-117 424.5 293 69.6
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.8e-117 424.5 291 72.2
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 8.9e-117 424.1 293 70.3
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 2.0e-116 422.9 293 70.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 5.8e-116 421.4 288 72.2
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 1.3e-115 420.2 292 70.5
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.3e-115 420.2 290 71.4
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 6.4e-115 417.9 290 70.3
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 2.4e-114 416.0 290 70.7
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 2.4e-114 416.0 288 71.5
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 5.4e-114 414.8 288 70.8
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 7.1e-114 414.5 316 65.5
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 9.3e-114 414.1 290 69.3
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 1.2e-113 413.7 288 68.1
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 2.1e-113 412.9 289 68.5
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.5e-113 412.1 296 72.3
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 6.0e-113 411.4 286 67.8
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 7.8e-113 411.0 289 70.6
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 7.8e-113 411.0 288 68.8
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.9e-112 408.7 288 68.4
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 8.7e-112 407.5 308 67.5
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.9e-111 406.4 289 66.1
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 4.3e-111 405.2 296 67.6
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 7.3e-111 404.4 288 68.4
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.6e-110 403.3 288 69.1
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 1.1e-109 400.6 288 68.1
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 1.1e-109 400.6 296 67.9
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 3.1e-109 399.1 263 77.2
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-108 396.4 298 65.1
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-108 396.4 298 65.1
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 3.4e-108 395.6 294 66.7
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.7e-107 393.3 296 66.2
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 2.2e-107 392.9 288 66.7
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.9e-107 392.5 291 66.3
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.8e-107 392.1 290 67.6
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 6.4e-107 391.3 292 63.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 1.1e-106 390.6 327 60.9
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 9.3e-106 387.5 303 63.4
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 2.7e-105 386.0 291 66.3
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.7e-105 386.0 293 62.8
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.7e-105 386.0 287 64.1
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 6.0e-105 384.8 294 65.3
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 6.0e-105 384.8 292 62.3
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 5.1e-104 381.7 286 68.2
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.4e-103 377.9 290 63.8
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 2.8e-102 375.9 289 63.0
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 6.2e-102 374.8 291 64.3
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 5.3e-101 371.7 288 63.5
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 1.3e-99 367.1 386 51.8
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-99 366.3 291 60.1
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 2.9e-99 365.9 294 62.2
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 8.4e-99 364.4 239 75.7
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.9e-98 363.2 289 65.1
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 7.1e-98 361.3 232 78.4
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 9.3e-98 360.9 296 58.8
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-97 359.8 296 60.1
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 1.3e-96 357.1 288 62.2
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-96 355.5 295 61.0
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.7e-96 354.4 298 59.4
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 1.5e-95 353.6 291 60.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-95 353.6 290 61.4
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.6e-95 351.7 289 62.3
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 8.1e-94 347.8 295 60.7
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 1.1e-93 347.4 289 61.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 1.4e-93 347.1 296 59.1
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.6e-92 342.8 312 60.3
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 1.0e-91 340.9 291 59.8
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 3.8e-91 339.0 236 69.5
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 2.5e-90 336.3 291 60.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 9.3e-90 334.3 241 72.6
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 2.1e-89 333.2 291 56.7
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.6e-89 332.0 297 56.6
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.0e-88 330.9 296 55.4
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 3.9e-88 328.9 293 56.3
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.4e-85 320.5 291 54.6
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 6.9e-85 318.2 289 60.9
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 4.5e-84 315.5 228 68.0
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 7.6e-84 314.7 288 59.0
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 9.3e-82 307.8 230 65.2
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 8.7e-80 301.2 301 51.2
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 8.7e-80 301.2 244 59.8
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 5.7e-79 298.5 298 50.7
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 6.3e-78 295.0 291 53.3
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 1.7e-75 287.0 295 52.2
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 2.5e-74 283.1 290 52.1
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 9.4e-74 281.2 294 52.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 1.2e-73 280.8 298 52.3
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 5.1e-72 275.4 222 58.6
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 2.8e-70 269.6 303 46.9
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 1.8e-56 223.8 168 64.9
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 8.2e-54 214.9 292 46.2
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 5.9e-52 208.8 189 60.3
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.2e-49 201.1 133 65.4
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.3e-46 188.7 242 45.0
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.1e-45 184.9 124 64.5
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 1.7e-43 180.6 178 56.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 2.6e-39 166.8 292 35.6
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 9.8e-39 164.9 221 45.7
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.9e-35 153.3 177 46.3
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.6e-33 147.5 139 59.0
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.9e-30 136.0 139 51.1
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.3e-22 108.6 92 53.3
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 2.4e-21 107.1 75 66.7
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.5e-18 97.1 52 82.7
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 2.5e-18 97.1 52 82.7
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 3.6e-17 93.2 52 76.9
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 6.2e-17 92.4 52 76.9
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 1.1e-16 91.7 52 76.9
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-16 91.7 53 75.5
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 3.1e-16 90.1 52 75.0
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 4.0e-16 89.7 62 64.5
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 8.3e-14 82.0 72 62.5
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-13 81.6 72 59.7
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.2e-12 78.2 53 67.9
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.1e-11 72.8 70 47.1
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.5e-10 71.2 53 56.6


User provided reference genes

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