Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1428 Trochodendron aralioides HOM05D003199 ORTHO05D003528 2.1e-60 236.1 184 100.0
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 3.1e-27 125.9 125 62.4
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.2e-15 87.4 108 48.1
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 2.1e-15 86.7 162 52.5
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 2.7e-15 86.3 91 52.7
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.9e-15 84.7 86 51.2
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 7.9e-15 84.7 86 51.2
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 7.9e-15 84.7 86 51.2
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 7.9e-15 84.7 104 51.0
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 1.0e-14 84.3 57 68.4
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.4e-14 84.0 58 67.2
CANSAT64G0211 Cannabis sativa HOM05D003199 ORTHO05D003528 1.8e-14 83.6 60 65.0
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 1.8e-14 83.6 110 50.9
unitig_52.g17653 Utricularia gibba HOM05D003199 ORTHO05D003528 1.8e-14 83.6 93 50.5
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 2.3e-14 83.2 57 68.4
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.3e-14 83.2 57 68.4
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 2.3e-14 83.2 57 68.4
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 2.3e-14 83.2 60 66.7
PSO782G3015 Papaver somniferum HOM05D003199 ORTHO05D003528 2.3e-14 83.2 101 48.5
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 2.3e-14 83.2 57 68.4
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 3.0e-14 82.8 72 62.5
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 3.9e-14 82.4 104 47.1
TWI36G0480 Tripterygium wilfordii HOM05D003199 ORTHO05D003528 5.1e-14 82.0 56 69.6
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 6.7e-14 81.6 80 56.2
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 8.8e-14 81.3 58 70.7
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 8.8e-14 81.3 119 47.1
PSO063G5134 Papaver somniferum HOM05D003199 ORTHO05D003528 8.8e-14 81.3 106 49.1
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.1e-13 80.9 97 51.5
Dinv33347 Davidia involucrata HOM05D003199 ORTHO05D003528 2.0e-13 80.1 59 64.4
Thecc.04G034700 Theobroma cacao HOM05D003199 ORTHO05D003528 2.0e-13 80.1 173 63.0
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 2.6e-13 79.7 61 65.6
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 2.6e-13 79.7 82 53.7
Hma1.2p1_1278F.1_g272370 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 2.6e-13 79.7 57 66.7
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 3.3e-13 79.3 55 67.3
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 3.3e-13 79.3 58 65.5
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 3.3e-13 79.3 58 65.5
Peaxi162Scf00420g00566 Petunia axillaris HOM05D003199 ORTHO05D003528 3.3e-13 79.3 93 49.5
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 4.4e-13 79.0 52 73.1
arahy.Tifrunner.gnm1.ann1.VRH5T3 Arachis hypogaea HOM05D003199 ORTHO05D003528 4.4e-13 79.0 52 73.1
CDE12G0833 Ceratophyllum demersum HOM05D003199 ORTHO05D003528 4.4e-13 79.0 123 48.0
Nn4g22460 Nelumbo nucifera HOM05D003199 ORTHO05D003528 4.4e-13 79.0 91 50.5
Oeu011963.1 Olea europaea HOM05D003199 ORTHO05D003528 4.4e-13 79.0 71 57.7
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 4.4e-13 79.0 71 57.7
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 4.4e-13 79.0 115 44.3
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 5.7e-13 78.6 121 46.3
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 5.7e-13 78.6 102 47.1
MSTRG.3260 Avicennia marina HOM05D003199 ORTHO05D003528 7.4e-13 78.2 55 67.3
Manes.17G103700 Manihot esculenta HOM05D003199 ORTHO05D003528 7.4e-13 78.2 97 48.5
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 7.4e-13 78.2 60 66.7
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 7.4e-13 78.2 61 63.9
Cpa.g.sc1017.1 Carica papaya HOM05D003199 ORTHO05D003528 9.7e-13 77.8 104 46.2
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 9.7e-13 77.8 61 62.3
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 9.7e-13 77.8 105 45.7
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 9.7e-13 77.8 101 47.5
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 9.7e-13 77.8 77 55.8
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 1.3e-12 77.4 55 67.3
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-12 77.4 57 64.9
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-12 77.4 57 64.9
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-12 77.4 57 64.9
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 1.3e-12 77.4 55 67.3
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.7e-12 77.0 77 51.9
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.7e-12 77.0 92 48.9
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 1.7e-12 77.0 106 45.3
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 2.2e-12 76.6 95 49.5
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.2e-12 76.6 92 48.9
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 2.2e-12 76.6 59 62.7
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 2.8e-12 76.3 109 47.7
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 2.8e-12 76.3 109 47.7
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 2.8e-12 76.3 70 55.7
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 2.8e-12 76.3 105 45.7
Lsat_1_v5_gn_2_94161 Lactuca sativa HOM05D003199 ORTHO05D003528 2.8e-12 76.3 93 48.4
Phvul.004G054500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 2.8e-12 76.3 69 55.1
PGSC0003DMG400015257 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.8e-12 76.3 112 43.8
TAR374G1096 Trochodendron aralioides HOM05D003199 ORTHO05D003528 2.8e-12 76.3 120 45.0
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 3.7e-12 75.9 91 46.2
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 4.8e-12 75.5 99 47.5
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 6.3e-12 75.1 97 49.5
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 6.3e-12 75.1 59 61.0
Ah.03g147440 Amaranthus hybridus HOM05D003199 ORTHO05D003528 8.2e-12 74.7 110 42.7
Dinv38468 Davidia involucrata HOM05D003199 ORTHO05D003528 8.2e-12 74.7 60 61.7
Duzib205G0007 Durio zibethinus HOM05D003199 ORTHO05D003528 8.2e-12 74.7 118 46.6
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 8.2e-12 74.7 99 45.5
Sopen02g017200 Solanum pennellii HOM05D003199 ORTHO05D003528 8.2e-12 74.7 111 45.9
arahy.Tifrunner.gnm1.ann1.NFT2PX Arachis hypogaea HOM05D003199 ORTHO05D003528 1.1e-11 74.3 94 48.9
COL.COLO4_17189 Corchorus olitorius HOM05D003199 ORTHO05D003528 1.1e-11 74.3 96 45.8
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 1.1e-11 74.3 101 43.6
Solyc02g068090.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.1e-11 74.3 111 45.0
Thecc.03G122900 Theobroma cacao HOM05D003199 ORTHO05D003528 1.1e-11 74.3 124 44.4
Lj1g0002355 Lotus japonicus HOM05D003199 ORTHO05D003528 1.4e-11 73.9 53 71.7
Sopen03g030120 Solanum pennellii HOM05D003199 ORTHO05D003528 1.4e-11 73.9 108 49.1
Nitab4.5_0005418g0050 Nicotiana tabacum HOM05D003199 ORTHO05D003528 1.8e-11 73.6 59 62.7
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.8e-11 73.6 55 61.8
Solyc03g110930.3 Solanum lycopersicum HOM05D003199 ORTHO05D003528 1.8e-11 73.6 116 41.4
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 2.4e-11 73.2 56 62.5
PGSC0003DMG400006976 Solanum tuberosum HOM05D003199 ORTHO05D003528 2.4e-11 73.2 111 44.1
Hma1.2p1_0046F.1_g027530 Hydrangea macrophylla HOM05D003199 ORTHO05D003528 3.1e-11 72.8 106 42.5
arahy.Tifrunner.gnm1.ann1.Z1YI97 Arachis hypogaea HOM05D003199 ORTHO05D003528 4.1e-11 72.4 94 44.7
CiPaw.12G035800 Carya illinoinensis HOM05D003199 ORTHO05D003528 4.1e-11 72.4 88 47.7
Lalb_Chr24g0403341 Lupinus albus HOM05D003199 ORTHO05D003528 4.1e-11 72.4 92 44.6
VMungo0464G0590 Vigna mungo HOM05D003199 ORTHO05D003528 4.1e-11 72.4 52 67.3
Prupe.5G156900 Prunus persica HOM05D003199 ORTHO05D003528 5.3e-11 72.0 56 64.3
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 5.3e-11 72.0 50 70.0
DCAR_026209 Daucus carota HOM05D003199 ORTHO05D003528 7.0e-11 71.6 104 40.4
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 7.0e-11 71.6 104 39.4
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 7.0e-11 71.6 109 44.0
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 7.0e-11 71.6 95 45.3
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 9.1e-11 71.2 107 43.0
Actinidia36194 Actinidia chinensis HOM05D003199 ORTHO05D003528 2.0e-10 70.1 105 42.9
Eucgr.B00147 Eucalyptus grandis HOM05D003199 ORTHO05D003528 2.0e-10 70.1 46 69.6
Eucgr.L01336 Eucalyptus grandis HOM05D003199 ORTHO05D003528 2.0e-10 70.1 46 69.6
Glyma.19G071300 Glycine max HOM05D003199 ORTHO05D003528 2.0e-10 70.1 52 63.5
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.6e-10 69.7 117 41.9
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 3.5e-10 69.3 90 42.2
Gorai.001G061300 Gossypium raimondii HOM05D003199 ORTHO05D003528 3.5e-10 69.3 175 58.9
Gohir.D07G057800 Gossypium hirsutum HOM05D003199 ORTHO05D003528 4.5e-10 68.9 175 58.9
Actinidia05917 Actinidia chinensis HOM05D003199 ORTHO05D003528 5.9e-10 68.6 105 41.0
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 5.9e-10 68.6 52 63.5
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 7.7e-10 68.2 100 41.0
Gohir.A07G053400 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.0e-09 67.8 109 46.8
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.0e-09 67.8 50 66.0
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.3e-09 67.4 100 42.0
VMungo1215G0313 Vigna mungo HOM05D003199 ORTHO05D003528 2.2e-09 66.6 104 39.4
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 2.9e-09 66.2 55 56.4
Glyma.05G044800 Glycine max HOM05D003199 ORTHO05D003528 2.9e-09 66.2 53 58.5
QL10p005054 Quercus lobata HOM05D003199 ORTHO05D003528 2.9e-09 66.2 55 56.4
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 2.9e-09 66.2 100 40.0
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 3.8e-09 65.9 103 37.9
HanXRQChr05g0154721 Helianthus annuus HOM05D003199 ORTHO05D003528 5.0e-09 65.5 58 53.4
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 8.5e-09 64.7 100 41.0
Migut.D01231 Erythranthe guttata HOM05D003199 ORTHO05D003528 8.5e-09 64.7 95 38.9
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 1.1e-08 64.3 100 40.0
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 1.1e-08 64.3 69 52.2
Peaxi162Scf00089g00228 Petunia axillaris HOM05D003199 ORTHO05D003528 1.1e-08 64.3 120 37.5
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 1.9e-08 63.5 89 43.8
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 1.9e-08 63.5 89 43.8
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 2.5e-08 63.2 60 53.3
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 2.5e-08 63.2 60 53.3
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 2.5e-08 63.2 60 53.3
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 3.2e-08 62.8 62 50.0
Lj4g0002784 Lotus japonicus HOM05D003199 ORTHO05D003528 3.2e-08 62.8 50 58.0
Mapoly0090s0063 Marchantia polymorpha HOM05D003199 ORTHO05D003528 3.2e-08 62.8 107 36.4
Pp3c24_1550 Physcomitrium patens HOM05D003199 ORTHO05D003528 4.2e-08 62.4 103 36.9
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 5.5e-08 62.0 110 40.9
Peaxi162Scf00881g00240 Petunia axillaris HOM05D003199 ORTHO05D003528 5.5e-08 62.0 55 58.2
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 7.2e-08 61.6 49 57.1
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 7.2e-08 61.6 89 42.7
ECA246G3163 Erigeron canadensis HOM05D003199 ORTHO05D003528 7.2e-08 61.6 97 40.2
Aa31LG1G18700 Aethionema arabicum HOM05D003199 ORTHO05D003528 9.4e-08 61.2 110 39.1
Mapoly0066s0099 Marchantia polymorpha HOM05D003199 ORTHO05D003528 9.4e-08 61.2 90 42.2
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 1.2e-07 60.8 113 40.7
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 1.6e-07 60.5 54 50.0
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 2.7e-07 59.7 112 41.1
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 2.7e-07 59.7 119 42.0
Pp3c20_22830 Physcomitrium patens HOM05D003199 ORTHO05D003528 2.7e-07 59.7 101 37.6
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 3.6e-07 59.3 110 40.0
Pp3c23_14280 Physcomitrium patens HOM05D003199 ORTHO05D003528 1.0e-06 57.8 124 35.5
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.4e-06 57.4 143 32.2
unitig_52.g17266 Utricularia gibba HOM05D000147 ORTHO05D001254 1.4e-06 57.4 111 36.0
CBR_g8368 Chara braunii HOM05D003199 ORTHO05D003528 1.8e-06 57.0 56 51.8
RcHm_v2.0_Chr7g0191151 Rosa chinensis HOM05D003199 ORTHO05D003528 3.0e-06 56.2 54 55.6
FvH4_5g07520 Fragaria vesca HOM05D003199 ORTHO05D003528 4.0e-06 55.8 47 59.6
FAN04G2235 Fragaria x ananassa HOM05D003199 ORTHO05D003528 4.0e-06 55.8 47 59.6
Duzib187G1506 Durio zibethinus HOM05D003199 ORTHO05D003528 5.2e-06 55.5 64 50.0
Lsat_1_v5_gn_5_13260 Lactuca sativa HOM05D003199 ORTHO05D003528 5.2e-06 55.5 60 40.0
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 5.2e-06 55.5 48 54.2
Sc04g0000960 Simmondsia chinensis HOM05D003199 ORTHO05D003528 5.2e-06 55.5 103 41.7
Pp3c10_22890 Physcomitrium patens HOM05D003199 ORTHO05D003528 6.7e-06 55.1 102 33.3
Potri.012G092700 Populus trichocarpa HOM05D003199 ORTHO05D003528 6.7e-06 55.1 103 35.9
BcaC03g18193 Brassica carinata HOM05D003199 ORTHO05D003528 8.8e-06 54.7 104 37.5
C02p62560 Brassica napus HOM05D003199 ORTHO05D003528 8.8e-06 54.7 104 37.5
BolC2t12315H Brassica oleracea HOM05D003199 ORTHO05D003528 8.8e-06 54.7 104 37.5


User provided reference genes

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