Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.1e-266 921.8 461 100.0
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.7e-213 745.3 464 82.1
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.5e-203 712.2 459 79.3
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.2e-190 668.3 457 72.9
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.2e-189 666.8 460 73.9
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 3.8e-183 645.2 461 71.8
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 1.1e-182 643.7 472 72.9
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 3.6e-181 638.6 457 72.4
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.4e-180 636.7 460 71.1
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 1.8e-180 636.3 464 71.3
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.1e-179 633.6 461 70.5
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 2.0e-179 632.9 460 71.1
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.6e-179 632.5 469 71.0
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.7e-178 629.8 468 69.9
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 9.1e-177 624.0 468 69.0
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.1e-174 617.1 470 69.8
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 5.5e-174 614.8 468 69.2
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 7.2e-174 614.4 470 69.8
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.2e-173 613.6 468 69.4
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 4.7e-173 611.7 467 68.1
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 8.0e-173 610.9 468 69.0
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 8.0e-173 610.9 462 70.3
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.8e-172 609.8 471 67.5
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 2.3e-172 609.4 467 68.3
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.0e-172 608.6 467 67.2
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 5.2e-172 608.2 468 68.8
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 6.8e-172 607.8 461 68.8
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 5.7e-171 604.7 471 68.4
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 2.8e-170 602.4 463 68.3
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 4.8e-170 601.7 459 68.6
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.1e-169 600.5 469 68.4
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 2.4e-169 599.4 471 66.7
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 5.4e-169 598.2 471 66.5
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 7.0e-169 597.8 461 69.0
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 9.1e-169 597.4 468 68.6
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 1.2e-168 597.0 465 66.7
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 3.5e-168 595.5 468 67.5
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 3.5e-168 595.5 470 65.5
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 4.5e-168 595.1 463 67.8
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 7.7e-168 594.3 464 67.0
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.3e-167 593.6 472 68.0
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.3e-167 593.6 466 66.7
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.7e-167 593.2 469 68.0
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 1.7e-167 593.2 465 66.9
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 2.2e-167 592.8 470 66.8
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 3.8e-167 592.0 470 66.6
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 4.2e-166 588.6 471 66.9
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 4.2e-166 588.6 461 66.8
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 7.2e-166 587.8 490 66.7
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 2.1e-165 586.3 464 67.9
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.7e-165 585.9 465 67.1
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 8.0e-165 584.3 465 67.5
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.4e-164 583.6 461 66.2
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.3e-164 582.8 467 67.0
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 4.0e-164 582.0 466 65.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 5.2e-164 581.6 462 66.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.6e-163 579.3 462 66.5
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.3e-162 577.0 469 64.8
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 2.2e-162 576.2 469 65.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 2.8e-162 575.9 473 65.1
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.7e-162 575.5 472 63.3
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 4.9e-162 575.1 462 66.2
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 4.9e-162 575.1 470 64.7
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 6.3e-162 574.7 470 65.1
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.8e-161 573.2 472 64.6
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.4e-161 572.8 467 64.2
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 4.1e-161 572.0 470 64.7
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 5.4e-161 571.6 472 64.2
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 7.7e-160 567.8 481 63.8
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.0e-159 567.4 471 63.7
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 1.0e-159 567.4 462 65.2
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 1.3e-159 567.0 469 63.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.7e-159 566.6 421 69.4
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 5.0e-159 565.1 483 62.9
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 8.6e-159 564.3 466 65.2
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.1e-158 563.9 476 63.9
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.1e-158 563.9 466 65.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.9e-158 563.1 466 65.2
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.5e-158 562.8 465 65.6
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 3.3e-158 562.4 469 63.1
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 5.6e-158 561.6 471 63.3
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 9.5e-158 560.8 464 64.0
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 1.2e-157 560.5 475 64.4
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.7e-157 558.5 481 63.0
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 6.1e-157 558.1 472 65.0
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 3.0e-156 555.8 472 63.1
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 5.2e-156 555.1 465 64.5
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 6.8e-156 554.7 462 63.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.0e-155 553.1 479 63.3
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.6e-155 552.7 457 65.9
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.4e-153 547.0 473 63.6
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.4e-153 545.0 479 63.0
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.7e-152 542.7 461 64.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 3.3e-150 535.8 408 68.1
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 5.6e-150 535.0 471 61.6
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 7.3e-150 534.6 467 61.0
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 1.6e-149 533.5 465 61.1
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 8.0e-149 531.2 464 62.1
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.0e-148 530.8 462 62.1
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.0e-148 530.8 468 62.2
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.8e-148 530.0 464 62.3
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 3.1e-148 529.3 462 62.1
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 4.4e-147 525.4 464 61.4
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 1.1e-142 510.8 486 59.3
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.3e-140 503.1 472 58.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 5.8e-139 498.4 471 58.2
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 2.7e-136 489.6 458 60.5
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.8e-130 469.2 461 55.5
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 6.4e-130 468.4 469 55.9
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.9e-129 466.8 465 56.1
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 9.2e-129 464.5 490 53.7
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 9.3e-121 438.0 482 53.7
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 1.7e-119 433.7 277 77.3
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 2.4e-116 423.3 459 54.5
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 5.4e-113 412.1 460 53.3
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.6e-109 400.6 474 49.2
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.2e-91 341.3 294 63.6
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 3.2e-89 333.2 527 41.7
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.5e-83 314.3 456 45.6
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 2.8e-61 240.4 285 50.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 7.2e-57 225.7 340 43.8
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 5.9e-51 206.1 199 60.3
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 7.3e-41 172.6 287 38.7
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.0e-26 125.6 491 27.7
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 6.6e-26 122.9 463 26.8
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 3.4e-22 110.5 97 61.9
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.7e-21 108.2 81 66.7
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 6.4e-21 106.3 71 77.5
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.3e-17 94.0 175 36.0
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.1e-15 89.0 55 69.1
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 8.9e-15 85.9 55 70.9
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.8e-13 80.5 67 61.2
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.1e-09 68.9 39 89.7
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 1.6e-08 65.1 344 23.3


User provided reference genes

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