Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 0.0e+00 2468.7 1412 100.0
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 0.0e+00 1165.2 749 80.9
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 0.0e+00 1101.3 1411 55.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.5e-259 900.6 1446 48.4
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 6.7e-255 885.2 1489 42.6
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 5.3e-252 875.5 1530 46.3
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 9.7e-246 854.7 1142 46.8
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 4.8e-245 852.4 1493 41.9
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 2.5e-233 813.5 1582 44.3
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 4.2e-225 786.2 1141 44.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 4.4e-222 776.2 1144 44.1
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.0e-220 768.8 1140 43.7
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 9.5e-217 758.4 1134 43.4
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 1.4e-212 744.6 1411 47.8
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 1.5e-209 734.6 1170 41.4
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.4e-207 728.0 903 48.6
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.7e-203 713.8 1126 41.2
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 1.7e-202 711.1 1538 35.9
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.1e-192 677.6 1146 40.3
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.1e-191 675.2 1136 40.4
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 1.2e-190 671.8 1282 38.5
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 9.9e-190 668.7 1142 40.1
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.2e-189 667.5 1502 42.3
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.4e-189 666.0 1141 39.9
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 3.2e-188 663.7 868 46.5
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 1.0e-186 658.7 1141 40.2
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 8.7e-186 655.6 1142 40.4
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 4.0e-183 646.7 1143 40.0
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 4.6e-179 633.3 913 44.6
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.1e-177 628.6 959 43.0
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 3.3e-177 627.1 1142 38.8
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 3.3e-177 627.1 1524 36.0
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.2e-171 608.6 1140 38.3
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 8.7e-170 602.4 1113 38.6
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 2.5e-169 600.9 1530 36.7
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.4e-167 595.1 1598 39.1
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 3.1e-167 594.0 1127 39.0
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.4e-166 590.5 1085 38.2
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 9.3e-164 582.4 1544 32.4
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 1.6e-163 581.6 1546 39.3
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.8e-162 578.2 1538 35.6
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.3e-162 577.8 1543 35.3
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.1e-161 575.5 1593 37.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-160 572.0 1593 38.6
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 9.0e-159 565.8 1138 38.0
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 3.2e-156 557.4 1142 37.6
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 5.5e-148 530.0 1134 33.4
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.5e-145 521.9 1516 34.4
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.5e-142 511.9 1136 33.6
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 1.7e-141 508.4 1137 33.6
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-139 501.9 1128 34.5
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.7e-139 501.1 1444 34.8
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 4.7e-139 500.4 906 38.7
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 1.4e-138 498.8 1441 33.9
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 3.0e-138 497.7 1440 33.4
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.3e-137 494.2 961 38.1
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 7.0e-135 486.5 1124 34.2
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 9.4e-132 476.1 1028 35.5
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 3.6e-131 474.2 1155 34.6
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 5.2e-130 470.3 1462 36.5
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 9.7e-129 466.1 1126 33.8
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 1.7e-128 465.3 1129 33.8
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.2e-128 464.9 1131 33.0
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 8.2e-128 463.0 1123 33.9
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 1.4e-127 462.2 1492 32.4
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.2e-126 459.1 1152 34.1
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 2.9e-125 454.5 1068 34.9
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 5.0e-125 453.8 1122 32.5
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 4.2e-124 450.7 1528 35.5
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 7.2e-124 449.9 1132 32.0
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.1e-111 409.5 1126 30.8
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 7.7e-110 403.3 1530 32.5
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.3e-109 401.7 1132 30.9
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 8.6e-109 399.8 1143 31.6
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.1e-108 399.4 1146 31.8
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 1.9e-108 398.7 1130 31.3
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 4.2e-108 397.5 1132 31.1
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 7.2e-108 396.7 1116 31.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 6.8e-106 390.2 1132 29.8
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 8.9e-106 389.8 1148 30.8
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 8.9e-106 389.8 897 33.9
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 9.8e-105 386.3 1149 32.0
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.2e-104 385.2 1133 30.5
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 3.2e-103 381.3 1006 32.6
TAR633G2434 Trochodendron aralioides HOM05D005129 ORTHO05D005585 7.0e-103 380.2 445 54.2
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 9.2e-103 379.8 1425 28.7
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 1.2e-102 379.4 939 33.2
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 1.0e-101 376.3 1141 30.7
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 8.0e-99 366.7 1142 30.4
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 4.0e-98 364.4 1142 30.5
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.3e-96 359.4 1142 30.3
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 2.2e-96 358.6 1388 29.2
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.7e-94 351.7 1152 29.2
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 2.3e-93 348.6 1141 29.3
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.1e-92 346.3 1114 29.4
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 4.7e-91 340.9 842 32.3
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 2.6e-89 335.1 709 33.3
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 1.9e-87 328.9 1144 28.5
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 7.1e-87 327.0 1131 28.1
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.1e-86 325.5 439 45.3
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 2.1e-86 325.5 439 45.3
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 1.7e-85 322.4 439 45.1
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 2.8e-83 315.1 914 30.4
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 3.9e-77 294.7 1417 25.6
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.1e-74 286.6 829 31.7
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 1.3e-72 279.6 764 29.8
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 3.5e-70 271.6 838 28.8
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 6.6e-69 267.3 240 59.2
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.9e-68 265.8 847 28.8
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.4e-66 259.6 796 30.7
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 1.9e-63 249.2 1173 26.3
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 7.9e-62 243.8 832 28.8
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.6e-61 240.7 1045 38.0
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 5.6e-52 211.1 343 42.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.5e-49 203.0 401 35.7
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.0e-48 200.3 1338 32.1
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.3e-45 189.1 482 30.7
GSVIVG01035592001 Vitis vinifera HOM05D005129 ORTHO05D005585 1.5e-44 186.4 543 36.8
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 7.4e-44 184.1 295 38.0
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 8.2e-43 180.6 490 32.7
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 1.5e-41 176.4 158 58.2
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 2.5e-39 169.1 306 35.0
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 1.3e-35 156.8 931 24.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.7e-32 146.4 345 31.9
Atru.chr3.3028 Acer truncatum HOM05D005129 ORTHO05D005585 2.5e-31 142.5 142 59.2
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 5.5e-31 141.4 333 31.8
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 1.2e-30 140.2 345 31.0
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 7.9e-30 137.5 147 54.4
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 5.3e-26 124.8 171 36.3
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 2.1e-22 112.8 139 46.0
PSO541G6300 Papaver somniferum HOM05D005129 ORTHO05D005585 4.7e-22 111.7 416 47.8
Rhsim13G0123000 Rhododendron simsii HOM05D005129 ORTHO05D005585 3.0e-21 109.0 115 55.7
Gohir.D05G113400 Gossypium hirsutum HOM05D005129 ORTHO05D005585 3.3e-20 105.5 118 50.0
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 7.4e-20 104.4 116 48.3
SHI24814 Sapria himalayana HOM05D005129 ORTHO05D005585 8.2e-19 100.9 567 24.7
PSO675G1291 Papaver somniferum HOM05D005129 ORTHO05D005585 1.7e-16 93.2 124 46.8
PSO675G3866 Papaver somniferum HOM05D026995 ORTHO05D005585 2.9e-16 92.4 157 49.0
Lalb_Chr15g0088861 Lupinus albus HOM05D005129 ORTHO05D005585 5.5e-15 88.2 134 44.0
TPR.G125 Trifolium pratense HOM05D005129 ORTHO05D005585 9.4e-15 87.4 87 52.9
PSO541G4161 Papaver somniferum HOM05D026995 ORTHO05D005585 3.6e-14 85.5 210 34.8
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 1.0e-13 84.0 276 27.2
PSO675G2011 Papaver somniferum HOM05D026995 ORTHO05D005585 1.4e-13 83.6 97 48.5
PSO541G0381 Papaver somniferum HOM05D026995 ORTHO05D005585 1.8e-13 83.2 403 53.6
Aqoxy2G01760 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.3e-11 77.0 87 46.0
Sopen07g020710 Solanum pennellii HOM05D005129 ORTHO05D005585 2.8e-11 75.9 102 43.1
SEGI_31962 Sequoiadendron giganteum HOM05D000002 ORTHO05D000001 1.1e-10 73.9 380 25.3
Aqoxy7G00167 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.4e-10 73.6 99 40.4
Aqoxy7G00171 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.4e-10 73.6 99 40.4
Aqoxy88s005 Aquilegia oxysepala HOM05D029901 ORTHO05D005585 1.4e-10 73.6 99 40.4
Aqoxy7G00172 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 7.0e-10 71.2 118 37.3
Aqoxy88s006 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 7.0e-10 71.2 118 37.3
DCAR_005756 Daucus carota HOM05D005129 ORTHO05D005585 7.7e-09 67.8 68 54.4
Aa31LG10G6530 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.5e-07 63.5 142 33.1
FAN25G0646 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.9e-07 63.2 171 38.6
Carub.0004s1646 Capsella rubella HOM05D005129 ORTHO05D005585 9.4e-07 60.8 140 35.0
Mapoly0049s0034 Marchantia polymorpha HOM05D019256 ORTHO05D005585 2.1e-06 59.7 133 30.1
VMungo1080G1105 Vigna mungo HOM05D000424 ORTHO05D002854 4.7e-06 58.5 87 35.6
SEGI_21549 Sequoiadendron giganteum HOM05D019256 ORTHO05D005585 6.1e-06 58.2 116 35.3


User provided reference genes

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