Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2726.4 1385 100.0
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2386.7 1422 85.2
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2379.4 1388 85.9
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2362.8 1389 85.4
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2352.0 1388 84.7
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2350.5 1388 84.7
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2350.1 1393 84.4
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2348.2 1388 84.4
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2342.0 1389 84.2
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2336.6 1389 84.3
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2336.6 1388 84.5
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2335.8 1387 84.1
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2331.6 1387 84.3
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2329.7 1387 83.8
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2329.3 1390 84.0
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2327.4 1390 83.9
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2319.7 1387 83.1
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2317.7 1387 83.4
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2317.3 1390 83.7
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2317.0 1388 84.1
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2315.8 1387 83.6
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2309.3 1388 83.9
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2300.4 1388 82.8
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2299.6 1387 82.5
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2292.7 1388 83.0
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2290.8 1399 81.8
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2285.8 1388 82.6
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2280.8 1390 81.3
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2271.9 1388 82.3
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2271.1 1390 81.2
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2270.0 1388 82.1
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2266.5 1432 80.3
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2266.1 1390 80.9
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2265.3 1394 80.9
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2264.2 1388 82.4
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2263.4 1389 81.8
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2262.3 1345 84.5
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2261.5 1387 80.5
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2261.1 1389 80.5
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2259.6 1385 81.9
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2258.8 1390 80.6
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2256.9 1390 80.5
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2255.7 1386 82.0
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2254.2 1389 80.4
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2248.4 1394 81.3
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2245.3 1392 80.0
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2243.0 1481 76.7
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2242.2 1387 80.0
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2238.4 1388 80.1
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2235.3 1388 80.3
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2234.9 1386 81.0
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2234.9 1390 81.2
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2229.1 1404 81.1
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2228.8 1391 79.6
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2228.0 1401 78.9
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2223.0 1400 79.5
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2220.7 1387 79.9
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2206.8 1412 78.8
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2200.6 1386 80.0
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2182.5 1398 79.0
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2180.6 1484 74.8
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2172.5 1406 77.6
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2171.0 1402 77.5
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2168.7 1417 76.3
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2166.0 1397 77.4
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2159.8 1402 77.0
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2147.9 1401 76.7
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2146.3 1402 76.5
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1402 76.5
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2142.9 1402 76.5
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2140.2 1402 76.4
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1253 84.8
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2137.5 1413 77.7
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2124.4 1412 75.8
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2120.9 1367 77.3
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2095.9 1695 66.1
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2093.9 1223 84.5
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 2038.5 1350 75.5
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2033.1 1354 75.1
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 2021.1 1346 75.1
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2020.0 1300 78.3
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1989.5 1373 71.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1975.7 1403 71.9
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1947.6 1334 73.9
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1927.1 1190 79.9
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1924.4 1375 72.7
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1922.5 1389 69.5
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1917.1 1376 70.0
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1795.0 1531 62.2
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1530.4 1155 66.7
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1516.9 930 80.6
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1468.0 1392 55.0
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1409.4 977 74.1
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1392.9 1406 51.3
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1389.4 1394 50.8
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1388.6 821 83.8
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1362.1 1346 51.9
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1271.9 881 70.7
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1224.9 715 86.2
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1198.0 815 73.7
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1186.8 761 77.7
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1182.2 791 75.9
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.7e-287 993.4 588 83.5
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 5.5e-286 988.4 832 58.4
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 8.0e-261 904.8 601 76.4
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 3.3e-214 750.0 516 73.8
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.4e-204 718.0 484 76.0
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 1.5e-190 671.4 519 64.7
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 2.6e-187 660.6 1480 29.9
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.7e-162 578.2 534 59.0
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 7.3e-153 546.2 364 73.9
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 5.9e-147 526.6 530 54.5
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 3.0e-122 444.5 541 50.1
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 1.5e-105 389.0 279 69.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 9.0e-95 353.2 221 76.9
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.3e-88 332.8 222 74.8
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 1.4e-84 319.3 421 44.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 7.7e-70 270.4 299 50.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 1.7e-64 252.7 147 83.0
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.0e-54 219.2 139 77.0
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 3.3e-44 185.3 128 65.6
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.4e-41 174.9 133 72.9
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 1.2e-38 166.8 153 53.6
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 1.6e-35 156.4 116 70.7
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.1e-31 143.7 94 77.7
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 2.4e-31 142.5 84 84.5
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 5.4e-31 141.4 88 70.5
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 7.0e-31 141.0 83 79.5
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 1.9e-28 132.9 101 68.3
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 9.5e-28 130.6 112 59.8
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 2.1e-27 129.4 86 77.9
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 3.6e-27 128.6 116 55.2
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 5.2e-26 124.8 153 50.3
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 7.5e-25 120.9 98 55.1
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 9.8e-25 120.6 239 38.1
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 1.0e-21 110.5 173 39.9
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 3.9e-21 108.6 85 68.2
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 3.3e-20 105.5 124 48.4
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.6e-19 103.2 89 53.9
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 6.8e-18 97.8 103 52.4
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.3e-16 93.6 51 88.2
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-15 88.6 50 88.0
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 7.1e-15 87.8 54 81.5
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 4.3e-12 78.6 45 86.7
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 3.6e-11 75.5 42 90.5
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 3.6e-11 75.5 106 42.5
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.6e-09 69.3 56 57.1
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.6e-09 69.3 56 57.1
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 9.9e-09 67.4 44 79.5
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 9.9e-09 67.4 44 79.5
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 9.9e-09 67.4 44 79.5
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 9.9e-09 67.4 44 79.5
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 9.9e-09 67.4 44 79.5
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 1.1e-07 63.9 54 57.4
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 1.4e-07 63.5 43 76.7


User provided reference genes

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