Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 1.9e-245 852.0 432 100.0
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 7.0e-179 630.9 433 77.6
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 5.2e-150 535.0 444 65.3
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.0e-146 521.5 445 66.7
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 7.1e-131 471.5 438 62.1
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 1.2e-125 454.1 440 59.3
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 2.4e-123 446.4 446 58.5
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 1.5e-120 437.2 445 58.0
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 6.9e-118 428.3 426 58.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 3.8e-116 422.5 448 55.6
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 4.9e-116 422.2 412 57.0
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.3e-115 417.9 447 55.3
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 9.3e-115 417.9 448 55.4
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.2e-114 417.5 412 60.0
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 2.7e-114 416.4 448 54.9
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 6.0e-114 415.2 417 58.8
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 6.0e-114 415.2 413 58.8
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.8e-113 413.7 429 57.1
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.0e-113 412.9 430 56.0
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 1.1e-112 411.0 410 56.1
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 1.6e-111 407.1 453 55.4
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 3.7e-111 406.0 427 56.4
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.2e-111 405.2 385 61.0
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 5.3e-110 402.1 335 66.0
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 5.3e-110 402.1 418 56.7
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.8e-109 398.7 413 56.9
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.0e-108 397.9 455 55.4
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 1.4e-107 394.0 440 55.2
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 7.9e-106 388.3 411 55.5
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 9.6e-104 381.3 452 52.9
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 4.8e-103 379.0 417 55.9
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 1.8e-102 377.1 441 51.9
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 7.6e-101 371.7 486 49.6
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 2.2e-100 370.2 435 52.6
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 2.2e-100 370.2 431 54.1
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 2.9e-100 369.8 447 51.5
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.9e-100 369.8 432 51.6
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 5.0e-100 369.0 431 52.0
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 6.5e-100 368.6 433 50.8
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 1.4e-99 367.5 420 53.3
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 1.4e-99 367.5 420 54.0
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 1.9e-99 367.1 424 52.8
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 5.5e-99 365.5 427 52.2
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 7.1e-99 365.2 431 50.6
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 2.1e-98 363.6 353 57.5
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 1.0e-97 361.3 450 51.6
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 1.3e-97 360.9 487 48.5
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 2.3e-97 360.1 412 53.2
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 3.3e-96 356.3 427 51.5
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 1.1e-94 351.3 435 49.0
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 1.2e-93 347.8 415 50.4
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 1.5e-93 347.4 412 50.0
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 3.4e-93 346.3 353 56.9
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.3e-92 344.4 427 49.9
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 5.0e-92 342.4 427 49.6
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 8.5e-92 341.7 409 49.9
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.4e-91 340.9 449 49.4
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.5e-91 340.1 307 60.9
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.6e-90 337.4 335 59.7
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 4.6e-90 335.9 415 48.9
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 3.0e-89 333.2 341 56.9
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 6.7e-89 332.0 457 46.8
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 2.8e-87 326.6 319 57.7
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 5.3e-86 322.4 450 48.0
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 1.7e-84 317.4 440 46.6
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 2.9e-84 316.6 442 50.5
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 2.9e-84 316.6 415 49.2
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 5.0e-84 315.8 381 50.4
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 4.7e-82 309.3 283 61.1
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 8.8e-81 305.1 402 47.0
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 1.1e-80 304.7 288 60.4
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 2.8e-79 300.1 262 63.4
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 2.4e-78 297.0 431 45.5
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 3.1e-78 296.6 422 46.2
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 5.3e-78 295.8 419 45.6
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 1.3e-76 291.2 325 51.4
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 8.5e-76 288.5 332 53.0
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 3.0e-73 280.0 313 51.1
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 5.2e-73 279.3 465 44.1
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 9.7e-72 275.0 376 46.5
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.3e-71 274.6 407 46.2
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 9.1e-70 268.5 417 44.1
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 9.1e-70 268.5 432 42.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 5.5e-67 259.2 422 44.3
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 1.8e-65 254.2 372 46.5
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.8e-65 254.2 326 49.7
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 3.0e-65 253.4 389 45.0
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 2.6e-64 250.4 422 43.4
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.4e-64 250.0 413 40.2
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 7.5e-64 248.8 419 43.0
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 1.3e-63 248.1 384 42.2
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 3.2e-59 233.4 372 43.3
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 7.2e-59 232.3 355 47.0
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 4.0e-57 226.5 365 43.3
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 1.2e-56 224.9 326 42.9
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 4.9e-55 219.5 352 43.5
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 1.6e-53 214.5 303 46.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 8.6e-52 208.8 359 43.5
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 2.3e-49 200.7 390 40.5
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 4.4e-48 196.4 276 49.6
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 5.0e-44 183.0 372 37.6
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 1.8e-41 174.5 403 37.7
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 5.2e-41 172.9 446 33.2
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 7.5e-40 169.1 445 33.7
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 9.8e-40 168.7 445 33.7
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 1.7e-39 167.9 364 36.3
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 2.9e-39 167.2 447 32.7
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 2.9e-39 167.2 441 33.6
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 3.7e-39 166.8 443 32.7
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 3.2e-38 163.7 409 33.7
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 5.4e-38 162.9 387 34.9
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 2.7e-37 160.6 448 32.6
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 7.8e-37 159.1 449 33.0
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 1.3e-36 158.3 196 48.5
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 9.5e-35 152.1 345 36.5
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 2.8e-34 150.6 358 34.4
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 2.8e-34 150.6 267 39.0
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 8.1e-34 149.1 358 34.6
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 1.4e-33 148.3 345 36.2
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 6.8e-33 146.0 278 38.1
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 4.4e-32 143.3 253 38.7
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 1.9e-30 137.9 428 31.8
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 4.6e-29 133.3 307 37.1
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.9e-28 130.2 132 54.5
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.6e-26 124.8 474 31.6
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 4.7e-26 123.2 125 56.8
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 5.2e-25 119.8 446 32.5
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.3e-23 115.2 437 31.8
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 2.4e-22 110.9 148 47.3
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 6.0e-21 106.3 442 30.8
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 1.8e-17 94.7 122 46.7
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 8.9e-17 92.4 195 40.0
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 8.4e-15 85.9 104 51.0
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 7.8e-13 79.3 81 54.3
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 2.3e-12 77.8 174 32.8
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 3.9e-12 77.0 174 32.8
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 7.3e-11 72.8 175 32.6
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 9.0e-09 65.9 84 56.0
SEGI_09816 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 5.8e-08 63.2 149 34.9
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 1.3e-07 62.0 64 51.6
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 1.3e-07 62.0 64 51.6
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 4.9e-07 60.1 102 44.1
Potri.012G044900 Populus trichocarpa HOM05D002346 ORTHO05D002452 4.9e-07 60.1 109 38.5
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 3.2e-06 57.4 60 51.7
Sabra12G0031300 Salix brachista HOM05D002346 ORTHO05D002452 9.3e-06 55.8 115 36.5
TWI74G0314 Tripterygium wilfordii HOM05D002346 ORTHO05D002452 9.3e-06 55.8 218 27.5


User provided reference genes

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