Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.7e-152 542.7 290 100.0
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.1e-74 282.7 217 69.6
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.4e-58 230.7 202 70.3
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.6e-56 221.9 189 66.1
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.6e-54 217.2 194 64.4
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 3.6e-54 216.1 191 63.4
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 2.3e-53 213.4 188 63.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.0e-53 213.0 198 63.1
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 4.0e-53 212.6 191 62.3
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 6.8e-53 211.8 192 60.9
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.2e-52 211.1 188 62.8
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 7.5e-52 208.4 185 61.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 1.3e-51 207.6 188 65.4
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.2e-51 206.8 188 63.8
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 2.2e-51 206.8 188 63.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 2.2e-51 206.8 188 63.3
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 4.9e-51 205.7 188 66.5
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.4e-51 205.3 187 67.9
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.4e-51 205.3 189 66.1
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 9.2e-50 201.4 206 60.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 9.2e-50 201.4 188 62.8
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 9.2e-50 201.4 187 63.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.2e-49 201.1 202 56.9
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.2e-49 201.1 166 69.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.2e-49 201.1 190 66.3
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.6e-49 199.1 208 56.7
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.6e-49 199.1 202 60.9
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 7.8e-49 198.4 202 62.4
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-48 198.0 212 62.3
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.0e-48 198.0 161 69.6
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.3e-48 196.8 190 59.5
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.3e-48 196.8 189 63.5
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 3.0e-48 196.4 188 67.0
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.0e-48 196.4 196 63.8
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 3.9e-48 196.1 188 64.4
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.9e-48 196.1 208 56.2
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.9e-48 196.1 188 67.0
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.0e-48 195.7 195 55.9
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 5.0e-48 195.7 208 58.2
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 8.6e-48 194.9 208 56.7
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.5e-47 194.1 190 57.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.9e-47 193.7 171 62.6
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 7.3e-47 191.8 195 55.4
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 7.3e-47 191.8 200 57.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 7.3e-47 191.8 210 55.2
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.6e-46 190.7 189 58.7
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.6e-46 190.7 198 62.1
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 2.1e-46 190.3 189 59.8
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 2.1e-46 190.3 202 61.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.8e-46 189.9 189 63.5
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.8e-46 189.9 192 62.5
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 2.8e-46 189.9 187 60.4
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.6e-46 189.5 196 55.1
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 4.7e-46 189.1 189 58.2
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 8.0e-46 188.3 217 57.6
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 1.0e-45 188.0 202 58.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.0e-45 188.0 201 56.2
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.0e-45 188.0 207 57.0
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.0e-45 188.0 191 62.3
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.0e-45 188.0 191 62.3
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 1.8e-45 187.2 193 58.0
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.3e-45 186.8 195 55.9
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.1e-45 186.4 189 57.7
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 8.9e-45 184.9 222 54.5
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.6e-44 183.3 188 60.6
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 2.6e-44 183.3 193 61.7
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.4e-44 183.0 202 54.5
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 5.8e-44 182.2 191 59.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 9.8e-44 181.4 234 53.8
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.3e-43 181.0 188 54.3
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 2.2e-43 180.3 188 60.6
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.9e-43 179.9 215 56.7
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 3.7e-43 179.5 206 55.3
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 6.4e-43 178.7 188 58.5
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 8.3e-43 178.3 186 61.8
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 8.3e-43 178.3 188 55.9
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.1e-42 177.9 211 46.4
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 1.9e-42 177.2 260 47.3
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.9e-42 177.2 188 59.6
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.9e-42 177.2 188 59.6
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 2.4e-42 176.8 177 59.3
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 4.1e-42 176.0 201 53.7
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 5.4e-42 175.6 195 59.5
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 7.0e-42 175.3 121 72.7
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 2.7e-41 173.3 212 49.1
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 2.7e-41 173.3 201 54.7
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 6.0e-41 172.2 189 61.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 3.0e-40 169.9 192 56.8
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.0e-40 169.9 212 56.1
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.6e-40 168.7 237 50.6
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 6.6e-40 168.7 193 52.3
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.1e-39 167.9 201 53.7
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.5e-39 167.5 213 52.1
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 1.9e-39 167.2 196 58.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.9e-39 167.2 212 51.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 3.3e-39 166.4 211 50.2
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.3e-39 166.0 212 49.5
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 4.3e-39 166.0 212 49.5
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 5.6e-39 165.6 207 51.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 9.5e-39 164.9 190 55.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.2e-38 164.5 180 57.2
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 1.6e-38 164.1 228 47.4
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.6e-38 164.1 182 56.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 4.7e-38 162.5 216 51.4
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 8.1e-38 161.8 190 52.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 8.1e-38 161.8 196 53.1
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.1e-37 161.4 209 48.8
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 6.8e-37 158.7 216 45.4
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.2e-36 157.9 225 50.2
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.5e-36 157.5 193 52.3
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 2.0e-36 157.1 213 49.3
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.6e-36 156.8 192 47.9
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 7.5e-36 155.2 187 54.5
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 7.5e-36 155.2 190 53.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 9.8e-36 154.8 204 51.5
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.7e-35 154.1 127 59.1
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 4.9e-35 152.5 133 61.7
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.9e-34 150.6 242 45.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 7.1e-34 148.7 180 50.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 9.2e-34 148.3 146 58.2
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.2e-33 147.9 184 53.3
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.3e-31 139.4 301 38.5
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 1.2e-30 137.9 96 64.6
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.6e-30 137.5 188 43.6
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.1e-29 134.8 100 67.0
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 3.2e-26 123.2 291 38.1
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.2e-22 111.3 123 64.2
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.2e-22 111.3 139 51.8
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.1e-22 110.5 188 48.9
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 8.1e-22 108.6 211 38.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.0e-21 106.3 154 42.9
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 1.7e-19 100.9 97 48.5
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 3.8e-19 99.8 125 56.0
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 6.4e-19 99.0 84 59.5
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 7.1e-18 95.5 90 53.3
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.6e-17 94.4 65 70.8
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.3e-16 91.3 133 51.9
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 1.7e-16 90.9 226 32.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 3.0e-16 90.1 68 64.7
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.9e-16 89.7 60 65.0
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 5.1e-16 89.4 211 38.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.1e-14 84.0 59 62.7
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-11 73.2 87 58.6
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-11 73.2 87 58.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 7.1e-10 68.9 59 59.3
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.3e-08 64.7 68 55.9
QL03p011519 Quercus lobata HOM05D004579 ORTHO05D005376 4.3e-07 59.7 88 45.5
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 2.8e-06 57.0 216 30.6


User provided reference genes

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