Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 2888.2 1514 100.0
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 2160.2 1487 76.1
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1995.3 1516 69.4
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1933.3 1521 67.8
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1906.0 1471 67.9
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1884.4 1428 67.9
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1883.6 1497 66.2
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1883.2 1484 67.4
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1873.6 1467 66.5
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1863.2 1492 65.9
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1862.8 1423 67.1
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1859.7 1500 66.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1851.3 1516 65.1
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1849.7 1454 67.0
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1842.8 1437 66.9
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1820.8 1523 65.1
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1819.7 1529 64.8
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1816.6 1419 66.9
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1816.6 1470 65.4
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1815.4 1510 64.1
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1802.7 1468 64.3
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1798.9 1462 65.5
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1782.7 1456 65.0
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1777.7 1456 65.2
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1747.6 1530 61.2
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1728.4 1390 65.7
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1704.9 1364 65.8
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1699.1 1527 59.7
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1695.6 1460 60.8
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1655.2 1455 60.6
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1649.0 1223 69.3
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1645.9 1500 59.3
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1640.6 1467 60.3
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1637.5 1460 59.9
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1627.1 1458 59.7
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1613.6 1460 59.2
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1610.9 1485 58.7
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1604.3 1516 57.8
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1601.3 1450 59.7
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1591.6 1404 59.0
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1576.2 1454 58.9
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1572.4 1462 58.3
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1571.2 1474 58.0
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1570.8 1454 58.7
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1566.2 1488 57.5
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1561.6 1458 58.1
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1559.7 1463 58.0
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1550.0 1463 57.8
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1520.4 1468 57.2
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1514.2 1532 55.7
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1496.5 1324 61.8
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1488.4 1526 54.3
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1482.6 1551 53.5
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1422.9 1336 58.5
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1343.6 1486 52.8
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1238.8 967 66.3
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1208.7 1224 54.9
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1203.3 967 64.7
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 0.0e+00 1161.4 1261 51.3
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 0.0e+00 1131.3 1231 49.6
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1102.0 938 62.6
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 0.0e+00 1097.0 754 75.5
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 0.0e+00 1086.2 1460 42.5
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 1.6e-310 1070.1 1475 43.3
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 4.9e-296 1021.9 1053 52.6
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 8.8e-237 825.1 643 67.7
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.8e-226 790.8 543 76.1
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 5.9e-225 785.8 670 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.0e-221 775.0 1210 38.8
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 4.7e-198 696.4 740 50.4
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 3.5e-193 680.2 539 65.7
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 6.3e-166 589.7 985 37.4
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 5.7e-151 540.0 398 69.8
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 4.5e-140 503.8 722 44.5
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 8.6e-83 313.5 427 45.7
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 2.2e-78 298.9 230 67.8
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 8.4e-70 270.4 322 48.8
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.4e-56 225.7 193 60.1
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 1.0e-54 220.3 240 50.8
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-52 211.1 234 44.0
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 6.9e-48 197.6 145 72.4
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.3e-46 193.4 149 69.1
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.6e-44 186.4 218 45.4
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 1.9e-42 179.5 205 51.2
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 9.7e-42 177.2 143 62.2
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 2.2e-38 166.0 123 66.7
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.6e-28 133.3 195 44.1
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 2.6e-26 125.9 131 56.5
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 2.2e-25 122.9 117 50.4
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 2.4e-24 119.4 117 49.6
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 2.4e-24 119.4 117 49.6
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 4.1e-24 118.6 123 56.9
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 2.9e-22 112.5 303 29.4
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 3.2e-21 109.0 81 66.7
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 2.7e-20 105.9 148 43.9
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 4.1e-16 92.0 70 65.7
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 4.5e-15 88.6 121 47.9
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.7e-14 86.7 51 80.4
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 2.9e-14 85.9 45 86.7
CBR_g54163 Chara braunii HOM05D007170 ORTHO05D009243 2.1e-12 79.7 206 28.2
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 2.1e-12 79.7 260 26.5
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 3.6e-12 79.0 119 37.0
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 5.7e-10 71.6 39 82.1
Zm00001eb019760 Zea mays HOM05D007170 ORTHO05D009243 2.8e-09 69.3 116 34.5
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 8.3e-09 67.8 86 45.3
MBI08_g46642_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D002061 1.6e-07 63.5 51 64.7
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 4.5e-07 62.0 46 58.7
Zm00001eb010750 Zea mays HOM05D007170 ORTHO05D009243 6.6e-06 58.2 103 35.0


User provided reference genes

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