Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.5e-189 666.0 337 100.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 5.5e-139 498.0 368 74.5
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 5.9e-117 424.9 338 67.8
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 1.7e-116 423.3 307 73.0
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.6e-116 421.0 338 66.9
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 1.8e-113 413.3 338 66.6
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 6.8e-113 411.4 311 72.0
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 6.4e-111 404.8 338 66.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 2.7e-109 399.4 338 64.5
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 1.0e-108 397.5 302 70.5
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 3.9e-108 395.6 339 66.7
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 1.4e-105 387.1 342 64.9
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 4.0e-105 385.6 338 63.6
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 4.0e-105 385.6 303 69.3
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 4.0e-105 385.6 338 63.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.8e-104 380.9 345 63.5
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 1.7e-103 380.2 340 63.5
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.9e-103 378.6 261 76.2
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 4.1e-102 375.6 337 62.6
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 2.0e-101 373.2 337 62.9
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 2.7e-101 372.9 224 87.1
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 4.6e-101 372.1 338 63.0
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 6.0e-101 371.7 305 67.2
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 7.8e-101 371.3 278 70.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.0e-100 370.9 264 73.1
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 2.5e-99 366.3 223 84.8
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 7.3e-99 364.8 338 61.5
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 9.5e-99 364.4 224 83.9
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 1.6e-98 363.6 341 61.0
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 1.6e-98 363.6 332 61.7
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 2.1e-98 363.2 339 62.5
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.1e-98 363.2 224 83.5
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 2.8e-98 362.8 297 66.7
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 1.8e-97 360.1 234 79.1
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.3e-97 359.8 230 81.3
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 4.0e-97 359.0 338 60.4
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 4.0e-97 359.0 306 65.4
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 5.2e-97 358.6 291 65.6
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-96 357.1 291 65.3
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 2.0e-96 356.7 296 65.2
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 2.0e-96 356.7 211 87.2
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.4e-96 355.5 224 82.1
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 5.8e-96 355.1 291 64.6
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 5.8e-96 355.1 315 61.3
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 7.5e-96 354.8 230 79.1
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 7.5e-96 354.8 338 59.2
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 9.8e-96 354.4 231 77.5
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 9.8e-96 354.4 240 75.8
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.3e-95 354.0 338 60.1
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.3e-95 354.0 227 77.5
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 3.7e-95 352.4 338 59.2
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 4.9e-95 352.1 230 78.7
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 4.9e-95 352.1 226 81.0
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 4.9e-95 352.1 236 77.1
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.4e-95 351.7 224 80.8
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 6.4e-95 351.7 224 80.8
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.1e-94 350.9 230 79.6
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 3.2e-94 349.4 225 79.6
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 5.4e-94 348.6 251 71.7
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 7.1e-94 348.2 338 60.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 1.2e-93 347.4 221 79.6
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 2.1e-93 346.7 236 75.8
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.7e-93 346.3 237 75.5
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 4.6e-93 345.5 228 77.6
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 6.0e-93 345.1 225 79.6
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 6.0e-93 345.1 263 71.1
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 7.8e-93 344.7 237 75.1
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 1.7e-92 343.6 228 76.8
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 5.1e-92 342.0 224 76.8
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 8.6e-92 341.3 238 74.4
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.6e-92 341.3 247 74.1
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 1.1e-91 340.9 277 65.0
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 1.1e-91 340.9 442 49.5
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 1.5e-91 340.5 225 78.2
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 3.3e-91 339.3 224 78.1
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 4.3e-91 339.0 343 58.6
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 4.3e-91 339.0 236 73.3
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.3e-91 339.0 236 73.7
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 7.3e-91 338.2 225 76.4
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 7.3e-91 338.2 236 73.3
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 9.5e-91 337.8 231 74.5
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.6e-90 337.0 229 76.4
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 1.6e-90 337.0 234 74.8
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 2.1e-90 336.7 236 72.0
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 2.8e-90 336.3 225 75.1
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 3.6e-90 335.9 225 75.1
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 3.6e-90 335.9 225 75.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 4.7e-90 335.5 238 73.1
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 6.2e-90 335.1 231 76.6
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 8.1e-90 334.7 227 75.3
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 8.1e-90 334.7 227 75.3
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 8.1e-90 334.7 234 73.9
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.1e-89 334.3 226 75.7
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.4e-89 334.0 238 72.7
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 1.4e-89 334.0 235 73.2
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.8e-89 333.6 226 76.1
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 1.8e-89 333.6 211 81.5
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 2.3e-89 333.2 305 62.0
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 2.3e-89 333.2 225 76.0
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 2.3e-89 333.2 234 73.5
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.0e-89 332.4 225 76.0
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 5.2e-89 332.0 228 78.5
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 5.2e-89 332.0 238 72.7
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 6.8e-89 331.6 227 77.5
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 2.0e-88 330.1 221 76.5
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 2.0e-88 330.1 222 77.9
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 2.0e-88 330.1 220 78.2
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 3.4e-88 329.3 271 64.9
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 4.4e-88 328.9 225 76.0
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 4.4e-88 328.9 225 76.0
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 9.9e-88 327.8 220 77.7
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 3.5e-85 319.3 225 73.8
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 3.5e-85 319.3 221 75.6
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.0e-84 316.2 239 69.9
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.9e-84 315.8 226 72.1
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 8.6e-84 314.7 214 76.2
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 1.1e-83 314.3 218 74.8
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 7.3e-83 311.6 259 63.7
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 9.6e-83 311.2 227 70.9
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 1.6e-82 310.5 271 62.4
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 1.4e-81 307.4 222 73.0
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 7.6e-80 301.6 225 68.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 2.2e-79 300.1 219 70.3
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.9e-79 299.7 231 69.3
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 6.6e-76 288.5 177 85.3
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 7.3e-75 285.0 177 81.4
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 3.8e-71 272.7 190 75.8
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 2.4e-70 270.0 198 75.8
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 9.3e-70 268.1 169 81.7
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 9.3e-70 268.1 218 66.1
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 8.1e-66 255.0 204 68.6
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 6.9e-65 251.9 166 78.3
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 1.2e-64 251.1 249 56.2
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.3e-63 247.7 190 71.6
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 1.7e-63 247.3 321 48.6
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 2.4e-62 243.4 259 54.8
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.2e-61 241.1 157 80.3
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.2e-61 241.1 173 73.4
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 2.7e-61 240.0 312 47.1
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.5e-59 234.2 264 52.3
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 1.5e-59 234.2 264 52.3
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.2e-56 224.6 186 64.5
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.0e-55 221.5 160 73.8
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 2.3e-52 210.3 180 62.2
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 2.8e-50 203.4 184 57.6
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 3.4e-48 196.4 185 57.3
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 4.6e-45 186.0 153 63.4
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 3.7e-34 149.8 343 34.4
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 1.8e-28 131.0 241 34.9
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 5.3e-25 119.4 68 85.3
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 8.5e-23 112.1 207 35.3
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 8.2e-18 95.5 214 33.2
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.8e-17 94.4 235 30.6
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.3e-15 88.2 254 31.1
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.0e-13 79.0 45 86.7
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 2.6e-11 73.9 56 64.3
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 8.3e-10 68.9 41 80.5
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.1e-09 68.6 180 33.9
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 1.4e-09 68.2 41 73.2
Nitab4.5_0000780g0100 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.4e-09 67.4 162 34.6
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 5.4e-09 66.2 51 66.7
BcaB04g18771 Brassica carinata HOM05D004368 ORTHO05D004990 7.2e-06 55.8 65 41.5


User provided reference genes

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