Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G1036 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.9e-117 424.5 257 100.0
TAR627G0159 Trochodendron aralioides HOM05D003079 ORTHO05D003461 1.7e-60 236.9 251 59.4
TAR611G0001 Trochodendron aralioides HOM05D003079 ORTHO05D003461 5.8e-56 221.9 251 55.8
GSVIVG01014846001 Vitis vinifera HOM05D003079 ORTHO05D003461 3.3e-43 179.5 250 46.4
Nn1g07629 Nelumbo nucifera HOM05D003079 ORTHO05D003461 9.0e-41 171.4 266 43.6
QL08p000493 Quercus lobata HOM05D003079 ORTHO05D003461 1.2e-40 171.0 250 45.2
Thecc.07G001500 Theobroma cacao HOM05D003079 ORTHO05D003461 1.5e-40 170.6 251 43.0
Duzib170G0955 Durio zibethinus HOM05D003079 ORTHO05D003461 3.4e-40 169.5 251 43.8
Duzib213G0264 Durio zibethinus HOM05D003079 ORTHO05D003461 2.9e-39 166.4 249 55.8
Duzib268G0697 Durio zibethinus HOM05D003079 ORTHO05D003461 2.3e-36 156.8 251 41.8
Prupe.6G035500 Prunus persica HOM05D003079 ORTHO05D003461 5.1e-36 155.6 250 50.0
Actinidia30351 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.9e-35 153.7 241 41.5
RcHm_v2.0_Chr5g0074601 Rosa chinensis HOM05D003079 ORTHO05D003461 3.3e-35 152.9 251 40.2
Aqoxy4G02267 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 4.3e-35 152.5 251 42.2
Potri.001G472000 Populus trichocarpa HOM05D003079 ORTHO05D003461 2.1e-34 150.2 251 41.0
Gohir.A13G128400 Gossypium hirsutum HOM05D003079 ORTHO05D003461 8.2e-34 148.3 251 41.0
Manes.05G204700 Manihot esculenta HOM05D003079 ORTHO05D003461 6.9e-33 145.2 252 39.3
Potri.011G169000 Populus trichocarpa HOM05D003079 ORTHO05D003461 6.9e-33 145.2 251 40.6
CSS0018146 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.2e-32 144.4 230 42.2
FAN16G0740 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.2e-32 144.4 251 37.8
Dinv19642 Davidia involucrata HOM05D003079 ORTHO05D003461 1.5e-32 144.1 240 52.9
Gorai.013G147800 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.0e-32 143.7 251 44.2
Gohir.D13G131800 Gossypium hirsutum HOM05D003079 ORTHO05D003461 3.4e-32 142.9 251 43.0
TWI14G0136 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 5.9e-32 142.1 251 38.6
Ciclev10007777m.g Citrus clementina HOM05D003079 ORTHO05D003461 7.6e-32 141.7 251 37.8
FAN25G3298 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.7e-31 140.6 230 39.1
TWI39G1230 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.7e-31 140.6 251 38.2
Dinv40917 Davidia involucrata HOM05D003079 ORTHO05D003461 2.9e-31 139.8 215 56.3
Haze_09917 Corylus avellana HOM05D003079 ORTHO05D003461 3.8e-31 139.4 240 40.8
TWI38G1795 Tripterygium wilfordii HOM05D003079 ORTHO05D003461 1.1e-30 137.9 251 38.2
FAN21G1152 Fragaria x ananassa HOM05D003079 ORTHO05D003461 1.4e-30 137.5 230 39.1
FvH4_3g41590 Fragaria vesca HOM05D003079 ORTHO05D003461 9.3e-30 134.8 251 37.5
CANSAT11G2157 Cannabis sativa HOM05D003079 ORTHO05D003461 1.6e-29 134.0 251 38.2
FAN11G0995 Fragaria x ananassa HOM05D003079 ORTHO05D003461 2.1e-29 133.7 251 37.1
Lj8C183T12 Lonicera japonica HOM05D003079 ORTHO05D003461 6.1e-29 132.1 252 37.3
Medtr3g009740 Medicago truncatula HOM05D003079 ORTHO05D003461 6.1e-29 132.1 251 36.7
PSO063G6668 Papaver somniferum HOM05D003079 ORTHO05D003461 1.3e-28 131.0 252 38.1
Aqoxy7G02327 Aquilegia oxysepala HOM05D003079 ORTHO05D003461 1.8e-28 130.6 251 37.1
Glyma.04G113700 Glycine max HOM05D003079 ORTHO05D003461 1.8e-28 130.6 251 37.5
MD11G1046100 Malus domestica HOM05D003079 ORTHO05D003461 1.8e-28 130.6 250 43.2
Glyma.06G321400 Glycine max HOM05D003079 ORTHO05D003461 2.3e-28 130.2 251 38.2
arahy.Tifrunner.gnm1.ann1.FC0SK2 Arachis hypogaea HOM05D003079 ORTHO05D003461 3.0e-28 129.8 251 37.1
arahy.Tifrunner.gnm1.ann1.WAW8B8 Arachis hypogaea HOM05D003079 ORTHO05D003461 3.0e-28 129.8 251 37.1
Phvul.L001609 Phaseolus vulgaris HOM05D003079 ORTHO05D003461 6.7e-28 128.6 251 38.2
PSO782G1655 Papaver somniferum HOM05D003079 ORTHO05D003461 1.5e-27 127.5 252 37.3
Nitab4.5_0000152g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.5e-27 126.7 251 37.5
Nitab4.5_0009408g0020 Nicotiana tabacum HOM05D003079 ORTHO05D003461 5.7e-27 125.6 251 36.3
Peaxi162Scf00232g00614 Petunia axillaris HOM05D003079 ORTHO05D003461 7.4e-27 125.2 252 36.5
vmacro11641 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 9.7e-27 124.8 252 37.7
Gohir.A11G276200 Gossypium hirsutum HOM05D003079 ORTHO05D003461 2.2e-26 123.6 255 38.0
Hma1.2p1_0193F.1_g084340 Hydrangea macrophylla HOM05D003079 ORTHO05D003461 2.8e-26 123.2 263 36.5
Psat5g231200 Pisum sativum HOM05D003079 ORTHO05D003461 8.2e-26 121.7 251 37.1
Sabra11G0137800 Salix brachista HOM05D003079 ORTHO05D003461 8.2e-26 121.7 251 37.5
Gohir.D11G286600 Gossypium hirsutum HOM05D003079 ORTHO05D003461 1.1e-25 121.3 255 37.6
Nitab4.5_0003570g0050 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.1e-25 121.3 249 32.9
CiPaw.12G142900 Carya illinoinensis HOM05D003079 ORTHO05D003461 1.4e-25 120.9 230 37.4
CSS0035812 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 1.8e-25 120.6 218 38.5
CiPaw.12G142700 Carya illinoinensis HOM05D003079 ORTHO05D003461 2.4e-25 120.2 230 38.7
Gorai.007G310000 Gossypium raimondii HOM05D003079 ORTHO05D003461 2.4e-25 120.2 255 37.3
CSS0022300 Camellia sinensis var. sinensis HOM05D003079 ORTHO05D003461 3.1e-25 119.8 218 38.5
Cc05_g15720 Coffea canephora HOM05D003079 ORTHO05D003461 3.1e-25 119.8 251 34.7
MBI15_g44396_MAGBIO Magnolia biondii HOM05D003079 ORTHO05D003461 4.1e-25 119.4 251 37.1
CiPaw.12G142800 Carya illinoinensis HOM05D003079 ORTHO05D003461 5.3e-25 119.0 230 38.7
CAN.G623.75 Capsicum annuum HOM05D003079 ORTHO05D003461 6.9e-25 118.6 252 34.1
Lj3g0020124 Lotus japonicus HOM05D003079 ORTHO05D003461 1.2e-24 117.9 251 35.9
Lalb_Chr04g0259441 Lupinus albus HOM05D003079 ORTHO05D003461 2.6e-24 116.7 256 36.3
COL.COLO4_07790 Corchorus olitorius HOM05D003079 ORTHO05D003461 5.9e-24 115.5 157 42.0
Solyc07g066170.4 Solanum lycopersicum HOM05D003079 ORTHO05D003461 1.7e-23 114.0 252 32.9
Actinidia31529 Actinidia chinensis HOM05D003079 ORTHO05D003461 1.1e-22 111.3 229 37.6
Nitab4.5_0002216g0030 Nicotiana tabacum HOM05D003079 ORTHO05D003461 2.5e-22 110.2 250 31.6
Eucgr.F03644 Eucalyptus grandis HOM05D003079 ORTHO05D003461 9.4e-22 108.2 251 34.3
VMungo1080G0483 Vigna mungo HOM05D003079 ORTHO05D003461 2.7e-21 106.7 241 35.3
Lalb_Chr18g0048661 Lupinus albus HOM05D003079 ORTHO05D003461 3.6e-21 106.3 202 37.1
Rhsim04G0008000 Rhododendron simsii HOM05D003079 ORTHO05D003461 3.6e-21 106.3 241 47.3
THA.LOC104811703 Tarenaya hassleriana HOM05D003079 ORTHO05D003461 3.6e-21 106.3 254 35.4
Nitab4.5_0000611g0170 Nicotiana tabacum HOM05D003079 ORTHO05D003461 3.9e-20 102.8 251 32.7
TPR.G16690 Trifolium pratense HOM05D003079 ORTHO05D003461 5.1e-20 102.4 250 33.6
PGSC0003DMG400008693 Solanum tuberosum HOM05D003079 ORTHO05D003461 8.8e-20 101.7 251 30.3
Sc03g0011780 Simmondsia chinensis HOM05D003079 ORTHO05D003461 1.1e-19 101.3 251 32.7
CAN.G492.58 Capsicum annuum HOM05D003079 ORTHO05D003461 5.7e-19 99.0 252 29.8
Lj1A901G36 Lonicera japonica HOM05D003079 ORTHO05D003461 5.7e-19 99.0 251 31.5
Sopen07g034350 Solanum pennellii HOM05D003079 ORTHO05D003461 1.3e-18 97.8 136 42.6
MELO3C014061.2 Cucumis melo HOM05D003079 ORTHO05D003461 1.7e-18 97.4 251 33.5
ClCG10G003820 Citrullus lanatus HOM05D003079 ORTHO05D003461 2.8e-18 96.7 251 33.1
Sopen10g001680 Solanum pennellii HOM05D003079 ORTHO05D003461 2.8e-18 96.7 251 29.1
ClCG00G001200 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.8e-18 95.9 251 33.1
ClCG10G003930 Citrullus lanatus HOM05D003079 ORTHO05D003461 4.8e-18 95.9 251 33.1
Cpa.g.sc12.64 Carica papaya HOM05D003079 ORTHO05D003461 1.1e-17 94.7 215 31.2
ATR0751G103 Amborella trichopoda HOM05D003079 ORTHO05D003461 1.4e-17 94.4 132 45.5
Nitab4.5_0001622g0150 Nicotiana tabacum HOM05D003079 ORTHO05D003461 1.4e-17 94.4 194 33.5
AUR62043120 Chenopodium quinoa HOM05D003079 ORTHO05D003461 2.4e-17 93.6 252 32.5
MSTRG.13045 Avicennia marina HOM05D003079 ORTHO05D003461 4.1e-17 92.8 132 43.2
PGR083G0768 Punica granatum HOM05D003079 ORTHO05D003461 4.1e-17 92.8 254 34.3
CsaV3_3G003800 Cucumis sativus L. HOM05D003079 ORTHO05D003461 1.5e-16 90.9 212 34.0
Peaxi162Scf00006g00810 Petunia axillaris HOM05D003079 ORTHO05D003461 5.9e-16 89.0 97 47.4
vmacro09798 Vaccinium macrocarpon HOM05D003079 ORTHO05D003461 5.9e-16 89.0 252 32.1
Sed0005838 Sechium edule HOM05D003079 ORTHO05D003461 1.0e-15 88.2 252 33.3
Sed0022199 Sechium edule HOM05D003079 ORTHO05D003461 1.0e-15 88.2 251 30.7
Medtr8g070940 Medicago truncatula HOM05D003079 ORTHO05D003461 2.2e-15 87.0 252 31.0
MSTRG.16132 Avicennia marina HOM05D003079 ORTHO05D003461 2.9e-15 86.7 130 43.8
SalBow8G1693 Salvia bowleyana HOM05D003079 ORTHO05D003461 2.9e-15 86.7 98 50.0
Oeu052026.1 Olea europaea HOM05D003079 ORTHO05D003461 3.8e-15 86.3 215 33.5
Oeu015272.1 Olea europaea HOM05D003079 ORTHO05D003461 4.2e-14 82.8 135 38.5
Actinidia03676 Actinidia chinensis HOM05D003079 ORTHO05D003461 5.5e-14 82.4 105 44.8
MD03G1043100 Malus domestica HOM05D003079 ORTHO05D003461 1.2e-13 81.3 250 31.6
Lalb_Chr15g0079931 Lupinus albus HOM05D003079 ORTHO05D003461 2.1e-13 80.5 251 28.7
Oeu006261.2 Olea europaea HOM05D003079 ORTHO05D003461 6.1e-13 79.0 127 37.0
Oeu052884.2 Olea europaea HOM05D003079 ORTHO05D003461 6.1e-13 79.0 130 40.8
Atru.chr2.3897 Acer truncatum HOM05D003079 ORTHO05D003461 7.9e-13 78.6 165 33.9
Sp6g18060 Schrenkiella parvula HOM05D003079 ORTHO05D003461 1.4e-12 77.8 253 30.8
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.8e-12 77.4 215 30.7
HPP92_007490 Vanilla planifolia HOM05D003079 ORTHO05D003461 3.0e-12 76.6 194 32.0
SGA_v2.0_scaffold7G03549 Striga asiatica HOM05D003079 ORTHO05D003461 3.9e-12 76.3 111 43.2
SGA_v2.0_scaffold186G40233 Striga asiatica HOM05D003079 ORTHO05D003461 5.2e-12 75.9 113 41.6
DCAR_017612 Daucus carota HOM05D003079 ORTHO05D003461 2.0e-11 73.9 277 36.1
Thhalv10013313m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 2.0e-11 73.9 248 28.2
DCAR_013756 Daucus carota HOM05D003079 ORTHO05D003461 3.3e-11 73.2 249 29.3
HanXRQChr05g0160341 Helianthus annuus HOM05D003079 ORTHO05D003461 2.2e-10 70.5 112 42.0
HPP92_022810 Vanilla planifolia HOM05D003079 ORTHO05D003461 2.2e-10 70.5 217 29.0
Carub.0008s1653 Capsella rubella HOM05D003079 ORTHO05D003461 3.7e-10 69.7 249 29.3
Aa31LG3G12120 Aethionema arabicum HOM05D003079 ORTHO05D003461 4.8e-10 69.3 259 30.9
Rhsim06G0235200 Rhododendron simsii HOM05D003079 ORTHO05D003461 4.8e-10 69.3 251 35.9
MSTRG.14525 Avicennia marina HOM05D003079 ORTHO05D003461 6.3e-10 68.9 112 41.1
Carub.0007s1447 Capsella rubella HOM05D003079 ORTHO05D003461 1.1e-09 68.2 266 30.1
PGSC0003DMG400022146 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.4e-09 67.8 251 25.9
PGSC0003DMG400028881 Solanum tuberosum HOM05D003079 ORTHO05D003461 1.8e-09 67.4 80 43.8
AT5G56210 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.1e-09 66.2 249 32.1
Sp7g24370 Schrenkiella parvula HOM05D003079 ORTHO05D003461 4.1e-09 66.2 249 30.1
Thhalv10024990m.g Eutrema salsugineum HOM05D003079 ORTHO05D003461 9.1e-09 65.1 254 29.5
Oeu005543.1 Olea europaea HOM05D003079 ORTHO05D003461 9.1e-09 65.1 130 36.9
AL8G31840 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 1.2e-08 64.7 250 30.8
SEGI_20118 Sequoiadendron giganteum HOM05D003079 ORTHO05D003461 1.2e-08 64.7 135 34.1
SGA_v2.0_scaffold92G28159 Striga asiatica HOM05D003079 ORTHO05D003461 2.6e-08 63.5 130 39.2
AT4G26455 Arabidopsis thaliana HOM05D003079 ORTHO05D003461 4.5e-08 62.8 249 29.3
Psat4g111200 Pisum sativum HOM05D003079 ORTHO05D003461 4.5e-08 62.8 187 28.9
EL10Ac4g08434 Beta vulgaris HOM05D003079 ORTHO05D003461 7.7e-08 62.0 258 28.7
CARHR269610 Cardamine hirsuta HOM05D003079 ORTHO05D003461 1.3e-07 61.2 251 27.9
Ca_19985_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 2.9e-07 60.1 92 44.6
CARHR234020 Cardamine hirsuta HOM05D003079 ORTHO05D003461 3.8e-07 59.7 136 40.4
TPR.G28965 Trifolium pratense HOM05D003079 ORTHO05D003461 8.5e-07 58.5 195 27.7
Ca_00014_v3 Cicer arietinum L. HOM05D003079 ORTHO05D003461 1.1e-06 58.2 100 40.0
Os09g0481300 Oryza sativa ssp. japonica HOM05D003079 ORTHO05D003461 1.5e-06 57.8 130 30.0
AL7G26490 Arabidopsis lyrata HOM05D003079 ORTHO05D003461 2.5e-06 57.0 134 38.1
Hund22967 Selenicereus undatus HOM05D003079 ORTHO05D003461 3.2e-06 56.6 112 37.5
Zm00001eb101670 Zea mays HOM05D003079 ORTHO05D003461 4.2e-06 56.2 186 25.3
A01p17700 Brassica napus HOM05D003079 ORTHO05D003461 7.2e-06 55.5 127 37.0
Migut.M01581 Erythranthe guttata HOM05D003079 ORTHO05D003461 7.2e-06 55.5 116 31.9
BraA01t01726Z Brassica rapa HOM05D003079 ORTHO05D003461 9.4e-06 55.1 127 37.0


User provided reference genes

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