Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 8.1e-187 657.9 654 100.0
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 4.9e-99 366.3 430 73.7
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 2.3e-93 347.4 403 70.2
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 7.5e-92 342.4 433 69.1
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.9e-90 337.8 431 68.4
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 1.6e-89 334.7 394 72.1
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 2.0e-89 334.3 433 67.9
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 3.5e-89 333.6 395 72.7
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 1.2e-86 325.1 431 65.9
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.1e-86 324.3 401 69.8
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 2.3e-85 320.9 431 65.7
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.1e-85 320.5 431 51.7
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 1.2e-84 318.5 395 70.9
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 2.2e-83 314.3 401 58.6
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 1.4e-82 311.6 402 69.2
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.2e-81 308.5 393 70.5
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.7e-81 307.4 393 70.2
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 2.3e-80 304.3 389 69.9
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 3.9e-80 303.5 387 58.9
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 1.2e-78 298.5 423 66.0
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 4.7e-78 296.6 390 70.5
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 2.2e-75 287.7 424 64.9
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 8.3e-75 285.8 437 62.2
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 5.4e-74 283.1 397 67.3
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.2e-73 282.0 392 67.6
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 7.8e-73 279.3 415 65.1
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 4.7e-70 270.0 431 60.1
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 4.7e-70 270.0 386 65.0
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 6.2e-70 269.6 415 54.5
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 6.8e-69 266.2 414 63.5
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 4.4e-68 263.5 390 66.9
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 5.8e-68 263.1 390 66.9
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 2.2e-67 261.2 399 62.9
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 1.1e-66 258.8 434 63.8
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 5.1e-64 250.0 344 72.1
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 8.7e-64 249.2 387 60.7
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 1.1e-63 248.8 397 63.2
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 5.6e-63 246.5 378 59.8
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 3.6e-62 243.8 409 62.6
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 8.1e-62 242.7 394 63.7
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 3.1e-61 240.7 396 59.6
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 5.8e-60 236.5 387 66.4
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 3.8e-59 233.8 431 60.6
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 3.2e-58 230.7 385 61.3
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 1.2e-57 228.8 410 61.2
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 2.1e-57 228.0 390 63.6
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.7e-56 224.9 410 61.0
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 9.6e-55 219.2 423 58.6
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.8e-54 217.6 304 76.0
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 3.6e-54 217.2 304 75.7
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 3.6e-54 217.2 210 53.3
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 4.0e-53 213.8 165 60.6
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 1.2e-52 212.2 346 65.9
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 7.6e-52 209.5 166 57.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.4e-50 204.5 107 92.5
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.8e-46 190.3 144 66.0
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 6.2e-46 189.9 433 53.1
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 4.0e-45 187.2 397 48.9
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 1.5e-44 185.3 349 59.3
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 2.9e-43 181.0 165 50.9
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 3.2e-42 177.6 391 56.3
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.9e-39 168.3 396 48.0
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 5.6e-39 166.8 385 47.0
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 3.7e-38 164.1 396 50.8
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 5.3e-37 160.2 305 38.4
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 2.0e-36 158.3 165 40.6
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 2.2e-35 154.8 401 48.9
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 4.9e-35 153.7 197 37.6
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.5e-34 150.2 110 62.7
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 9.3e-34 149.4 408 37.7
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 1.1e-31 142.5 198 36.4
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 2.8e-30 137.9 208 33.7
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 4.1e-29 134.0 374 40.6
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 1.5e-28 132.1 168 37.5
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 1.3e-27 129.0 367 49.3
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 2.2e-27 128.3 387 39.3
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.8e-24 118.6 87 63.2
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 5.1e-24 117.1 407 23.8
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 8.8e-24 116.3 387 52.7
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 1.1e-23 115.9 390 23.6
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 3.3e-23 114.4 391 23.3
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 7.4e-23 113.2 165 33.3
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 3.7e-22 110.9 304 63.2
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 9.1e-21 106.3 391 25.1
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 9.1e-21 106.3 391 25.1
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.4e-18 99.0 293 58.0
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 3.2e-18 97.8 76 61.8
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 1.2e-17 95.9 391 37.3
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 1.0e-16 92.8 391 38.6
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 4.4e-15 87.4 66 59.1
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.6e-12 78.2 304 24.0
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 2.9e-11 74.7 90 36.7
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 8.5e-11 73.2 140 29.3
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 4.2e-10 70.9 185 25.4
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 7.2e-10 70.1 149 26.8
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 7.2e-10 70.1 174 27.6
AT3G49730 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 2.1e-09 68.6 175 26.3
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 2.1e-09 68.6 174 27.0
Solyc01g007267.1 Solanum lycopersicum HOM05D000424 ORTHO05D000355 2.1e-09 68.6 134 29.9
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 3.6e-09 67.8 189 24.3
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 3.6e-09 67.8 169 27.2
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 3.6e-09 67.8 188 27.1
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 4.7e-09 67.4 185 25.4
AL5G29690 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 6.1e-09 67.0 169 26.6
EL10Ac4g10108 Beta vulgaris HOM05D006596 ORTHO05D008497 6.1e-09 67.0 138 29.0
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 6.1e-09 67.0 184 26.1
CARHR158820 Cardamine hirsuta HOM05D000424 ORTHO05D000355 1.0e-08 66.2 159 27.0
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.4e-08 65.9 138 28.3
Manes.09G043000 Manihot esculenta HOM05D006596 ORTHO05D008497 1.8e-08 65.5 161 27.3
HPP92_016385 Vanilla planifolia HOM05D007173 ORTHO05D009151 1.8e-08 65.5 191 27.7
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 2.3e-08 65.1 110 30.0
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 3.0e-08 64.7 110 30.0
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.9e-08 64.3 201 24.9
Sopen01g003270 Solanum pennellii HOM05D000424 ORTHO05D000355 3.9e-08 64.3 134 29.1
PGSC0003DMG400034554 Solanum tuberosum HOM05D000424 ORTHO05D000355 3.9e-08 64.3 134 29.1
MSTRG.26768 Avicennia marina HOM05D007128 ORTHO05D009059 6.7e-08 63.5 161 25.5
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 6.7e-08 63.5 143 28.7
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 6.7e-08 63.5 161 26.7
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 8.8e-08 63.2 181 28.7
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 1.1e-07 62.8 185 24.3
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 1.1e-07 62.8 159 25.8
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 1.1e-07 62.8 188 23.9
THA.LOC104827758 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 1.1e-07 62.8 200 24.0
Psat6g128160 Pisum sativum HOM05D006596 ORTHO05D008497 1.5e-07 62.4 140 30.0
Sed0007804 Sechium edule HOM05D006596 ORTHO05D008497 2.0e-07 62.0 188 26.1
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 2.6e-07 61.6 159 25.8
Nitab4.5_0010740g0020 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.6e-07 61.6 138 26.8
TPR.G40248 Trifolium pratense HOM05D006596 ORTHO05D008497 2.6e-07 61.6 155 28.4
CiPaw.07G037000 Carya illinoinensis HOM05D000424 ORTHO05D000355 3.3e-07 61.2 164 23.8
AUR62007548 Chenopodium quinoa HOM05D000424 ORTHO05D000355 4.4e-07 60.8 187 24.1
Phvul.007G266200 Phaseolus vulgaris HOM05D006596 ORTHO05D008497 4.4e-07 60.8 140 27.9
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 4.4e-07 60.8 163 23.9
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 5.7e-07 60.5 185 24.3
ATR0697G239 Amborella trichopoda HOM05D006596 ORTHO05D008497 5.7e-07 60.5 171 26.3
Migut.O00313 Erythranthe guttata HOM05D006596 ORTHO05D008497 5.7e-07 60.5 168 28.0
Lj1P1058T24 Lonicera japonica HOM05D006596 ORTHO05D008497 5.7e-07 60.5 167 25.7
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 7.4e-07 60.1 149 25.5
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 7.4e-07 60.1 133 25.6
SalBow5G1594 Salvia bowleyana HOM05D000424 ORTHO05D000355 7.4e-07 60.1 159 24.5
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 9.7e-07 59.7 187 24.1
VMungo0720G1474 Vigna mungo HOM05D006596 ORTHO05D008497 9.7e-07 59.7 140 27.9
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 1.3e-06 59.3 159 25.2
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 1.3e-06 59.3 105 26.7
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 1.7e-06 58.9 159 25.2
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 1.7e-06 58.9 172 25.0
Lj4P166T39 Lonicera japonica HOM05D000424 ORTHO05D000355 1.7e-06 58.9 133 24.8
TPR.G8466 Trifolium pratense HOM05D000424 ORTHO05D000355 1.7e-06 58.9 185 23.2
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 2.2e-06 58.5 150 26.7
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 2.2e-06 58.5 200 23.0
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 2.2e-06 58.5 200 23.0
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 2.2e-06 58.5 191 23.6
Nitab4.5_0000020g0300 Nicotiana tabacum HOM05D000424 ORTHO05D000355 2.2e-06 58.5 185 23.8
Oeu063088.1 Olea europaea HOM05D006596 ORTHO05D008497 2.2e-06 58.5 161 27.3
BraA10t45038Z Brassica rapa HOM05D006596 ORTHO05D008497 2.8e-06 58.2 131 29.0
CAN.G574.31 Capsicum annuum HOM05D000424 ORTHO05D000355 2.8e-06 58.2 167 24.6
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 2.8e-06 58.2 164 24.4
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 2.8e-06 58.2 159 23.9
Oeu024268.1 Olea europaea HOM05D000104 ORTHO05D009920 2.8e-06 58.2 149 29.5
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 3.7e-06 57.8 181 28.2
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 3.7e-06 57.8 181 28.2
Aqoxy6G02961 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 3.7e-06 57.8 185 23.2
Ciclev10010964m.g Citrus clementina HOM05D006596 ORTHO05D008497 4.8e-06 57.4 131 23.7
Ah.03g140170 Amaranthus hybridus HOM05D000424 ORTHO05D000355 6.3e-06 57.0 165 24.2
CANSAT80G1535 Cannabis sativa HOM05D000424 ORTHO05D000355 6.3e-06 57.0 160 25.6
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 6.3e-06 57.0 174 28.2
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 6.3e-06 57.0 174 28.2
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 6.3e-06 57.0 138 25.4
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 6.3e-06 57.0 138 25.4
THA.LOC104808568 Tarenaya hassleriana HOM05D005622 ORTHO05D002854 6.3e-06 57.0 107 29.0
Thecc.05G108600 Theobroma cacao HOM05D006596 ORTHO05D008497 6.3e-06 57.0 144 27.8
MSTRG.10608 Avicennia marina HOM05D000424 ORTHO05D000355 8.2e-06 56.6 160 26.2
Glyma.15G019900 Glycine max HOM05D000424 ORTHO05D000355 8.2e-06 56.6 167 23.4
PSO541G2131 Papaver somniferum HOM05D000424 ORTHO05D000355 8.2e-06 56.6 164 25.0
VMungo1080G1240 Vigna mungo HOM05D000424 ORTHO05D000355 8.2e-06 56.6 168 22.6


User provided reference genes

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