Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0894 Trochodendron aralioides HOM05D005454 ORTHO05D006781 4.8e-67 257.7 129 100.0
Prupe.4G126700 Prunus persica HOM05D005454 ORTHO05D006781 1.8e-58 229.2 127 86.6
Actinidia00854 Actinidia chinensis HOM05D005454 ORTHO05D006781 1.5e-57 226.1 127 83.5
Nn7g38402 Nelumbo nucifera HOM05D005454 ORTHO05D006781 1.5e-57 226.1 127 85.0
Manes.16G045300 Manihot esculenta HOM05D005454 ORTHO05D006781 4.5e-57 224.6 127 85.8
ClCG02G018790 Citrullus lanatus HOM05D005454 ORTHO05D006781 7.7e-57 223.8 127 86.6
COL.COLO4_19518 Corchorus olitorius HOM05D005454 ORTHO05D006781 7.7e-57 223.8 127 83.5
MD10G1217600 Malus domestica HOM05D005454 ORTHO05D006781 7.7e-57 223.8 127 84.3
Eucgr.F04477 Eucalyptus grandis HOM05D005454 ORTHO05D006781 2.2e-56 222.2 131 84.7
vmacro09764 Vaccinium macrocarpon HOM05D005454 ORTHO05D006781 2.2e-56 222.2 129 81.4
Thecc.02G245200 Theobroma cacao HOM05D005454 ORTHO05D006781 2.9e-56 221.9 128 84.4
Duzib251G0225 Durio zibethinus HOM05D005454 ORTHO05D006781 1.1e-55 219.9 128 83.6
Oeu029453.1 Olea europaea HOM05D005454 ORTHO05D006781 1.9e-55 219.2 127 82.7
GSVIVG01036708001 Vitis vinifera HOM05D005454 ORTHO05D006781 3.2e-55 218.4 129 83.7
Atru.chr1.44 Acer truncatum HOM05D005454 ORTHO05D006781 1.2e-54 216.5 127 82.7
Potri.008G081400 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.6e-54 216.1 126 81.7
CiPaw.15G112200 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.1e-54 215.7 127 79.5
TWI59G0830 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 2.1e-54 215.7 127 81.9
Duzib248G0167 Durio zibethinus HOM05D005454 ORTHO05D006781 4.7e-54 214.5 128 82.0
Gohir.A02G014000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 4.7e-54 214.5 128 80.5
Rhsim04G0003500 Rhododendron simsii HOM05D005454 ORTHO05D006781 7.9e-54 213.8 145 72.4
Gohir.D01G133900 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.0e-53 213.4 127 80.3
Peaxi162Scf00286g00452 Petunia axillaris HOM05D005454 ORTHO05D006781 1.0e-53 213.4 127 81.1
Ciclev10006210m.g Citrus clementina HOM05D005454 ORTHO05D006781 1.4e-53 213.0 129 79.1
Gorai.002G165600 Gossypium raimondii HOM05D005454 ORTHO05D006781 1.4e-53 213.0 128 79.7
Sabra08G0060600 Salix brachista HOM05D005454 ORTHO05D006781 1.4e-53 213.0 127 80.3
Solyc09g098140.4 Solanum lycopersicum HOM05D005454 ORTHO05D006781 1.8e-53 212.6 127 81.1
Sopen09g036090 Solanum pennellii HOM05D005454 ORTHO05D006781 1.8e-53 212.6 127 81.1
PGR102G3369 Punica granatum HOM05D005454 ORTHO05D006781 3.0e-53 211.8 118 84.7
CsaV3_6G013400 Cucumis sativus L. HOM05D005454 ORTHO05D006781 3.9e-53 211.5 127 81.1
Cc00_g09040 Coffea canephora HOM05D005454 ORTHO05D006781 5.2e-53 211.1 127 78.7
Nitab4.5_0006630g0030 Nicotiana tabacum HOM05D005454 ORTHO05D006781 5.2e-53 211.1 127 80.3
CAN.G710.29 Capsicum annuum HOM05D005454 ORTHO05D006781 6.7e-53 210.7 127 79.5
Migut.M01498 Erythranthe guttata HOM05D005454 ORTHO05D006781 1.1e-52 209.9 127 81.1
PGSC0003DMG400011901 Solanum tuberosum HOM05D005454 ORTHO05D006781 1.1e-52 209.9 127 79.5
QL04p094645 Quercus lobata HOM05D005454 ORTHO05D006781 2.0e-52 209.1 127 78.0
QL04p094846 Quercus lobata HOM05D005454 ORTHO05D006781 2.0e-52 209.1 127 78.0
TWI38G1327 Tripterygium wilfordii HOM05D005454 ORTHO05D006781 3.3e-52 208.4 127 78.7
Aqoxy1G01376 Aquilegia oxysepala HOM05D005454 ORTHO05D006781 4.4e-52 208.0 126 80.2
CANSAT56G0738 Cannabis sativa HOM05D005454 ORTHO05D006781 4.4e-52 208.0 116 83.6
CANSAT56G1199 Cannabis sativa HOM05D005454 ORTHO05D006781 4.4e-52 208.0 116 83.6
Nitab4.5_0004200g0060 Nicotiana tabacum HOM05D005454 ORTHO05D006781 4.4e-52 208.0 127 79.5
Cpa.g.sc32.137 Carica papaya HOM05D005454 ORTHO05D006781 2.2e-51 205.7 121 81.0
Sed0024280 Sechium edule HOM05D005454 ORTHO05D006781 2.2e-51 205.7 129 79.1
CiPaw.15G112600 Carya illinoinensis HOM05D005454 ORTHO05D006781 2.8e-51 205.3 149 69.1
Glyma.11G026500 Glycine max HOM05D005454 ORTHO05D006781 1.4e-50 203.0 118 80.5
Hund10936 Selenicereus undatus HOM05D005454 ORTHO05D006781 2.4e-50 202.2 125 78.4
SGA_v2.0_scaffold186G40175 Striga asiatica HOM05D005454 ORTHO05D006781 2.4e-50 202.2 124 78.2
Dinv42456 Davidia involucrata HOM05D005454 ORTHO05D006781 3.1e-50 201.8 117 82.9
HanXRQChr13g0408901 Helianthus annuus HOM05D005454 ORTHO05D006781 4.1e-50 201.4 125 77.6
HanXRQChr13g0408931 Helianthus annuus HOM05D005454 ORTHO05D006781 4.1e-50 201.4 125 77.6
Lsat_1_v5_gn_5_184081 Lactuca sativa HOM05D005454 ORTHO05D006781 4.1e-50 201.4 120 80.0
Phvul.002G154100 Phaseolus vulgaris HOM05D005454 ORTHO05D006781 5.3e-50 201.1 119 78.2
SalBow8G4406 Salvia bowleyana HOM05D005454 ORTHO05D006781 5.3e-50 201.1 127 76.4
VMungo1215G2509 Vigna mungo HOM05D005454 ORTHO05D006781 5.3e-50 201.1 119 79.8
RcHm_v2.0_Chr5g0023201 Rosa chinensis HOM05D005454 ORTHO05D006781 7.0e-50 200.7 127 78.7
Os02g0495900 Oryza sativa ssp. japonica HOM05D005454 ORTHO05D006781 9.1e-50 200.3 128 76.6
FvH4_3g13970 Fragaria vesca HOM05D005454 ORTHO05D006781 1.2e-49 199.9 127 78.0
FAN11G3450 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.2e-49 199.9 127 78.0
SalBow8G5040 Salvia bowleyana HOM05D005454 ORTHO05D006781 1.2e-49 199.9 125 76.8
FAN16G0850 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.6e-49 199.5 127 78.0
FAN21G1174 Fragaria x ananassa HOM05D005454 ORTHO05D006781 1.6e-49 199.5 127 78.0
MD05G1239400 Malus domestica HOM05D005454 ORTHO05D006781 2.0e-49 199.1 117 81.2
unitig_32.g11075 Utricularia gibba HOM05D005454 ORTHO05D006781 3.5e-49 198.4 114 82.5
Glyma.01G216400 Glycine max HOM05D005454 ORTHO05D006781 4.5e-49 198.0 119 78.2
ATR0820G041 Amborella trichopoda HOM05D005454 ORTHO05D006781 7.7e-49 197.2 119 78.2
Lj3g0001328 Lotus japonicus HOM05D005454 ORTHO05D006781 1.0e-48 196.8 119 79.8
Ah.02g115510 Amaranthus hybridus HOM05D005454 ORTHO05D006781 1.7e-48 196.1 125 75.2
Zm00001eb241290 Zea mays HOM05D005454 ORTHO05D006781 2.2e-48 195.7 125 76.0
A07p27170 Brassica napus HOM05D005454 ORTHO05D006781 3.8e-48 194.9 126 73.8
MBI13_g09219_MAGBIO Magnolia biondii HOM05D005454 ORTHO05D006781 3.8e-48 194.9 123 80.5
BcaC08g45360 Brassica carinata HOM05D005454 ORTHO05D006781 5.0e-48 194.5 126 73.8
C06p29920 Brassica napus HOM05D005454 ORTHO05D006781 5.0e-48 194.5 126 73.8
BraA07t30361Z Brassica rapa HOM05D005454 ORTHO05D006781 5.0e-48 194.5 126 73.8
Sabra10G0134500 Salix brachista HOM05D005454 ORTHO05D006781 5.0e-48 194.5 127 75.6
BcaB02g07212 Brassica carinata HOM05D005454 ORTHO05D006781 6.5e-48 194.1 126 73.8
CiPaw.15G112400 Carya illinoinensis HOM05D005454 ORTHO05D006781 6.5e-48 194.1 141 68.8
Aa31LG4G1640 Aethionema arabicum HOM05D005454 ORTHO05D006781 8.5e-48 193.7 126 70.6
EL10Ac5g12502 Beta vulgaris HOM05D005454 ORTHO05D006781 8.5e-48 193.7 125 76.0
THA.LOC104808143 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 8.5e-48 193.7 121 76.0
BolC6t38153H Brassica oleracea HOM05D005454 ORTHO05D006781 1.5e-47 193.0 126 73.8
BraA07t31955Z Brassica rapa HOM05D005454 ORTHO05D006781 1.5e-47 193.0 126 73.0
Sc18g0003140 Simmondsia chinensis HOM05D005454 ORTHO05D006781 1.5e-47 193.0 115 80.9
FAN25G3791 Fragaria x ananassa HOM05D005454 ORTHO05D006781 2.5e-47 192.2 127 75.6
Carub.0002s2625 Capsella rubella HOM05D005454 ORTHO05D006781 5.5e-47 191.0 126 71.4
PSO675G7587 Papaver somniferum HOM05D005454 ORTHO05D006781 5.5e-47 191.0 113 80.5
BcaC08g47498 Brassica carinata HOM05D005454 ORTHO05D006781 7.2e-47 190.7 126 72.2
C06p53270 Brassica napus HOM05D005454 ORTHO05D006781 7.2e-47 190.7 126 72.2
BolC6t40345H Brassica oleracea HOM05D005454 ORTHO05D006781 7.2e-47 190.7 126 72.2
AUR62030518 Chenopodium quinoa HOM05D005454 ORTHO05D006781 7.2e-47 190.7 129 74.4
Thhalv10019255m.g Eutrema salsugineum HOM05D005454 ORTHO05D006781 7.2e-47 190.7 127 70.9
AUR62030774 Chenopodium quinoa HOM05D005454 ORTHO05D006781 9.4e-47 190.3 129 73.6
ECA240G0828 Erigeron canadensis HOM05D005454 ORTHO05D006781 1.2e-46 189.9 127 73.2
THA.LOC104812391 Tarenaya hassleriana HOM05D005454 ORTHO05D006781 1.2e-46 189.9 121 75.2
AT1G79390 Arabidopsis thaliana HOM05D005454 ORTHO05D006781 3.6e-46 188.3 126 69.8
MELO3C019617.2 Cucumis melo HOM05D005454 ORTHO05D006781 3.6e-46 188.3 147 66.7
Psat4g141200 Pisum sativum HOM05D005454 ORTHO05D006781 3.6e-46 188.3 119 77.3
MSTRG.16083 Avicennia marina HOM05D005454 ORTHO05D006781 6.1e-46 187.6 119 76.5
Medtr8g447300 Medicago truncatula HOM05D005454 ORTHO05D006781 8.0e-46 187.2 119 75.6
arahy.Tifrunner.gnm1.ann1.DLUG3E Arachis hypogaea HOM05D005454 ORTHO05D006781 1.8e-45 186.0 122 73.8
AL2G40000 Arabidopsis lyrata HOM05D005454 ORTHO05D006781 2.3e-45 185.7 123 70.7
Ca_26272_v3 Cicer arietinum L. HOM05D005454 ORTHO05D006781 3.0e-45 185.3 119 74.8
arahy.Tifrunner.gnm1.ann1.TLTS2V Arachis hypogaea HOM05D005454 ORTHO05D006781 4.0e-45 184.9 125 72.0
Lalb_Chr03g0031911 Lupinus albus HOM05D005454 ORTHO05D006781 6.7e-45 184.1 117 71.8
TPR.G8202 Trifolium pratense HOM05D005454 ORTHO05D006781 3.3e-44 181.8 111 73.9
SEGI_00588 Sequoiadendron giganteum HOM05D005454 ORTHO05D006781 1.2e-41 173.3 127 64.6
CDE02G1314 Ceratophyllum demersum HOM05D000236 ORTHO05D000192 1.1e-31 140.2 88 81.8
Hma1.2p1_0151F.1_g066990 Hydrangea macrophylla HOM05D005454 ORTHO05D006781 1.7e-27 126.3 68 83.8
Gohir.A03G171875 Gossypium hirsutum HOM05D005454 ORTHO05D006781 2.2e-27 125.9 73 79.5
HPP92_015989 Vanilla planifolia HOM05D005454 ORTHO05D006781 3.7e-27 125.2 73 78.1
Pp3c27_5100 Physcomitrium patens HOM05D005454 ORTHO05D006781 2.4e-26 122.5 112 50.9
CSS0036802 Camellia sinensis var. sinensis HOM05D005454 ORTHO05D006781 3.1e-26 122.1 67 82.1
Mapoly0011s0156 Marchantia polymorpha HOM05D005454 ORTHO05D006781 4.1e-26 121.7 112 53.6
Sp5g34440 Schrenkiella parvula HOM05D005454 ORTHO05D006781 1.2e-25 120.2 83 72.3
AagrBONN_evm.TU.Sc2ySwM_117.1988 Anthoceros agrestis HOM05D005454 ORTHO05D006781 2.7e-25 119.0 112 49.1
Nn7g38396 Nelumbo nucifera HOM05D005454 ORTHO05D006781 4.5e-25 118.2 77 70.1
Haze_01788 Corylus avellana HOM05D005454 ORTHO05D006781 1.0e-24 117.1 72 69.4
Haze_08480 Corylus avellana HOM05D005454 ORTHO05D006781 6.6e-24 114.4 68 73.5
Cfa017755 Carpinus fangiana HOM05D005454 ORTHO05D006781 8.6e-24 114.0 68 72.1
Haze_18487 Corylus avellana HOM05D005454 ORTHO05D006781 1.1e-23 113.6 67 73.1
A07p44460 Brassica napus HOM05D005454 ORTHO05D006781 4.7e-22 108.2 68 70.6
Cfa017757 Carpinus fangiana HOM05D005454 ORTHO05D006781 8.0e-22 107.5 59 88.1
Potri.010G174700 Populus trichocarpa HOM05D005454 ORTHO05D006781 1.4e-21 106.7 59 88.1
Atru.chr1.31 Acer truncatum HOM05D005454 ORTHO05D006781 1.2e-20 103.6 82 67.1
Actinidia03633 Actinidia chinensis HOM05D005454 ORTHO05D012925 1.7e-19 99.8 60 80.0
QL04p094659 Quercus lobata HOM05D005454 ORTHO05D006781 8.3e-19 97.4 60 81.7
CDE04G2596 Ceratophyllum demersum HOM05D005454 ORTHO05D006781 1.1e-18 97.1 71 67.6
CARHR073040 Cardamine hirsuta HOM05D005454 ORTHO05D006781 5.4e-18 94.7 58 70.7
CBR_g2846 Chara braunii HOM05D005454 ORTHO05D006781 1.6e-17 93.2 114 40.4
Gohir.A04G138000 Gossypium hirsutum HOM05D005454 ORTHO05D006781 1.6e-17 93.2 57 82.5
CARHR073050 Cardamine hirsuta HOM05D005454 ORTHO05D006781 2.3e-16 89.4 57 77.2
BolC8t48807H Brassica oleracea HOM05D005454 ORTHO05D006781 6.6e-16 87.8 59 72.9
Cc00_g28770 Coffea canephora HOM05D001769 ORTHO05D001695 1.5e-15 86.7 63 66.7
DCAR_013713 Daucus carota HOM05D005454 ORTHO05D006781 2.8e-14 82.4 123 41.5
RcHm_v2.0_Chr5g0023191 Rosa chinensis HOM05D005454 ORTHO05D006781 1.4e-13 80.1 69 58.0
SMO367G0923 Selaginella moellendorffii HOM05D005454 ORTHO05D006781 1.4e-13 80.1 101 40.6
C06p00690 Brassica napus HOM05D005454 ORTHO05D006781 9.8e-12 73.9 53 67.9
BolC6t35206H Brassica oleracea HOM05D005454 ORTHO05D006781 9.8e-12 73.9 53 67.9
BcaC08g42854 Brassica carinata HOM05D005454 ORTHO05D006781 1.7e-11 73.2 46 73.9
C03p71170 Brassica napus HOM05D005454 ORTHO05D006781 3.7e-11 72.0 53 66.0
SGA_v2.0_scaffold29G12256 Striga asiatica HOM05D005454 ORTHO05D006781 2.7e-09 65.9 46 63.0
QL04p094979 Quercus lobata HOM05D000510 ORTHO05D001548 9.5e-07 57.4 45 64.4


User provided reference genes

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