Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 1.3e-174 616.3 316 100.0
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 3.6e-156 555.1 315 89.5
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 5.0e-150 534.6 317 85.5
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 1.6e-148 529.6 315 84.8
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 3.6e-148 528.5 315 84.8
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.0e-147 526.9 316 84.5
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 1.4e-147 526.6 315 84.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 3.0e-147 525.4 315 84.1
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 3.0e-147 525.4 315 84.4
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 1.5e-146 523.1 316 83.5
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.0e-146 522.7 316 84.2
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 3.3e-146 521.9 316 85.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 3.3e-146 521.9 315 83.5
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 4.4e-146 521.5 315 83.5
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 5.7e-146 521.2 315 82.5
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 1.3e-145 520.0 315 83.2
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.7e-145 518.5 330 79.7
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 4.8e-145 518.1 315 84.1
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 4.8e-145 518.1 315 83.5
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 8.2e-145 517.3 315 83.2
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 8.2e-145 517.3 315 82.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.1e-144 516.9 315 82.2
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 1.4e-144 516.5 316 83.2
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.4e-144 516.5 321 81.9
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.8e-144 516.2 316 81.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.4e-144 515.8 317 82.3
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.1e-144 515.0 316 82.3
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 4.1e-144 515.0 320 81.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 5.3e-144 514.6 315 82.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 7.0e-144 514.2 320 81.2
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 1.2e-143 513.5 315 82.5
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.0e-143 512.7 315 82.9
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 2.0e-143 512.7 320 81.6
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 2.0e-143 512.7 320 80.0
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 4.5e-143 511.5 315 82.2
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 4.5e-143 511.5 314 82.8
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 5.9e-143 511.1 315 82.9
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 5.9e-143 511.1 320 81.2
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 7.7e-143 510.8 315 81.6
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.0e-142 510.4 317 81.1
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.0e-142 510.4 315 83.2
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.0e-142 510.4 315 81.0
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 1.7e-142 509.6 322 79.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 2.2e-142 509.2 315 81.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 2.2e-142 509.2 318 80.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.2e-142 509.2 314 82.2
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.9e-142 508.8 318 80.8
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.1e-141 506.9 314 80.9
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.1e-141 506.9 315 80.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.5e-141 506.5 316 80.4
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.5e-141 505.8 317 80.1
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 5.5e-141 504.6 326 77.9
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 7.2e-141 504.2 315 81.9
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 7.2e-141 504.2 314 80.3
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 7.2e-141 504.2 320 80.0
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.2e-140 503.4 315 80.3
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 1.2e-140 503.4 315 80.3
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.6e-140 503.1 325 79.1
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 1.6e-140 503.1 316 79.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.7e-140 502.3 326 79.8
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.7e-140 501.5 315 80.6
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.4e-139 500.0 326 79.4
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.2e-138 496.9 315 81.0
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.6e-138 495.7 315 78.7
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 2.6e-138 495.7 315 78.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.6e-138 495.7 317 79.2
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 4.4e-138 495.0 319 78.7
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 4.4e-138 495.0 320 78.8
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 5.7e-138 494.6 322 78.6
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 7.5e-138 494.2 323 78.3
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 7.5e-138 494.2 317 78.2
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 9.7e-138 493.8 319 78.7
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 9.7e-138 493.8 316 78.8
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 9.7e-138 493.8 316 78.8
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 9.7e-138 493.8 314 82.5
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 1.3e-137 493.4 315 79.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.7e-137 493.0 315 78.4
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 2.2e-137 492.7 316 78.5
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 2.8e-137 492.3 318 78.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.8e-137 491.5 353 74.2
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 8.3e-137 490.7 316 78.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.1e-136 490.3 346 74.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.8e-136 489.6 311 78.1
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-136 489.6 346 74.6
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 3.1e-136 488.8 316 78.2
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 7.0e-136 487.6 293 82.9
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 7.0e-136 487.6 320 76.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 1.2e-135 486.9 320 78.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 1.6e-135 486.5 320 77.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 7.7e-135 484.2 309 78.3
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 1.0e-134 483.8 311 77.8
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.0e-134 483.8 314 77.4
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 1.7e-134 483.0 318 77.7
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 2.2e-134 482.6 311 78.1
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 8.5e-134 480.7 320 77.2
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.5e-133 479.2 322 77.0
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.2e-133 478.8 311 77.5
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 2.1e-132 476.1 318 77.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 2.7e-132 475.7 319 76.2
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.7e-132 475.7 314 76.4
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 3.6e-132 475.3 319 76.2
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 3.4e-130 468.8 320 75.6
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.7e-129 466.5 317 76.0
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.7e-129 466.5 317 76.0
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 3.8e-126 455.3 316 74.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.2e-125 451.8 317 75.1
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 4.2e-125 451.8 317 75.1
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 5.7e-122 441.4 322 72.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 5.6e-117 424.9 320 66.9
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 9.5e-117 424.1 271 80.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 4.7e-116 421.8 321 71.3
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 4.9e-113 411.8 323 63.2
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 4.4e-106 388.7 314 65.9
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 7.5e-106 387.9 283 72.1
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 9.8e-106 387.5 322 60.6
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.2e-103 380.6 261 74.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 4.7e-100 368.6 324 63.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 9.9e-98 360.9 312 62.5
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.6e-84 317.0 314 57.3
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 6.4e-73 278.5 197 72.1
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 1.2e-71 274.2 203 64.5
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 2.7e-71 273.1 323 44.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.0e-70 271.2 247 60.7
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.4e-66 256.1 326 41.7
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 1.0e-65 254.6 339 43.4
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.3e-65 254.2 326 47.5
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 2.0e-58 230.3 316 44.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 2.2e-57 226.9 134 82.8
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 1.0e-54 218.0 356 38.8
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.1e-48 198.0 105 88.6
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 2.0e-45 187.2 319 37.3
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 8.2e-44 181.8 313 35.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 3.0e-38 163.3 131 62.6
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-37 160.2 81 88.9
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 7.4e-37 158.7 81 87.7
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 2.8e-36 156.8 98 78.6
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.5e-32 144.4 115 69.6
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 4.0e-30 136.3 81 80.2
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.1e-24 118.2 117 55.6
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 9.4e-24 115.2 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.0e-22 110.2 58 82.8
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.3e-20 102.1 79 68.4
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 5.5e-16 89.4 65 69.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 1.6e-15 87.8 55 76.4
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 3.0e-14 83.6 102 47.1
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 2.4e-11 73.9 96 43.8
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 2.9e-09 67.0 43 74.4
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 4.2e-08 63.2 124 37.9
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 4.2e-08 63.2 50 58.0
QL05p082760 Quercus lobata HOM05D004608 ORTHO05D338097 9.5e-08 62.0 37 75.7
arahy.Tifrunner.gnm1.ann1.C1KQ7I Arachis hypogaea HOM05D004608 ORTHO05D006012 6.8e-06 55.8 50 62.0


User provided reference genes

Program Settings