Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0624 Trochodendron aralioides HOM05D006908 ORTHO05D008662 6.3e-224 780.4 380 100.0
Nn8g39204 Nelumbo nucifera HOM05D006908 ORTHO05D008662 1.8e-138 496.5 388 68.8
Dinv38042 Davidia involucrata HOM05D006908 ORTHO05D008662 8.7e-125 451.1 365 65.5
QL05p023344 Quercus lobata HOM05D006908 ORTHO05D008662 6.9e-122 441.4 347 65.4
Haze_16403 Corylus avellana HOM05D006908 ORTHO05D008662 8.2e-115 417.9 369 60.4
GSVIVG01017098001 Vitis vinifera HOM05D006908 ORTHO05D008662 2.4e-114 416.4 346 63.0
PSO782G4818 Papaver somniferum HOM05D006908 ORTHO05D008662 4.1e-114 415.6 374 60.7
Hma1.2p1_0323F.1_g125120 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 5.3e-114 415.2 380 58.2
MD17G1194300 Malus domestica HOM05D006908 ORTHO05D008662 5.3e-114 415.2 347 63.4
Thecc.06G089400 Theobroma cacao HOM05D006908 ORTHO05D008662 1.5e-113 413.7 347 62.2
Atru.chr1.3281 Acer truncatum HOM05D006908 ORTHO05D008662 2.0e-113 413.3 344 61.0
Actinidia01807 Actinidia chinensis HOM05D006908 ORTHO05D008662 7.7e-113 411.4 365 60.8
Gorai.006G098400 Gossypium raimondii HOM05D006908 ORTHO05D008662 7.7e-113 411.4 344 62.2
Lj5C59T9 Lonicera japonica HOM05D006908 ORTHO05D008662 3.8e-112 409.1 345 62.9
Rhsim08G0222000 Rhododendron simsii HOM05D006908 ORTHO05D008662 9.4e-111 404.4 393 59.0
Sabra01G0145800 Salix brachista HOM05D006908 ORTHO05D008662 4.6e-110 402.1 358 60.9
RcHm_v2.0_Chr2g0138011 Rosa chinensis HOM05D006908 ORTHO05D008662 1.0e-109 401.0 364 59.1
COL.COLO4_30388 Corchorus olitorius HOM05D006908 ORTHO05D008662 1.4e-109 400.6 350 59.7
Duzib160G0703 Durio zibethinus HOM05D006908 ORTHO05D008662 1.8e-109 400.2 342 62.3
PSO063G2605 Papaver somniferum HOM05D006908 ORTHO05D008662 3.9e-109 399.1 375 58.4
CiPaw.01G238600 Carya illinoinensis HOM05D006908 ORTHO05D008662 8.8e-109 397.9 351 60.1
DCAR_023055 Daucus carota HOM05D006908 ORTHO05D008662 1.7e-107 393.7 351 61.3
CANSAT56G3342 Cannabis sativa HOM05D006908 ORTHO05D008662 2.2e-107 393.3 374 57.2
FAN09G3067 Fragaria x ananassa HOM05D006908 ORTHO05D008662 2.8e-107 392.9 378 56.1
PGR102G2040 Punica granatum HOM05D006908 ORTHO05D008662 3.7e-107 392.5 368 56.0
PGSC0003DMG400005687 Solanum tuberosum HOM05D006908 ORTHO05D008662 3.7e-107 392.5 362 59.4
ECA247G1365 Erigeron canadensis HOM05D006908 ORTHO05D008662 4.8e-107 392.1 382 56.8
FAN05G1986 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.1e-106 391.0 386 55.2
Prupe.3G070300 Prunus persica HOM05D006908 ORTHO05D008662 1.1e-106 391.0 346 61.0
Ciclev10025928m.g Citrus clementina HOM05D006908 ORTHO05D008662 1.2e-105 387.5 377 57.3
FvH4_6g31280 Fragaria vesca HOM05D006908 ORTHO05D008662 1.2e-105 387.5 377 56.5
Sopen03g039000 Solanum pennellii HOM05D006908 ORTHO05D008662 2.0e-105 386.7 349 59.9
Lj3g0017668 Lotus japonicus HOM05D006908 ORTHO05D008662 4.5e-105 385.6 369 56.9
vmacro18903 Vaccinium macrocarpon HOM05D006908 ORTHO05D008662 5.9e-105 385.2 420 53.3
ClCG07G013040 Citrullus lanatus HOM05D006908 ORTHO05D008662 7.7e-105 384.8 355 58.9
Lalb_Chr22g0351301 Lupinus albus HOM05D006908 ORTHO05D008662 1.0e-104 384.4 347 58.2
Sc10g0007370 Simmondsia chinensis HOM05D006908 ORTHO05D008662 1.3e-104 384.0 359 57.1
CsaV3_3G025130 Cucumis sativus L. HOM05D006908 ORTHO05D008662 1.7e-104 383.6 350 58.3
MELO3C012958.2 Cucumis melo HOM05D006908 ORTHO05D008662 5.0e-104 382.1 350 58.3
Aqoxy7G01689 Aquilegia oxysepala HOM05D006908 ORTHO05D008662 1.1e-103 380.9 395 56.5
CAN.G438.72 Capsicum annuum HOM05D006908 ORTHO05D008662 5.5e-103 378.6 361 58.7
MSTRG.11073 Avicennia marina HOM05D006908 ORTHO05D008662 9.4e-103 377.9 350 58.0
Nitab4.5_0002308g0060 Nicotiana tabacum HOM05D006908 ORTHO05D008662 1.6e-102 377.1 376 57.2
EL10Ac9g22006 Beta vulgaris HOM05D006908 ORTHO05D008662 2.1e-102 376.7 376 56.1
Cc04_g03340 Coffea canephora HOM05D006908 ORTHO05D008662 3.6e-102 375.9 372 56.7
Oeu063957.2 Olea europaea HOM05D006908 ORTHO05D008662 4.7e-102 375.6 341 58.9
Gohir.D09G082700 Gossypium hirsutum HOM05D006908 ORTHO05D008662 1.0e-101 374.4 344 58.1
Migut.I00872 Erythranthe guttata HOM05D006908 ORTHO05D008662 1.4e-101 374.0 352 56.2
Eucgr.J02986 Eucalyptus grandis HOM05D006908 ORTHO05D008662 1.8e-101 373.6 345 58.3
HanXRQChr02g0032801 Helianthus annuus HOM05D006908 ORTHO05D008662 2.3e-101 373.2 380 54.2
Sed0021689 Sechium edule HOM05D006908 ORTHO05D008662 2.3e-101 373.2 355 57.2
TPR.G37174 Trifolium pratense HOM05D006908 ORTHO05D008662 2.3e-101 373.2 364 55.8
Medtr2g102040 Medicago truncatula HOM05D006908 ORTHO05D008662 3.0e-101 372.9 367 55.0
Ca_01120_v3 Cicer arietinum L. HOM05D006908 ORTHO05D008662 1.3e-99 367.5 370 55.7
SalBow2G2262 Salvia bowleyana HOM05D006908 ORTHO05D008662 1.3e-99 367.5 365 54.8
CSS0010187 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 1.7e-99 367.1 309 62.1
Glyma.15G014900 Glycine max HOM05D006908 ORTHO05D008662 2.8e-99 366.3 354 55.6
VMungo1080G1808 Vigna mungo HOM05D006908 ORTHO05D008662 2.8e-99 366.3 357 55.5
Phvul.005G170700 Phaseolus vulgaris HOM05D006908 ORTHO05D008662 8.2e-99 364.8 363 54.3
arahy.Tifrunner.gnm1.ann1.0IDI1A Arachis hypogaea HOM05D006908 ORTHO05D008662 4.1e-98 362.5 346 56.9
arahy.Tifrunner.gnm1.ann1.UK934I Arachis hypogaea HOM05D006908 ORTHO05D008662 4.1e-98 362.5 346 56.9
Manes.11G045900 Manihot esculenta HOM05D006908 ORTHO05D008662 2.0e-97 360.1 357 56.3
Ah.01g005440 Amaranthus hybridus HOM05D006908 ORTHO05D008662 2.6e-97 359.8 358 54.5
CDE02G0011 Ceratophyllum demersum HOM05D006908 ORTHO05D008662 4.5e-97 359.0 348 56.6
Solyc03g120130.4 Solanum lycopersicum HOM05D006908 ORTHO05D008662 3.8e-96 355.9 350 56.6
Potri.001G181200 Populus trichocarpa HOM05D006908 ORTHO05D008662 2.5e-95 353.2 304 62.5
HPP92_003725 Vanilla planifolia HOM05D006908 ORTHO05D008662 2.5e-95 353.2 344 52.3
Aa31LG4G230 Aethionema arabicum HOM05D006908 ORTHO05D008662 2.6e-92 343.2 349 54.4
Hund06614 Selenicereus undatus HOM05D006908 ORTHO05D008662 2.6e-92 343.2 344 55.5
AUR62042927 Chenopodium quinoa HOM05D006908 ORTHO05D008662 1.7e-91 340.5 383 51.2
THA.LOC104812520 Tarenaya hassleriana HOM05D006908 ORTHO05D008662 1.7e-91 340.5 349 53.0
Nitab4.5_0000671g0150 Nicotiana tabacum HOM05D006908 ORTHO05D008662 7.0e-90 335.1 380 52.4
Gohir.A09G082800 Gossypium hirsutum HOM05D006908 ORTHO05D008662 2.0e-89 333.6 349 53.0
Sp5g35850 Schrenkiella parvula HOM05D006908 ORTHO05D008662 2.6e-89 333.2 342 53.8
TWI75G1463 Tripterygium wilfordii HOM05D006908 ORTHO05D008662 2.6e-89 333.2 356 52.5
Zm00001eb275430 Zea mays HOM05D006908 ORTHO05D008662 3.5e-89 332.8 356 50.3
Os06g0639300 Oryza sativa ssp. japonica HOM05D006908 ORTHO05D008662 1.9e-87 327.0 352 49.7
Peaxi162Scf00015g00453 Petunia axillaris HOM05D006908 ORTHO05D008662 2.1e-86 323.6 347 53.0
Hma1.2p1_0323F.1_g125130 Hydrangea macrophylla HOM05D006908 ORTHO05D008662 6.1e-86 322.0 380 48.9
C06p54330 Brassica napus HOM05D002960 ORTHO05D003632 1.4e-85 320.9 353 49.6
BolC6t40444H Brassica oleracea HOM05D002960 ORTHO05D003632 1.4e-85 320.9 353 49.6
Psat5g298720 Pisum sativum HOM05D006908 ORTHO05D008662 1.8e-85 320.5 329 52.3
Thhalv10018901m.g Eutrema salsugineum HOM05D006908 ORTHO05D008662 4.4e-84 315.8 356 49.7
AT1G79915 Arabidopsis thaliana HOM05D006908 ORTHO05D008662 2.2e-83 313.5 345 50.7
BcaC08g47561 Brassica carinata HOM05D006908 ORTHO05D008662 1.8e-82 310.5 348 49.7
Carub.0002s2758 Capsella rubella HOM05D006908 ORTHO05D008662 2.4e-82 310.1 354 49.4
BcaC08g47592 Brassica carinata HOM05D002960 ORTHO05D003632 1.6e-81 307.4 351 48.4
CARHR074570 Cardamine hirsuta HOM05D006908 ORTHO05D008662 2.7e-81 306.6 351 48.4
SEGI_13943 Sequoiadendron giganteum HOM05D006908 ORTHO05D008662 2.7e-81 306.6 382 45.5
unitig_52.g17450 Utricularia gibba HOM05D006908 ORTHO05D008662 3.2e-79 299.7 376 46.5
Cfa002075 Carpinus fangiana HOM05D006908 ORTHO05D008662 6.1e-78 295.4 290 55.5
AUR62016450 Chenopodium quinoa HOM05D006908 ORTHO05D008662 8.8e-77 291.6 331 51.1
ATR0602G186 Amborella trichopoda HOM05D006908 ORTHO05D008662 1.2e-76 291.2 269 54.6
MBI15_g13424_MAGBIO Magnolia biondii HOM05D006908 ORTHO05D008662 1.7e-75 287.3 307 55.4
BraA07t32051Z Brassica rapa HOM05D006908 ORTHO05D008662 7.0e-74 282.0 362 46.4
SHI10939 Sapria himalayana HOM05D006908 ORTHO05D008662 9.1e-74 281.6 273 55.7
Cpa.g.sc0.185 Carica papaya HOM05D006908 ORTHO05D008662 4.5e-73 279.3 214 64.0
Mapoly0072s0004 Marchantia polymorpha HOM05D006908 ORTHO05D008662 4.1e-66 256.1 374 41.4
AUR62033073 Chenopodium quinoa HOM05D006908 ORTHO05D008662 4.7e-62 242.7 337 44.5
Lsat_1_v5_gn_1_35121 Lactuca sativa HOM05D006908 ORTHO05D008662 6.1e-62 242.3 219 59.4
CSS0029579 Camellia sinensis var. sinensis HOM05D006908 ORTHO05D008662 8.0e-62 241.9 182 65.4
A07p45490 Brassica napus HOM05D006908 ORTHO05D008662 1.8e-61 240.7 396 40.2
Pp3c16_8290 Physcomitrium patens HOM05D006908 ORTHO05D008662 1.6e-57 227.6 379 36.4
AagrBONN_evm.TU.Sc2ySwM_344.5185 Anthoceros agrestis HOM05D006908 ORTHO05D008662 1.9e-55 220.7 350 39.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 4.0e-53 213.0 339 36.6
FAN02G3381 Fragaria x ananassa HOM05D006908 ORTHO05D008662 1.9e-47 194.1 234 47.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 4.4e-44 183.0 363 35.3
SGA_v2.0_scaffold37G14828 Striga asiatica HOM05D006908 ORTHO05D008662 2.4e-34 150.6 168 52.4
C09p24020 Brassica napus HOM05D006908 ORTHO05D008662 4.6e-33 146.4 192 44.8
SMO347G0515 Selaginella moellendorffii HOM05D006908 ORTHO05D008662 1.1e-29 135.2 225 38.7
Cpa.g.sc41.12 Carica papaya HOM05D006908 ORTHO05D008662 5.1e-24 116.3 78 69.2
AL2G41640 Arabidopsis lyrata HOM05D006908 ORTHO05D008662 9.6e-23 112.1 149 41.6
BolC9t55322H Brassica oleracea HOM05D006908 ORTHO05D008662 6.2e-22 109.4 96 58.3
Actinidia32749 Actinidia chinensis HOM05D006908 ORTHO05D008662 1.4e-18 98.2 102 55.9
FAN14G1268 Fragaria x ananassa HOM05D006908 ORTHO05D008662 5.5e-10 69.7 77 46.8
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 3.5e-09 67.0 151 31.1
Cpa.g.sc41.10 Carica papaya HOM05D006908 ORTHO05D008662 3.0e-08 63.9 93 47.3
HPP92_021095 Vanilla planifolia HOM05D001602 ORTHO05D001470 3.9e-08 63.5 162 33.3
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 1.1e-07 62.0 163 29.4
Cfa026553 Carpinus fangiana HOM05D005677 ORTHO05D006966 2.5e-07 60.8 220 28.6
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 2.5e-07 60.8 163 28.8
ClCG01G019540 Citrullus lanatus HOM05D005677 ORTHO05D006966 3.3e-07 60.5 181 28.7
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 4.3e-07 60.1 204 28.9
Lj2A482T63 Lonicera japonica HOM05D006745 ORTHO05D008449 4.3e-07 60.1 158 31.0
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 5.7e-07 59.7 155 28.4
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 5.7e-07 59.7 208 26.0
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 7.4e-07 59.3 204 29.9
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 7.4e-07 59.3 233 25.3
Nitab4.5_0000178g0070 Nicotiana tabacum HOM05D005677 ORTHO05D006966 9.6e-07 58.9 175 27.4
Peaxi162Scf00366g10014 Petunia axillaris HOM05D005677 ORTHO05D006966 9.6e-07 58.9 175 28.0
Nn2g12315 Nelumbo nucifera HOM05D005677 ORTHO05D006966 1.3e-06 58.5 179 33.5
Nitab4.5_0001385g0030 Nicotiana tabacum HOM05D005677 ORTHO05D006966 1.3e-06 58.5 175 27.4
BraA07t30623Z Brassica rapa HOM05D000058 ORTHO05D000255 1.6e-06 58.2 237 27.4
Cpa.g.c43825 Carica papaya HOM05D006908 ORTHO05D008662 1.6e-06 58.2 34 79.4
AUR62007566 Chenopodium quinoa HOM05D005677 ORTHO05D006966 1.6e-06 58.2 167 28.7
Thhalv10018937m.g Eutrema salsugineum HOM05D001602 ORTHO05D001470 1.6e-06 58.2 168 31.5
Lj2P453T29 Lonicera japonica HOM05D005677 ORTHO05D006966 1.6e-06 58.2 169 30.8
CARHR066370 Cardamine hirsuta HOM05D001602 ORTHO05D001470 2.1e-06 57.8 209 29.7
CARHR160400 Cardamine hirsuta HOM05D005677 ORTHO05D006966 2.1e-06 57.8 136 32.4
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 2.1e-06 57.8 204 28.4
Oeu041446.1 Olea europaea HOM05D005677 ORTHO05D006966 2.1e-06 57.8 182 29.1
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 2.1e-06 57.8 204 29.4
CSS0028163 Camellia sinensis var. sinensis HOM05D005677 ORTHO05D006966 2.8e-06 57.4 139 33.1
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 2.8e-06 57.4 182 29.1
PGSC0003DMG400003597 Solanum tuberosum HOM05D005677 ORTHO05D006966 2.8e-06 57.4 178 28.7
HanXRQChr09g0261461 Helianthus annuus HOM05D005677 ORTHO05D006966 3.7e-06 57.0 140 31.4
Oeu042263.1 Olea europaea HOM05D005677 ORTHO05D006966 3.7e-06 57.0 177 27.7
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 4.8e-06 56.6 177 28.8
AUR62004051 Chenopodium quinoa HOM05D005677 ORTHO05D006966 4.8e-06 56.6 168 29.8
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.8e-06 56.6 163 28.8
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 6.2e-06 56.2 164 26.2
Cfa004307 Carpinus fangiana HOM05D005677 ORTHO05D006966 6.2e-06 56.2 181 28.7
Cre17.g747647 Chlamydomonas reinhardtii HOM05D002553 ORTHO05D002767 6.2e-06 56.2 222 28.8
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 6.2e-06 56.2 162 27.2
Actinidia19186 Actinidia chinensis HOM05D005677 ORTHO05D006966 8.2e-06 55.8 176 27.8
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 8.2e-06 55.8 177 28.2
FAN28G0162 Fragaria x ananassa HOM05D005677 ORTHO05D006966 8.2e-06 55.8 195 29.7
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 8.2e-06 55.8 105 34.3


User provided reference genes

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