Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.5e-49 199.1 97 100.0
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 1.6e-35 152.5 94 76.6
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 2.0e-25 119.0 101 57.4
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 9.9e-25 116.7 94 60.6
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 6.4e-24 114.0 96 56.2
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 8.7e-21 103.6 93 57.0
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.1e-20 103.2 99 56.6
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 1.9e-20 102.4 84 60.7
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 1.9e-20 102.4 96 56.2
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 2.5e-20 102.1 96 57.3
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 3.3e-20 101.7 98 55.1
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 1.6e-19 99.4 93 55.9
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 2.1e-19 99.0 95 53.7
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 2.8e-19 98.6 96 53.1
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 3.7e-19 98.2 95 52.6
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 6.2e-19 97.4 96 57.3
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 1.1e-18 96.7 99 51.5
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 1.4e-18 96.3 83 60.2
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 1.4e-18 96.3 98 52.0
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.8e-18 95.9 103 50.5
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 3.1e-18 95.1 82 62.2
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 3.1e-18 95.1 87 59.8
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 9.0e-18 93.6 94 51.1
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 9.0e-18 93.6 97 52.6
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 9.0e-18 93.6 97 52.6
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 3.4e-17 91.7 99 52.5
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.4e-17 91.7 97 52.6
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 4.5e-17 91.3 97 51.5
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 4.5e-17 91.3 98 51.0
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 1.0e-16 90.1 94 48.9
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 1.0e-16 90.1 94 50.0
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 1.0e-16 90.1 88 56.8
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 1.7e-16 89.4 95 52.6
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 2.9e-16 88.6 104 48.1
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 1.1e-15 86.7 98 51.0
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 1.4e-15 86.3 102 52.0
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 1.9e-15 85.9 94 50.0
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 3.2e-15 85.1 75 56.0
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 5.5e-15 84.3 96 51.0
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 7.1e-15 84.0 75 56.0
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 9.3e-15 83.6 94 50.0
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 1.2e-14 83.2 87 54.0
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 1.2e-14 83.2 84 52.4
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 1.6e-14 82.8 82 53.7
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 2.1e-14 82.4 87 49.4
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 4.6e-14 81.3 84 51.2
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 6.0e-14 80.9 95 44.2
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 7.9e-14 80.5 82 56.1
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 1.8e-13 79.3 104 47.1
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 3.0e-13 78.6 98 45.9
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 3.9e-13 78.2 83 51.8
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.1e-13 77.8 85 45.9
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.5e-12 76.3 75 52.0
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 1.5e-12 76.3 75 52.0
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 1.9e-12 75.9 94 41.5
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 1.9e-12 75.9 75 48.0
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 5.7e-12 74.3 77 48.1
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 7.4e-12 73.9 77 48.1
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 7.4e-12 73.9 78 48.7
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 2.2e-11 72.4 80 47.5
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 1.8e-10 69.3 73 47.9
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 2.4e-10 68.9 84 45.2
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 1.2e-09 66.6 83 42.2
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 4.5e-09 64.7 76 42.1
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.5e-09 64.7 57 56.1
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.6e-09 63.9 73 43.8
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.3e-08 63.2 80 40.0
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 1.3e-08 63.2 80 40.0
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 1.7e-08 62.8 82 42.7
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 2.9e-08 62.0 80 38.8
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 3.8e-08 61.6 82 43.9
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 6.5e-08 60.8 78 44.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.9e-07 59.3 78 43.6
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 2.5e-07 58.9 79 43.0
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 2.5e-07 58.9 79 43.0
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 3.2e-07 58.5 78 43.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 4.2e-07 58.2 82 41.5
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 9.3e-07 57.0 79 40.5
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 9.3e-07 57.0 79 40.5
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 9.3e-07 57.0 79 40.5
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 9.3e-07 57.0 79 39.2
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 1.6e-06 56.2 84 39.3
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 2.1e-06 55.8 84 39.3
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 2.7e-06 55.5 79 41.8
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 2.7e-06 55.5 78 39.7
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 4.6e-06 54.7 84 38.1


User provided reference genes

Program Settings