Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1714.5 920 100.0
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1411.7 940 83.0
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 1350.1 918 79.7
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 1250.0 941 72.5
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1248.8 946 73.7
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 1247.6 946 73.6
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 1247.3 938 73.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 1246.1 939 72.6
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 1229.9 939 73.3
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1224.9 938 71.4
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1201.0 937 70.3
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 1198.3 942 70.4
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1194.9 934 69.0
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1192.2 939 69.9
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 1190.6 938 70.1
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 1186.8 939 69.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1179.5 940 68.7
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 1176.4 945 69.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 1161.4 941 68.7
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1157.9 943 68.3
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 1157.5 928 69.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1156.0 938 67.7
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1153.3 927 67.7
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1146.7 932 68.5
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 1146.3 940 67.1
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 1145.6 940 67.2
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1143.3 927 67.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 1140.6 927 67.2
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1139.0 932 67.2
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 1137.5 948 66.9
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 1134.4 927 67.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 1134.4 939 66.6
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 1128.6 942 66.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 1128.2 946 66.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1127.1 927 67.7
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 1126.3 936 65.8
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1124.0 936 66.8
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 1118.2 943 66.1
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1118.2 948 66.6
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 1115.5 942 67.1
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 1112.4 938 67.4
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 1108.2 952 64.9
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 1104.4 943 65.7
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 1101.3 935 65.3
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 1100.9 942 65.3
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 1098.6 936 66.6
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1098.2 895 68.5
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 1092.0 934 64.8
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 1090.1 918 65.3
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 1089.3 863 67.9
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 1087.4 1104 59.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 1083.2 957 62.6
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 1080.9 1021 61.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 1080.5 917 65.4
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 1078.5 908 66.7
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 1076.6 935 64.2
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 6.3e-312 1074.7 949 63.4
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 6.3e-312 1074.3 938 64.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 5.3e-309 1064.3 914 67.0
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 9.0e-309 1063.5 956 61.9
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 3.4e-308 1061.6 902 66.6
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 1.3e-307 1059.7 956 62.9
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 4.2e-306 1054.7 1018 59.9
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 9.3e-306 1053.5 918 64.2
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 9.3e-306 1053.5 936 66.2
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 1.0e-304 1050.0 900 65.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 3.0e-304 1048.5 898 65.8
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 1.4e-301 1039.6 901 65.6
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 5.3e-301 1037.7 900 64.3
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 4.5e-300 1034.6 893 66.3
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.3e-299 1033.1 897 61.4
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 2.9e-299 1031.9 927 62.2
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 3.8e-299 1031.6 903 64.0
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.5e-298 1028.9 925 62.3
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 2.7e-297 1025.4 935 61.9
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 1.0e-296 1023.5 908 63.1
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 5.1e-296 1021.1 948 61.1
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 2.8e-294 1015.4 926 61.7
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 1.1e-293 1013.4 988 59.1
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 1.2e-292 1010.0 899 63.6
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 2.0e-292 1009.2 925 61.3
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 1.4e-290 1003.0 900 62.2
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 1.2e-289 1000.0 901 61.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 2.3e-288 995.7 904 61.7
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 3.0e-288 995.3 917 60.9
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 1.1e-287 993.4 919 61.6
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 5.5e-282 974.5 964 58.7
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 3.7e-278 961.8 981 54.5
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 2.2e-275 952.6 631 76.9
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 9.1e-269 930.6 665 71.4
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 2.2e-267 926.0 909 58.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.2e-266 921.0 895 58.8
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 3.5e-260 902.1 885 57.9
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 5.0e-259 898.3 824 62.6
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 1.9e-242 843.2 887 52.1
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 4.9e-230 802.0 865 53.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 1.6e-228 797.0 509 73.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 5.0e-227 792.0 513 72.9
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 1.2e-223 780.8 930 53.8
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 2.6e-223 779.6 894 50.7
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 1.1e-221 774.2 946 49.0
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 1.2e-220 770.8 894 53.6
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 4.9e-206 722.2 861 49.8
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 2.7e-180 636.7 374 80.7
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.3e-162 576.6 664 42.6
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 1.3e-150 538.1 597 59.1
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 3.1e-144 516.9 662 53.6
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 5.4e-128 463.0 301 70.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 1.2e-114 418.7 262 76.3
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 8.9e-107 392.5 536 52.4
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.6e-103 381.7 240 76.2
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.1e-100 371.3 214 76.2
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 4.0e-99 367.1 963 32.8
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 4.6e-79 300.4 188 78.2
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 2.1e-76 291.6 357 58.3
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 8.1e-68 263.1 152 84.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.4e-67 261.5 368 42.9
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.6e-63 248.8 153 75.8
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 9.7e-45 186.4 129 66.7
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 8.2e-44 183.3 436 38.8
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 5.2e-38 164.1 142 57.0
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.7e-33 149.1 287 47.0
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 8.8e-30 136.7 221 48.9
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 2.5e-24 118.6 83 68.7
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 4.2e-24 117.9 63 90.5
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.6e-23 115.9 61 86.9
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 1.6e-23 115.9 93 64.5
CSS0034048 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.1e-23 115.5 274 42.7
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 3.0e-22 111.7 287 38.7
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 7.5e-21 107.1 282 28.0
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 6.3e-20 104.0 256 30.1
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.8e-19 102.4 343 27.1
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.8e-17 94.7 337 25.2
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 5.5e-16 90.9 342 25.7
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 2.8e-15 88.6 51 76.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 2.8e-15 88.6 98 42.9
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 8.0e-15 87.0 201 28.9
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.2e-13 83.2 94 50.0
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-12 79.0 188 28.7
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.4e-11 76.3 204 26.5
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 3.1e-11 75.1 127 47.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 2.0e-10 72.4 44 68.2
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 2.7e-10 72.0 170 31.8
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 8.6e-09 67.0 205 25.4
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 8.6e-09 67.0 57 56.1
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 8.6e-09 67.0 68 51.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.1e-08 66.6 243 23.9
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.5e-08 66.2 95 37.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.5e-08 66.2 143 29.4
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-07 63.2 113 39.8
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.4e-06 59.7 124 32.3
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 4.0e-06 58.2 157 28.7
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 8.9e-06 57.0 44 56.8


User provided reference genes

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