Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0532 Trochodendron aralioides HOM05D007398 ORTHO05D004912 1.0e-67 260.0 135 100.0
TAR629G1636 Trochodendron aralioides HOM05D007398 ORTHO05D004912 2.3e-48 195.7 135 79.3
TAR627G0987 Trochodendron aralioides HOM05D007398 ORTHO05D004912 4.0e-48 194.9 135 80.0
Nn1g03511 Nelumbo nucifera HOM05D007398 ORTHO05D004912 2.1e-41 172.6 126 76.2
Hma1.2p1_0328F.1_g126925 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 9.2e-37 157.1 135 65.9
Hma1.2p1_0328F.1_g126930 Hydrangea macrophylla HOM05D007398 ORTHO05D004912 9.2e-37 157.1 135 65.9
Dinv39711 Davidia involucrata HOM05D007398 ORTHO05D004912 6.0e-36 154.5 124 69.4
CSS0017183 Camellia sinensis var. sinensis HOM05D007398 ORTHO05D004912 5.1e-35 151.4 137 64.2
Actinidia30523 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.9e-32 141.0 136 64.0
TWI75G1275 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 7.1e-29 131.0 133 54.9
CANSAT64G0797 Cannabis sativa HOM05D007398 ORTHO05D004912 1.2e-28 130.2 135 52.6
RcHm_v2.0_Chr2g0159281 Rosa chinensis HOM05D007398 ORTHO05D004912 2.7e-28 129.0 137 57.7
Prupe.3G217200 Prunus persica HOM05D007398 ORTHO05D004912 2.3e-27 125.9 138 56.5
MD17G1096900 Malus domestica HOM05D007398 ORTHO05D004912 5.1e-27 124.8 137 54.7
Actinidia03605 Actinidia chinensis HOM05D007398 ORTHO05D004912 6.6e-27 124.4 122 64.8
Cfa014400 Carpinus fangiana HOM05D007398 ORTHO05D004912 3.3e-26 122.1 144 52.1
Atru.chr6.3184 Acer truncatum HOM05D007398 ORTHO05D004912 4.3e-26 121.7 131 53.4
Ciclev10017196m.g Citrus clementina HOM05D007398 ORTHO05D004912 5.6e-26 121.3 129 52.7
Haze_12865 Corylus avellana HOM05D007398 ORTHO05D004912 5.6e-26 121.3 145 51.0
FAN05G1963 Fragaria x ananassa HOM05D007398 ORTHO05D004912 9.6e-26 120.6 138 55.8
QL08p033081 Quercus lobata HOM05D007398 ORTHO05D004912 9.6e-26 120.6 144 52.8
FvH4_6g43180 Fragaria vesca HOM05D007398 ORTHO05D004912 1.3e-25 120.2 138 55.1
FAN02G4350 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-25 120.2 138 55.8
FAN14G0586 Fragaria x ananassa HOM05D007398 ORTHO05D004912 1.3e-25 120.2 138 55.1
Atru.chr6.3183 Acer truncatum HOM05D007398 ORTHO05D004912 2.8e-25 119.0 131 51.9
FAN09G1954 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.8e-25 118.2 138 54.3
FAN10G4171 Fragaria x ananassa HOM05D007398 ORTHO05D004912 4.8e-25 118.2 138 54.3
MD09G1108900 Malus domestica HOM05D007398 ORTHO05D004912 1.8e-24 116.3 137 53.3
CiPaw.03G160000 Carya illinoinensis HOM05D007398 ORTHO05D004912 1.2e-23 113.6 143 49.0
TWI18G0787 Tripterygium wilfordii HOM05D007398 ORTHO05D004912 1.5e-23 113.2 136 50.0
PSO541G0095 Papaver somniferum HOM05D007398 ORTHO05D004912 7.6e-23 110.9 148 50.7
Lsat_1_v5_gn_7_92201 Lactuca sativa HOM05D007398 ORTHO05D004912 1.7e-22 109.8 146 46.6
Aqoxy1G02145 Aquilegia oxysepala HOM05D007398 ORTHO05D004912 4.9e-22 108.2 139 51.8
Manes.13G070200 Manihot esculenta HOM05D007398 ORTHO05D004912 1.9e-21 106.3 126 50.8
Thecc.02G314700 Theobroma cacao HOM05D007398 ORTHO05D004912 1.9e-21 106.3 131 50.4
Gohir.A12G157600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.6e-20 103.2 131 48.1
TPR.G4189 Trifolium pratense HOM05D007398 ORTHO05D004912 1.6e-20 103.2 104 55.8
MBI02_g21879_MAGBIO Magnolia biondii HOM05D007398 ORTHO05D004912 2.1e-20 102.8 122 51.6
Duzib251G0280 Durio zibethinus HOM05D007398 ORTHO05D004912 3.5e-20 102.1 131 48.1
QL07p015665 Quercus lobata HOM05D007398 ORTHO05D004912 3.5e-20 102.1 137 50.4
Ca_01601_v3 Cicer arietinum L. HOM05D007398 ORTHO05D004912 6.0e-20 101.3 116 50.9
Gorai.008G173500 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.0e-19 100.5 131 47.3
Duzib248G0799 Durio zibethinus HOM05D007398 ORTHO05D004912 1.3e-19 100.1 131 48.9
VMungo1080G0246 Vigna mungo HOM05D007398 ORTHO05D004912 1.3e-19 100.1 133 49.6
arahy.Tifrunner.gnm1.ann1.TIC55L Arachis hypogaea HOM05D007398 ORTHO05D004912 5.1e-19 98.2 135 45.9
Phvul.005G115200 Phaseolus vulgaris HOM05D007398 ORTHO05D004912 5.1e-19 98.2 134 48.5
COL.COLO4_27711 Corchorus olitorius HOM05D007398 ORTHO05D004912 6.7e-19 97.8 132 45.5
Glyma.13G308800 Glycine max HOM05D007398 ORTHO05D004912 6.7e-19 97.8 137 50.4
Gohir.D12G159800 Gossypium hirsutum HOM05D007398 ORTHO05D004912 8.7e-19 97.4 131 46.6
Cpa.g.sc12.298 Carica papaya HOM05D007398 ORTHO05D004912 1.5e-18 96.7 137 43.8
Lsat_1_v5_gn_9_106500 Lactuca sativa HOM05D007398 ORTHO05D004912 1.9e-18 96.3 142 43.0
Psat5g264000 Pisum sativum HOM05D007398 ORTHO05D004912 2.5e-18 95.9 108 51.9
Medtr2g088320 Medicago truncatula HOM05D007398 ORTHO05D004912 3.3e-18 95.5 115 47.0
ECA236G3422 Erigeron canadensis HOM05D007398 ORTHO05D004912 7.4e-18 94.4 142 47.2
Manes.15G071300 Manihot esculenta HOM05D007398 ORTHO05D004912 9.6e-18 94.0 129 47.3
Rhsim06G0162600 Rhododendron simsii HOM05D007398 ORTHO05D004912 1.6e-17 93.2 138 45.7
arahy.Tifrunner.gnm1.ann1.X0QM4L Arachis hypogaea HOM05D007398 ORTHO05D004912 3.6e-17 92.0 139 43.9
MELO3C018817.2 Cucumis melo HOM05D007398 ORTHO05D004912 4.8e-17 91.7 127 47.2
ClCG02G008700 Citrullus lanatus HOM05D007398 ORTHO05D004912 6.2e-17 91.3 131 43.5
ClCG00G003290 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.1e-17 90.9 127 46.5
ClCG02G001930 Citrullus lanatus HOM05D007398 ORTHO05D004912 8.1e-17 90.9 127 46.5
Sed0010410 Sechium edule HOM05D007398 ORTHO05D004912 1.4e-16 90.1 129 47.3
Lalb_Chr19g0135871 Lupinus albus HOM05D007398 ORTHO05D004912 2.4e-16 89.4 123 41.5
Glyma.12G193700 Glycine max HOM05D007398 ORTHO05D004912 6.9e-16 87.8 128 48.4
HanXRQChr16g0504931 Helianthus annuus HOM05D007398 ORTHO05D004912 6.9e-16 87.8 141 44.7
Gohir.A04G144600 Gossypium hirsutum HOM05D007398 ORTHO05D004912 9.0e-16 87.4 131 43.5
Manes.03G130000 Manihot esculenta HOM05D007398 ORTHO05D004912 5.8e-15 84.7 127 44.1
Eucgr.K00797 Eucalyptus grandis HOM05D007398 ORTHO05D004912 7.6e-15 84.3 124 43.5
CsaV3_7G003580 Cucumis sativus L. HOM05D007398 ORTHO05D004912 1.3e-14 83.6 127 44.9
THA.LOC104813425 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 1.3e-14 83.6 133 43.6
Sed0017095 Sechium edule HOM05D007398 ORTHO05D004912 1.7e-14 83.2 132 42.4
Oeu041920.1 Olea europaea HOM05D007398 ORTHO05D004912 4.9e-14 81.6 127 44.9
Cc05_g04620 Coffea canephora HOM05D007398 ORTHO05D004912 6.4e-14 81.3 130 46.2
Haze_06802 Corylus avellana HOM05D061810 ORTHO05D004912 8.4e-14 80.9 99 48.5
Sed0017131 Sechium edule HOM05D007398 ORTHO05D004912 8.4e-14 80.9 126 43.7
AT5G54970 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 1.1e-13 80.5 100 46.0
Gohir.D04G189100 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.1e-13 80.5 131 42.0
Gorai.012G184400 Gossypium raimondii HOM05D007398 ORTHO05D004912 1.4e-13 80.1 131 42.7
Sed0025347 Sechium edule HOM05D007398 ORTHO05D004912 1.9e-13 79.7 131 38.9
HanXRQChr03g0069481 Helianthus annuus HOM05D007398 ORTHO05D004912 2.4e-13 79.3 129 45.0
BcaC01g06332 Brassica carinata HOM05D009587 ORTHO05D004912 5.5e-13 78.2 117 41.0
Sp6g16920 Schrenkiella parvula HOM05D009587 ORTHO05D004912 7.1e-13 77.8 136 37.5
THA.LOC104817668 Tarenaya hassleriana HOM05D009587 ORTHO05D004912 9.3e-13 77.4 134 41.8
AL8G30440 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.7e-12 75.9 133 37.6
Thhalv10015018m.g Eutrema salsugineum HOM05D009587 ORTHO05D004912 4.6e-12 75.1 129 39.5
CDE01G0169 Ceratophyllum demersum HOM05D001264 ORTHO05D001167 7.9e-12 74.3 120 46.7
QL05p073125 Quercus lobata HOM05D007398 ORTHO05D004912 1.0e-11 73.9 95 48.4
Carub.0008s1526 Capsella rubella HOM05D009587 ORTHO05D004912 2.3e-11 72.8 132 37.1
Lalb_Chr24g0393181 Lupinus albus HOM05D007398 ORTHO05D004912 5.1e-11 71.6 123 45.5
PGR083G1220 Punica granatum HOM05D007398 ORTHO05D004912 5.1e-11 71.6 117 45.3
QL05p073115 Quercus lobata HOM05D007398 ORTHO05D004912 8.7e-11 70.9 95 47.4
ATR0794G061 Amborella trichopoda HOM05D007398 ORTHO05D004912 1.1e-10 70.5 144 34.7
ECA240G1365 Erigeron canadensis HOM05D007398 ORTHO05D004912 1.5e-10 70.1 87 48.3
BraA03t10733Z Brassica rapa HOM05D009587 ORTHO05D004912 1.9e-10 69.7 116 37.9
CARHR268310 Cardamine hirsuta HOM05D009587 ORTHO05D004912 1.9e-10 69.7 134 35.8
Gorai.002G089400 Gossypium raimondii HOM05D007398 ORTHO05D004912 4.3e-10 68.6 148 37.2
SEGI_01426 Sequoiadendron giganteum HOM05D007398 ORTHO05D004912 4.3e-10 68.6 142 39.4
CARHR234560 Cardamine hirsuta HOM05D009587 ORTHO05D004912 5.6e-10 68.2 135 37.8
Gohir.A01G080300 Gossypium hirsutum HOM05D007398 ORTHO05D004912 5.6e-10 68.2 147 38.1
Migut.H01572 Erythranthe guttata HOM05D011575 ORTHO05D004912 9.6e-10 67.4 109 42.2
Aa31LG3G10880 Aethionema arabicum HOM05D009587 ORTHO05D004912 1.3e-09 67.0 122 36.1
Gohir.D01G067500 Gossypium hirsutum HOM05D007398 ORTHO05D004912 1.6e-09 66.6 148 36.5
AL7G25880 Arabidopsis lyrata HOM05D009587 ORTHO05D004912 2.8e-09 65.9 99 42.4
Ah.04g165930 Amaranthus hybridus HOM05D007398 ORTHO05D004912 3.7e-09 65.5 135 41.5
AT4G26960 Arabidopsis thaliana HOM05D009587 ORTHO05D004912 3.7e-09 65.5 133 38.3
Lj4g0016348 Lotus japonicus HOM05D007398 ORTHO05D004912 3.7e-09 65.5 101 40.6
Thecc.07G035100 Theobroma cacao HOM05D007398 ORTHO05D004912 3.7e-09 65.5 126 38.9
A03p14360 Brassica napus HOM05D009587 ORTHO05D004912 4.8e-09 65.1 117 38.5
C08p10050 Brassica napus HOM05D009587 ORTHO05D004912 4.8e-09 65.1 136 36.0
BolC8t48684H Brassica oleracea HOM05D009587 ORTHO05D004912 4.8e-09 65.1 136 36.0
Carub.0007s1391 Capsella rubella HOM05D009587 ORTHO05D004912 4.8e-09 65.1 138 37.0
Duzib213G1052 Durio zibethinus HOM05D007398 ORTHO05D004912 4.8e-09 65.1 108 41.7
Sp7g24900 Schrenkiella parvula HOM05D009587 ORTHO05D004912 4.8e-09 65.1 130 39.2
SalBow8G3401 Salvia bowleyana HOM05D011575 ORTHO05D004912 6.2e-09 64.7 86 46.5
BcaC07g38259 Brassica carinata HOM05D009587 ORTHO05D004912 8.2e-09 64.3 136 36.0
C03p16740 Brassica napus HOM05D009587 ORTHO05D004912 1.4e-08 63.5 117 38.5
BolC3t14094H Brassica oleracea HOM05D009587 ORTHO05D004912 2.4e-08 62.8 117 37.6
Sc16g0005970 Simmondsia chinensis HOM05D007398 ORTHO05D004912 2.4e-08 62.8 128 42.2
BcaB01g04338 Brassica carinata HOM05D009587 ORTHO05D004912 3.1e-08 62.4 116 36.2
Migut.M01320 Erythranthe guttata HOM05D011575 ORTHO05D004912 3.1e-08 62.4 106 39.6
RcHm_v2.0_Chr5g0002951 Rosa chinensis HOM05D011727 ORTHO05D004912 3.1e-08 62.4 107 43.9
Oeu002741.1 Olea europaea HOM05D011575 ORTHO05D004912 5.3e-08 61.6 112 39.3
SGA_v2.0_scaffold7G03838 Striga asiatica HOM05D011575 ORTHO05D004912 5.3e-08 61.6 85 48.2
MSTRG.7209 Avicennia marina HOM05D011575 ORTHO05D004912 9.0e-08 60.8 106 41.5
BcaB03g12516 Brassica carinata HOM05D009587 ORTHO05D004912 1.2e-07 60.5 136 33.1
Potri.006G052300 Populus trichocarpa HOM05D007398 ORTHO05D004912 1.5e-07 60.1 123 39.8
Aa31LG5G12020 Aethionema arabicum HOM05D009587 ORTHO05D004912 4.5e-07 58.5 101 37.6
Lj3g0008615 Lotus japonicus HOM05D007398 ORTHO05D004912 4.5e-07 58.5 121 36.4
Zm00001eb273730 Zea mays HOM05D007398 ORTHO05D004912 4.5e-07 58.5 142 36.6
AUR62015784 Chenopodium quinoa HOM05D007398 ORTHO05D004912 5.8e-07 58.2 118 39.0
FAN21G2105 Fragaria x ananassa HOM05D011727 ORTHO05D004912 5.8e-07 58.2 96 49.0
BraA08t34019Z Brassica rapa HOM05D009587 ORTHO05D004912 1.0e-06 57.4 138 36.2
FAN25G2989 Fragaria x ananassa HOM05D011727 ORTHO05D004912 1.0e-06 57.4 96 49.0
PGSC0003DMG400016452 Solanum tuberosum HOM05D011575 ORTHO05D004912 1.3e-06 57.0 98 41.8
unitig_744.g24521 Utricularia gibba HOM05D011575 ORTHO05D004912 1.3e-06 57.0 101 42.6
ClCG03G014620 Citrullus lanatus HOM05D032147 ORTHO05D034646 1.7e-06 56.6 121 35.5
A08p20650 Brassica napus HOM05D009587 ORTHO05D004912 2.2e-06 56.2 138 34.8
AUR62020433 Chenopodium quinoa HOM05D007398 ORTHO05D004912 2.2e-06 56.2 118 39.0
PGSC0003DMG400016451 Solanum tuberosum HOM05D011575 ORTHO05D004912 2.2e-06 56.2 91 45.1
FvH4_3g02050 Fragaria vesca HOM05D011727 ORTHO05D004912 2.9e-06 55.8 96 47.9
SGA_v2.0_scaffold4G01914 Striga asiatica HOM05D011575 ORTHO05D004912 2.9e-06 55.8 107 41.1
VMungo0647G2151 Vigna mungo HOM05D011727 ORTHO05D004912 8.4e-06 54.3 104 36.5


User provided reference genes

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