Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.4e-116 423.7 210 100.0
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 2.0e-14 85.1 82 62.2
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 2.0e-14 85.1 80 62.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 1.0e-13 82.8 82 59.8
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 2.9e-13 81.3 80 61.2
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.8e-13 80.9 45 86.7
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 5.0e-13 80.5 45 86.7
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.5e-12 79.0 45 84.4
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 1.5e-12 79.0 82 53.7
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 1.9e-12 78.6 79 57.0
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 1.9e-12 78.6 82 56.1
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.9e-12 78.6 45 84.4
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.9e-12 78.6 45 84.4
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 2.5e-12 78.2 45 84.4
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 3.3e-12 77.8 48 72.9
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 4.2e-12 77.4 45 82.2
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 4.2e-12 77.4 82 53.7
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 7.2e-12 76.6 82 52.4
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 7.2e-12 76.6 46 78.3
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 9.5e-12 76.3 80 65.0
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 9.5e-12 76.3 80 56.2
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.2e-11 75.9 80 62.5
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 1.6e-11 75.5 78 53.8
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.6e-11 75.5 45 77.8
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 2.1e-11 75.1 43 83.7
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 2.1e-11 75.1 43 83.7
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 2.1e-11 75.1 82 59.8
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 2.8e-11 74.7 80 66.2
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 2.8e-11 74.7 46 76.1
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 2.8e-11 74.7 45 77.8
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 3.6e-11 74.3 82 51.2
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 4.7e-11 73.9 81 54.3
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 6.1e-11 73.6 43 81.4
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 6.1e-11 73.6 47 76.6
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 6.1e-11 73.6 80 52.5
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 6.1e-11 73.6 43 79.1
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 6.1e-11 73.6 81 53.1
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 8.0e-11 73.2 80 51.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 8.0e-11 73.2 80 51.2
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 1.0e-10 72.8 45 73.3
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.0e-10 72.8 45 68.9
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.4e-10 72.4 82 51.2
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 1.4e-10 72.4 48 68.8
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.4e-10 72.4 55 63.6
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 1.8e-10 72.0 43 76.7
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.8e-10 72.0 76 53.9
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.8e-10 72.0 79 53.2
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.3e-10 71.6 81 50.6
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 2.3e-10 71.6 43 79.1
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 3.0e-10 71.2 45 73.3
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 3.0e-10 71.2 47 74.5
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 3.0e-10 71.2 45 71.1
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 3.0e-10 71.2 45 73.3
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.0e-10 71.2 79 50.6
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 3.0e-10 71.2 45 68.9
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 4.0e-10 70.9 43 74.4
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.0e-10 70.9 79 51.9
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 5.2e-10 70.5 47 72.3
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 5.2e-10 70.5 75 58.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 5.2e-10 70.5 45 71.1
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 5.2e-10 70.5 80 50.0
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 5.2e-10 70.5 43 72.1
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 5.2e-10 70.5 48 66.7
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 6.8e-10 70.1 43 79.1
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 6.8e-10 70.1 43 76.7
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 6.8e-10 70.1 47 72.3
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 6.8e-10 70.1 47 72.3
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 6.8e-10 70.1 80 51.2
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 6.8e-10 70.1 80 51.2
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 8.9e-10 69.7 43 76.7
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 8.9e-10 69.7 45 71.1
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 8.9e-10 69.7 80 51.2
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 8.9e-10 69.7 43 76.7
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 8.9e-10 69.7 80 51.2
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 8.9e-10 69.7 46 67.4
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 1.2e-09 69.3 82 48.8
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 1.2e-09 69.3 43 76.7
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 1.5e-09 68.9 50 62.0
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.5e-09 68.9 45 71.1
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.0e-09 68.6 47 68.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 2.0e-09 68.6 45 66.7
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.0e-09 68.6 74 52.7
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 2.0e-09 68.6 43 76.7
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 3.4e-09 67.8 43 69.8
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 4.4e-09 67.4 43 72.1
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 4.4e-09 67.4 43 72.1
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 4.4e-09 67.4 80 62.5
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 4.4e-09 67.4 45 71.1
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 4.4e-09 67.4 45 71.1
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 4.4e-09 67.4 45 64.4
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 5.7e-09 67.0 78 48.7
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 5.7e-09 67.0 79 46.8
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 7.5e-09 66.6 80 50.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 9.8e-09 66.2 45 68.9
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.3e-08 65.9 46 58.7
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 1.7e-08 65.5 80 47.5
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.8e-08 64.7 46 60.9
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 2.8e-08 64.7 46 58.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 3.7e-08 64.3 43 65.1
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 3.7e-08 64.3 43 65.1
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 4.9e-08 63.9 39 69.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 6.3e-08 63.5 79 48.1
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 1.1e-07 62.8 43 62.8
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 1.1e-07 62.8 80 42.5
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 1.1e-07 62.8 82 41.5
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 1.1e-07 62.8 43 67.4
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 1.1e-07 62.8 80 42.5
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.8e-07 62.0 45 60.0
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 1.8e-07 62.0 45 60.0
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 1.8e-07 62.0 78 46.2
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 2.4e-07 61.6 46 58.7
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 3.1e-07 61.2 45 60.0
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.1e-07 61.2 76 61.8
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 5.4e-07 60.5 37 67.6
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.4e-07 60.5 46 54.3
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 7.0e-07 60.1 46 54.3
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 7.0e-07 60.1 43 60.5
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 1.2e-06 59.3 40 72.5
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.0e-06 58.5 75 46.7


User provided reference genes

Program Settings