Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 6.4e-51 203.8 100 100.0
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.8e-46 188.3 100 90.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 8.9e-45 183.3 100 87.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.2e-43 178.7 100 83.0
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 2.2e-43 178.7 100 83.0
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 2.9e-43 178.3 100 84.0
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 4.9e-43 177.6 100 81.0
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 6.4e-43 177.2 100 81.0
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 6.4e-43 177.2 100 81.0
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 6.4e-43 177.2 99 81.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.1e-42 176.4 100 81.0
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.9e-42 175.6 99 81.8
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.9e-42 175.6 99 82.8
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.4e-42 175.3 99 82.8
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 2.4e-42 175.3 100 80.0
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 3.2e-42 174.9 99 80.8
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 3.2e-42 174.9 100 80.0
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.1e-42 174.5 98 82.7
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 4.1e-42 174.5 97 82.5
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 4.1e-42 174.5 99 80.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 4.1e-42 174.5 97 82.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 4.1e-42 174.5 100 80.0
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.1e-42 174.5 100 80.0
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 5.4e-42 174.1 99 82.8
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 5.4e-42 174.1 99 81.8
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 5.4e-42 174.1 99 81.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 7.1e-42 173.7 99 81.8
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 7.1e-42 173.7 99 81.8
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 7.1e-42 173.7 99 80.8
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 9.2e-42 173.3 98 81.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.2e-41 172.9 100 79.0
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.2e-41 172.9 99 79.8
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.6e-41 172.6 98 79.6
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 2.1e-41 172.2 100 80.0
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 2.7e-41 171.8 99 78.8
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.5e-41 171.4 100 78.0
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.5e-41 171.4 100 78.0
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.5e-41 171.4 100 78.0
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.5e-41 171.4 99 79.8
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 4.6e-41 171.0 100 82.0
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 4.6e-41 171.0 100 79.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 4.6e-41 171.0 100 79.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 6.0e-41 170.6 100 78.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 7.8e-41 170.2 100 78.0
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 7.8e-41 170.2 100 77.0
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 7.8e-41 170.2 100 79.0
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 7.8e-41 170.2 99 79.8
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 7.8e-41 170.2 100 78.0
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 77.0
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 79.0
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 1.0e-40 169.9 97 79.4
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.0e-40 169.9 98 80.6
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 77.0
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 1.0e-40 169.9 100 77.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 1.3e-40 169.5 100 81.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.3e-40 169.5 100 78.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.7e-40 169.1 100 77.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.7e-40 169.1 100 75.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 2.3e-40 168.7 100 78.0
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 2.3e-40 168.7 100 77.0
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-40 168.7 100 77.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 3.0e-40 168.3 100 77.0
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.9e-40 167.9 99 76.8
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 3.9e-40 167.9 99 79.8
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.9e-40 167.9 100 76.0
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 6.6e-40 167.2 100 76.0
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 6.6e-40 167.2 100 75.0
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 8.6e-40 166.8 99 78.8
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.6e-40 166.8 100 77.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.6e-40 166.8 100 77.0
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 8.6e-40 166.8 100 77.0
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 8.6e-40 166.8 100 75.0
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.1e-39 166.4 100 76.0
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 2.5e-39 165.2 100 75.0
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 3.3e-39 164.9 97 77.3
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.3e-39 164.9 99 74.7
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 3.3e-39 164.9 98 73.5
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 3.3e-39 164.9 100 72.0
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 4.3e-39 164.5 100 72.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 4.3e-39 164.5 88 86.4
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 4.3e-39 164.5 100 75.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 7.3e-39 163.7 100 74.0
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 7.3e-39 163.7 98 73.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 9.5e-39 163.3 99 72.7
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 1.6e-38 162.5 100 74.0
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 2.1e-38 162.2 98 71.4
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 8.1e-38 160.2 101 75.2
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.1e-37 159.8 99 73.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.4e-37 159.5 99 72.7
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-37 159.5 99 72.7
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-37 159.5 99 73.7
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.4e-37 159.5 99 73.7
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.4e-37 159.5 99 72.7
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.4e-37 159.5 100 73.0
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.4e-37 159.5 97 74.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 2.4e-37 158.7 99 72.7
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 3.1e-37 158.3 100 72.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 3.1e-37 158.3 100 73.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 3.1e-37 158.3 100 72.0
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 3.1e-37 158.3 92 78.3
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 4.0e-37 157.9 99 71.7
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 4.0e-37 157.9 99 71.7
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 5.2e-37 157.5 100 74.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 6.8e-37 157.1 99 70.7
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 6.8e-37 157.1 99 72.7
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 6.8e-37 157.1 99 72.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 6.8e-37 157.1 99 70.7
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 6.8e-37 157.1 101 73.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 8.9e-37 156.8 99 70.7
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.9e-37 156.8 94 75.5
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 8.9e-37 156.8 97 73.2
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.2e-36 156.4 99 69.7
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 1.5e-36 156.0 99 70.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 2.0e-36 155.6 98 72.4
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.0e-36 155.6 99 70.7
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.6e-36 155.2 99 71.7
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.3e-35 152.9 99 71.7
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.2e-35 152.1 98 72.4
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 4.8e-30 134.4 87 71.3
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 7.6e-28 127.1 98 56.1
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 7.6e-28 127.1 88 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 8.4e-27 123.6 94 58.5
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 4.6e-25 117.9 98 54.1
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.0e-24 115.2 95 54.7
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.5e-23 112.1 70 68.6
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 4.3e-23 111.3 96 52.1
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.8e-22 107.8 69 73.9
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 4.0e-21 104.8 72 65.3
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 4.0e-21 104.8 72 65.3
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 4.0e-21 104.8 72 65.3
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 4.0e-21 104.8 72 65.3
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 5.3e-21 104.4 69 66.7
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 9.0e-21 103.6 99 55.6
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.5e-20 102.8 71 64.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.4e-20 101.7 64 67.2
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.4e-20 101.7 64 67.2
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 3.7e-14 81.6 96 38.5
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 6.9e-13 77.4 47 74.5
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 4.5e-12 74.7 92 41.3
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.3e-11 73.2 46 69.6
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 6.5e-11 70.9 44 70.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 6.5e-11 70.9 44 70.5
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 1.2e-09 66.6 42 73.8
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.0e-08 63.5 55 56.4
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 3.9e-08 61.6 55 56.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 2.5e-07 58.9 35 74.3
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.5e-07 58.9 35 74.3
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 5.7e-07 57.8 40 65.0


User provided reference genes

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