Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 0.0e+00 1885.5 1011 100.0
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 9.0e-270 934.1 1038 55.5
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 1.9e-243 846.7 979 55.5
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.3e-228 797.3 1025 51.5
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 8.5e-228 794.7 1024 51.1
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 8.5e-228 794.7 1026 51.4
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 9.4e-227 791.2 1024 51.0
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.8e-225 786.9 978 50.8
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 9.2e-206 721.5 1028 47.7
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.5e-203 713.4 1017 48.2
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 1.6e-197 694.1 1020 47.3
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 2.7e-197 693.3 985 50.3
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 4.3e-195 686.0 960 48.2
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 2.1e-194 683.7 1020 46.4
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 3.6e-194 682.9 910 51.5
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 4.7e-194 682.6 1040 46.3
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 2.9e-191 673.3 1026 47.7
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 2.3e-188 663.7 1029 47.2
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 6.2e-186 655.6 1035 46.0
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 8.1e-186 655.2 1019 47.5
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.2e-184 651.4 1023 45.7
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 7.6e-184 648.7 1035 45.4
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.8e-183 646.4 1017 45.6
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.4e-183 645.6 1018 45.5
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 8.4e-183 645.2 1029 45.5
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.4e-182 642.5 1025 45.3
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.1e-181 640.6 1048 42.1
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.0e-180 636.7 1016 45.5
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 8.7e-180 635.2 1025 46.3
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 3.3e-179 633.3 1037 45.7
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 9.6e-179 631.7 957 45.6
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 3.6e-178 629.8 976 48.0
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 4.0e-177 626.3 1018 45.0
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.9e-174 617.5 956 44.4
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 2.8e-170 603.6 1152 41.7
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 2.4e-169 600.5 895 46.9
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.9e-163 580.9 834 48.0
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 1.1e-161 575.1 1011 41.7
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.8e-161 574.3 1031 41.3
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 2.0e-160 570.9 1048 42.9
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.9e-159 567.0 1022 42.5
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 3.8e-159 566.6 1044 41.8
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 6.5e-159 565.8 1022 41.2
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.9e-158 564.3 1026 42.5
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 7.9e-157 558.9 1021 42.2
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.0e-156 558.5 1023 39.8
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 6.7e-156 555.8 1027 41.1
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 6.3e-154 549.3 1050 42.5
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 8.2e-154 548.9 953 43.5
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.8e-153 547.7 1042 41.3
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 5.9e-152 542.7 1028 41.8
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 1.7e-151 541.2 1042 40.0
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 1.2e-149 535.0 1032 40.8
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 6.1e-149 532.7 1037 41.1
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 4.8e-146 523.1 1027 42.5
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 4.1e-145 520.0 856 44.3
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 5.9e-144 516.2 1033 41.1
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 6.5e-143 512.7 1053 40.1
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 8.5e-143 512.3 1021 41.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 2.5e-142 510.8 1103 39.7
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 3.6e-141 506.9 1030 40.2
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.3e-138 498.4 1038 40.8
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 1.8e-137 494.6 1055 39.0
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 2.4e-137 494.2 1040 39.3
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 4.1e-137 493.4 1035 39.7
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.2e-136 491.9 786 46.4
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 1.3e-135 488.4 1041 39.1
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 2.7e-133 480.7 926 41.4
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 2.3e-132 477.6 935 41.1
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 6.7e-132 476.1 1033 38.8
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 2.6e-131 474.2 1019 38.9
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 5.7e-131 473.0 1015 36.5
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.3e-130 471.9 1071 38.7
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 5.3e-129 466.5 938 40.1
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 2.3e-124 451.1 1039 35.5
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 5.7e-123 446.4 1036 36.9
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 1.8e-121 441.4 1063 38.2
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 2.4e-121 441.0 881 40.2
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 1.0e-119 435.6 1010 37.9
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.1e-118 432.2 1103 37.6
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.1e-118 432.2 959 38.8
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 4.2e-118 430.3 1036 36.4
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 4.2e-118 430.3 961 39.2
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.2e-117 428.7 1014 38.0
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 1.2e-117 428.7 1039 36.7
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 2.6e-115 421.0 1043 36.3
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.4e-113 414.5 1036 35.9
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 2.4e-113 414.5 967 35.4
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 9.1e-113 412.5 1050 36.0
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.6e-112 411.8 926 38.7
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 7.2e-110 402.9 1009 37.1
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 1.2e-109 402.1 865 38.7
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 4.7e-109 400.2 1053 35.7
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 8.3e-106 389.4 1123 34.4
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.3e-103 382.1 1058 34.5
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 4.3e-102 377.1 1032 33.9
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.5e-102 375.9 1005 34.5
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 1.1e-97 362.5 991 34.8
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 1.8e-97 361.7 1026 35.6
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 3.5e-96 357.5 981 35.4
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 3.7e-90 337.4 712 40.0
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 4.6e-88 330.5 914 33.4
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 2.3e-87 328.2 1099 33.3
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 2.3e-87 328.2 1026 34.2
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 3.0e-87 327.8 1034 33.0
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.8e-84 318.5 912 32.3
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 5.8e-83 313.5 912 33.1
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.3e-78 297.4 436 43.3
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.1e-76 291.2 428 43.2
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 4.9e-74 283.9 1035 32.6
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 6.4e-74 283.5 1013 30.0
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 8.7e-63 246.5 516 39.3
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 3.8e-58 231.1 155 77.4
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.5e-51 209.1 158 71.5
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 6.0e-48 197.2 154 66.9
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 3.7e-45 188.0 498 38.2
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 8.4e-42 176.8 301 48.2
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.2e-37 162.2 1126 26.0
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 1.6e-32 146.0 258 43.0
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 1.7e-29 136.0 159 52.8
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 8.2e-29 133.7 1062 25.0
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.4e-25 122.9 102 64.7
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.4e-25 122.9 163 45.4
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.0e-23 116.7 97 66.0
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 8.2e-21 107.1 73 68.5
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 4.1e-20 104.8 143 46.2
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 1.7e-18 99.4 224 35.3
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.1e-17 96.7 98 63.3
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 2.0e-14 85.9 60 75.0
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.6e-14 85.5 60 75.0
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.8e-12 79.3 201 35.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 7.0e-12 77.4 187 30.5
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 8.0e-08 63.9 97 50.5
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 1.8e-07 62.8 43 58.1


User provided reference genes

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