Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0262 Trochodendron aralioides HOM05D005245 ORTHO05D006388 0.0e+00 1374.4 714 100.0
TAR316G0002 Trochodendron aralioides HOM05D005245 ORTHO05D006388 2.6e-271 938.7 639 76.5
Nn1g09000 Nelumbo nucifera HOM05D005245 ORTHO05D006388 1.4e-211 740.3 652 60.1
TAR627G0756 Trochodendron aralioides HOM05D005245 ORTHO05D006388 3.8e-182 642.5 521 64.3
CSS0021355 Camellia sinensis var. sinensis HOM05D005245 ORTHO05D006388 1.8e-176 623.6 645 54.0
Dinv03891 Davidia involucrata HOM05D005245 ORTHO05D006388 4.2e-173 612.5 599 57.6
GSVIVG01020660001 Vitis vinifera HOM05D005245 ORTHO05D006388 2.3e-171 606.7 601 54.4
Haze_13315 Corylus avellana HOM05D005245 ORTHO05D006388 5.4e-168 595.5 722 48.2
Thecc.01G241800 Theobroma cacao HOM05D005245 ORTHO05D006388 4.5e-167 592.4 765 46.1
MBI06_g25721_MAGBIO Magnolia biondii HOM05D005245 ORTHO05D006388 1.8e-163 580.5 620 52.4
Dinv19977 Davidia involucrata HOM05D005245 ORTHO05D006388 8.9e-163 578.2 659 50.4
Hma1.2p1_0002F.1_g002540 Hydrangea macrophylla HOM05D005245 ORTHO05D006388 4.9e-161 572.4 766 46.7
Prupe.8G044600 Prunus persica HOM05D005245 ORTHO05D006388 7.3e-157 558.5 768 45.1
CiPaw.04G130500 Carya illinoinensis HOM05D005245 ORTHO05D006388 4.7e-156 555.8 767 43.5
Cfa014695 Carpinus fangiana HOM05D005245 ORTHO05D006388 8.9e-155 551.6 818 41.8
Duzib264G0025 Durio zibethinus HOM05D005245 ORTHO05D006388 3.4e-154 549.7 752 44.3
QL08p043062 Quercus lobata HOM05D005245 ORTHO05D006388 1.4e-152 544.3 792 42.7
Cpa.g.sc209.10 Carica papaya HOM05D005245 ORTHO05D006388 1.9e-152 543.9 721 45.8
Gohir.A10G153600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 2.4e-152 543.5 636 48.4
Gohir.D10G112600 Gossypium hirsutum HOM05D005245 ORTHO05D006388 5.4e-152 542.3 636 48.3
Gorai.011G124400 Gossypium raimondii HOM05D005245 ORTHO05D006388 9.2e-152 541.6 636 48.3
Aqoxy1G02205 Aquilegia oxysepala HOM05D005245 ORTHO05D006388 3.5e-151 539.7 644 47.7
Lj8C105T4 Lonicera japonica HOM05D005245 ORTHO05D006388 5.1e-150 535.8 645 48.4
MD17G1128800 Malus domestica HOM05D005245 ORTHO05D006388 1.5e-149 534.3 703 46.1
Actinidia39337 Actinidia chinensis HOM05D005245 ORTHO05D006388 1.6e-148 530.8 838 42.7
MD09G1139300 Malus domestica HOM05D005245 ORTHO05D006388 2.7e-143 513.5 792 42.7
Manes.13G138100 Manihot esculenta HOM05D005245 ORTHO05D006388 1.3e-142 511.1 703 45.8
Potri.013G119700 Populus trichocarpa HOM05D005245 ORTHO05D006388 7.3e-141 505.4 656 47.9
TWI59G0121 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 8.9e-139 498.4 633 47.1
Sabra19G0105000 Salix brachista HOM05D005245 ORTHO05D006388 2.6e-138 496.9 697 45.5
Potri.019G091700 Populus trichocarpa HOM05D005245 ORTHO05D006388 9.9e-138 495.0 779 42.2
TWI23G1119 Tripterygium wilfordii HOM05D005245 ORTHO05D006388 3.2e-136 490.0 628 46.5
Peaxi162Scf00189g00017 Petunia axillaris HOM05D005245 ORTHO05D006388 2.1e-135 487.3 741 42.5
Nitab4.5_0002629g0110 Nicotiana tabacum HOM05D005245 ORTHO05D006388 4.6e-135 486.1 643 44.8
ClCG02G018020 Citrullus lanatus HOM05D005245 ORTHO05D006388 1.5e-133 481.1 794 41.2
Rhsim04G0072600 Rhododendron simsii HOM05D005245 ORTHO05D006388 1.9e-133 480.7 825 38.7
PGSC0003DMG400009404 Solanum tuberosum HOM05D005245 ORTHO05D006388 1.1e-131 474.9 678 43.5
Sc12g0003330 Simmondsia chinensis HOM05D005245 ORTHO05D006388 2.4e-131 473.8 754 39.7
Actinidia30446 Actinidia chinensis HOM05D005245 ORTHO05D006388 4.0e-131 473.0 701 43.4
CsaV3_6G015240 Cucumis sativus L. HOM05D005245 ORTHO05D006388 5.3e-131 472.6 797 40.7
Sopen07g027400 Solanum pennellii HOM05D005245 ORTHO05D006388 3.4e-130 469.9 773 40.4
Ciclev10014152m.g Citrus clementina HOM05D005245 ORTHO05D006388 1.9e-128 464.2 708 43.1
Nitab4.5_0006823g0030 Nicotiana tabacum HOM05D005245 ORTHO05D006388 3.2e-128 463.4 654 43.7
RcHm_v2.0_Chr2g0128861 Rosa chinensis HOM05D005245 ORTHO05D006388 1.6e-127 461.1 768 40.0
FAN09G0613 Fragaria x ananassa HOM05D005245 ORTHO05D006388 1.3e-126 458.0 771 39.7
arahy.Tifrunner.gnm1.ann1.BT5S0A Arachis hypogaea HOM05D005245 ORTHO05D006388 5.1e-126 456.1 684 41.4
CANSAT64G0642 Cannabis sativa HOM05D005245 ORTHO05D006388 1.9e-125 454.1 838 39.5
arahy.Tifrunner.gnm1.ann1.MS8YUN Arachis hypogaea HOM05D005245 ORTHO05D006388 2.8e-124 450.3 780 39.0
FvH4_6g27000 Fragaria vesca HOM05D005245 ORTHO05D006388 6.2e-124 449.1 769 39.4
PGR042G2390 Punica granatum HOM05D005245 ORTHO05D006388 1.4e-123 448.0 810 37.4
THA.LOC104822691 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.4e-123 448.0 622 42.3
PSO384G4553 Papaver somniferum HOM05D005245 ORTHO05D006388 4.9e-121 439.5 750 39.3
TPR.G14943 Trifolium pratense HOM05D005245 ORTHO05D006388 1.1e-120 438.3 740 39.3
Psat7g166560 Pisum sativum HOM05D005245 ORTHO05D006388 7.1e-120 435.6 708 39.8
CAN.G1543.11 Capsicum annuum HOM05D005245 ORTHO05D006388 7.9e-119 432.2 751 38.9
Lalb_Chr19g0134981 Lupinus albus HOM05D005245 ORTHO05D006388 7.9e-119 432.2 768 37.9
Sed0004663 Sechium edule HOM05D005245 ORTHO05D006388 1.3e-118 431.4 779 37.9
Eucgr.A01888 Eucalyptus grandis HOM05D005245 ORTHO05D006388 1.8e-118 431.0 742 37.2
Atru.chr6.2836 Acer truncatum HOM05D005245 ORTHO05D006388 2.3e-118 430.6 860 35.9
RcHm_v2.0_Chr5g0053351 Rosa chinensis HOM05D005245 ORTHO05D006388 2.3e-118 430.6 728 39.1
Oeu031086.1 Olea europaea HOM05D005245 ORTHO05D006388 3.9e-118 429.9 634 41.5
Ca_18900_v3 Cicer arietinum L. HOM05D005245 ORTHO05D006388 6.7e-118 429.1 682 40.9
Lalb_Chr03g0029811 Lupinus albus HOM05D005245 ORTHO05D006388 6.7e-118 429.1 692 40.2
PSO339G1987 Papaver somniferum HOM05D005245 ORTHO05D006388 6.7e-118 429.1 758 38.3
CDE10G0023 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 1.9e-117 427.6 628 43.0
VMungo1127G0185 Vigna mungo HOM05D005245 ORTHO05D006388 3.3e-117 426.8 663 40.6
Lalb_Chr01g0005921 Lupinus albus HOM05D005245 ORTHO05D006388 9.6e-117 425.2 711 39.2
Migut.M00189 Erythranthe guttata HOM05D005245 ORTHO05D006388 2.8e-116 423.7 655 40.5
Solyc07g053440.4 Solanum lycopersicum HOM05D005245 ORTHO05D006388 2.8e-116 423.7 760 38.0
AL5G39800 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 1.4e-115 421.4 647 41.0
CARHR137420 Cardamine hirsuta HOM05D005245 ORTHO05D006388 2.4e-115 420.6 612 42.0
Phvul.011G116900 Phaseolus vulgaris HOM05D005245 ORTHO05D006388 3.1e-115 420.2 755 38.4
Hund00957 Selenicereus undatus HOM05D005245 ORTHO05D006388 3.8e-113 413.3 860 34.3
Lj3g0023683 Lotus japonicus HOM05D005245 ORTHO05D006388 1.1e-112 411.8 790 37.6
Oeu000569.1 Olea europaea HOM05D005245 ORTHO05D006388 2.5e-112 410.6 616 41.4
CARHR168460 Cardamine hirsuta HOM05D005245 ORTHO05D006388 1.2e-111 408.3 661 39.9
AL4G40790 Arabidopsis lyrata HOM05D005245 ORTHO05D006388 6.0e-111 406.0 652 39.6
AT3G58110 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 7.9e-111 405.6 648 40.1
Oeu036088.3 Olea europaea HOM05D005245 ORTHO05D006388 1.8e-110 404.4 755 37.4
SalBow7G1067 Salvia bowleyana HOM05D005245 ORTHO05D006388 3.0e-110 403.7 704 37.2
EL10Ac9g20856 Beta vulgaris HOM05D005245 ORTHO05D006388 6.7e-110 402.5 707 37.1
Carub.0005s2496 Capsella rubella HOM05D005245 ORTHO05D006388 8.7e-110 402.1 641 40.6
Thhalv10005785m.g Eutrema salsugineum HOM05D005245 ORTHO05D006388 9.0e-107 392.1 653 38.9
Medtr4g079510 Medicago truncatula HOM05D005245 ORTHO05D006388 1.2e-106 391.7 671 37.6
AT2G42370 Arabidopsis thaliana HOM05D005245 ORTHO05D006388 3.4e-106 390.2 606 40.6
Sp5g04610 Schrenkiella parvula HOM05D005245 ORTHO05D006388 1.1e-104 385.2 769 36.0
Lsat_1_v5_gn_8_137601 Lactuca sativa HOM05D005245 ORTHO05D006388 3.2e-104 383.6 683 37.9
FvH4_3g11260 Fragaria vesca HOM05D005245 ORTHO05D006388 4.6e-103 379.8 719 36.6
unitig_899.g15324 Utricularia gibba HOM05D005245 ORTHO05D006388 6.1e-103 379.4 639 35.8
SGA_v2.0_scaffold106G30663 Striga asiatica HOM05D005245 ORTHO05D006388 3.9e-102 376.7 670 38.1
PSO063G4059 Papaver somniferum HOM05D005245 ORTHO05D006388 7.4e-101 372.5 818 33.5
PSO782G4194 Papaver somniferum HOM05D005245 ORTHO05D006388 1.8e-99 367.9 903 32.2
AUR62024070 Chenopodium quinoa HOM05D005245 ORTHO05D006388 3.1e-99 367.1 712 34.8
Ah.01g003870 Amaranthus hybridus HOM05D005245 ORTHO05D006388 1.2e-98 365.2 778 33.7
BraA07t30041Z Brassica rapa HOM05D005245 ORTHO05D006388 2.0e-98 364.4 611 38.0
AUR62038992 Chenopodium quinoa HOM05D005245 ORTHO05D006388 2.0e-98 364.4 726 35.0
A07p23880 Brassica napus HOM05D005245 ORTHO05D006388 2.6e-98 364.0 663 36.7
C06p25110 Brassica napus HOM05D005245 ORTHO05D006388 4.5e-98 363.2 662 36.7
FAN21G3056 Fragaria x ananassa HOM05D005245 ORTHO05D006388 4.5e-98 363.2 614 40.4
BcaC08g44897 Brassica carinata HOM05D005245 ORTHO05D006388 7.7e-98 362.5 662 36.7
BolC6t37670H Brassica oleracea HOM05D005245 ORTHO05D006388 7.7e-98 362.5 662 36.7
BcaB02g07551 Brassica carinata HOM05D005245 ORTHO05D006388 1.4e-96 358.2 684 35.8
CDE10G0522 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 2.7e-95 354.0 625 38.1
HPP92_024035 Vanilla planifolia HOM05D005245 ORTHO05D006388 3.0e-94 350.5 669 37.8
Sabra13G0101100 Salix brachista HOM05D005245 ORTHO05D006388 6.9e-91 339.3 610 40.8
ECA233G0823 Erigeron canadensis HOM05D005245 ORTHO05D006388 2.9e-89 334.0 651 34.7
HanXRQChr17g0554751 Helianthus annuus HOM05D005245 ORTHO05D006388 3.8e-89 333.6 699 34.6
DCAR_006629 Daucus carota HOM05D005245 ORTHO05D006388 1.2e-82 312.0 750 31.1
HanXRQChr17g0560461 Helianthus annuus HOM05D005245 ORTHO05D006388 1.6e-82 311.6 639 36.3
DCAR_025312 Daucus carota HOM05D005245 ORTHO05D006388 1.3e-81 308.5 882 29.6
ATR0602G272 Amborella trichopoda HOM05D005245 ORTHO05D006388 2.2e-81 307.8 656 34.0
SHI10497 Sapria himalayana HOM05D005245 ORTHO05D006388 5.5e-80 303.1 723 32.5
Lalb_Chr22g0356801 Lupinus albus HOM05D005245 ORTHO05D006388 1.8e-70 271.6 705 30.6
HPP92_005198 Vanilla planifolia HOM05D005245 ORTHO05D006388 2.0e-66 258.1 627 31.3
COL.COLO4_10076 Corchorus olitorius HOM05D005245 ORTHO05D006388 1.4e-62 245.4 294 46.6
BcaB02g07550 Brassica carinata HOM05D005245 ORTHO05D006388 1.8e-62 245.0 562 33.1
MELO3C019743.2 Cucumis melo HOM05D005245 ORTHO05D006388 2.2e-60 238.0 414 38.9
COL.COLO4_23697 Corchorus olitorius HOM05D005245 ORTHO05D006388 3.7e-60 237.3 259 48.6
Glyma.06G284801 Glycine max HOM05D005245 ORTHO05D006388 1.4e-54 218.8 284 47.5
Cc05_g08020 Coffea canephora HOM05D005245 ORTHO05D006388 2.0e-53 214.9 328 41.5
CDE10G0045 Ceratophyllum demersum HOM05D005245 ORTHO05D006388 3.9e-49 200.7 187 56.1
CsaV3_3G019350 Cucumis sativus L. HOM05D005245 ORTHO05D006388 6.2e-47 193.4 259 44.8
BcaC08g44896 Brassica carinata HOM05D005245 ORTHO05D006388 6.0e-42 176.8 172 51.7
Atru.chr3.860 Acer truncatum HOM05D005245 ORTHO05D006388 1.0e-41 176.0 360 34.4
SGA_v2.0_scaffold51G18645 Striga asiatica HOM05D005245 ORTHO05D006388 1.3e-33 149.1 177 50.3
Cc02_g14370 Coffea canephora HOM05D005245 ORTHO05D006388 1.5e-32 145.6 394 30.5
Glyma.12G121100 Glycine max HOM05D005245 ORTHO05D006388 2.3e-30 138.3 145 53.1
SGA_v2.0_scaffold51G18646 Striga asiatica HOM05D005245 ORTHO05D006388 3.4e-29 134.4 361 34.1
Sabra13G0101200 Salix brachista HOM05D005245 ORTHO05D006388 3.7e-28 131.0 127 52.8
Os06g0538200 Oryza sativa ssp. japonica HOM05D005245 ORTHO05D006388 4.9e-28 130.6 826 23.5
Zm00001eb204940 Zea mays HOM05D005245 ORTHO05D006388 2.7e-26 124.8 334 32.3
Zm00001eb238770 Zea mays HOM05D005245 ORTHO05D006388 2.3e-25 121.7 418 30.1
SEGI_35055 Sequoiadendron giganteum HOM05D005245 ORTHO05D006388 3.9e-25 120.9 286 33.2
ECA233G3350 Erigeron canadensis HOM05D005245 ORTHO05D006388 8.1e-23 113.2 223 35.0
Zm00001eb238760 Zea mays HOM05D005245 ORTHO05D006388 4.3e-16 90.9 234 30.3
unitig_62.g23335 Utricularia gibba HOM05D005245 ORTHO05D006388 1.1e-14 86.3 135 37.8
RcHm_v2.0_Chr4g0423021 Rosa chinensis HOM05D005245 ORTHO05D006388 1.2e-10 72.8 74 50.0
Ah.09g225920 Amaranthus hybridus HOM05D005245 ORTHO05D006388 2.5e-08 65.1 90 42.2
THA.LOC104802250 Tarenaya hassleriana HOM05D005245 ORTHO05D006388 1.3e-07 62.8 148 33.8
FvH4_4g03480 Fragaria vesca HOM05D014995 ORTHO05D029569 2.8e-07 61.6 141 34.0
FAN12G1500 Fragaria x ananassa HOM05D005245 ORTHO05D029569 1.4e-06 59.3 61 50.8


User provided reference genes

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