Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0251 Trochodendron aralioides HOM05D002086 ORTHO05D049311 4.2e-45 184.5 106 100.0
TAR383G0088 Trochodendron aralioides HOM05D002086 ORTHO05D004968 1.5e-26 122.9 103 74.8
TAR145G0003 Trochodendron aralioides HOM05D000240 ORTHO05D001140 1.1e-19 100.1 52 90.4
Dinv40991 Davidia involucrata HOM05D002086 ORTHO05D004968 1.3e-17 93.2 105 51.4
Nn8g39828 Nelumbo nucifera HOM05D002086 ORTHO05D004968 2.2e-17 92.4 106 59.4
Nn2g12323 Nelumbo nucifera HOM05D002086 ORTHO05D004968 2.9e-17 92.0 104 50.0
Hma1.2p1_0059F.1_g032590 Hydrangea macrophylla HOM05D002086 ORTHO05D004968 1.4e-16 89.7 107 50.5
Dinv01596 Davidia involucrata HOM05D002086 ORTHO05D004968 1.9e-16 89.4 105 51.4
Dinv16456 Davidia involucrata HOM05D002086 ORTHO05D004968 5.4e-16 87.8 107 51.4
Actinidia23099 Actinidia chinensis HOM05D002086 ORTHO05D004968 1.6e-15 86.3 101 49.5
Actinidia14124 Actinidia chinensis HOM05D002086 ORTHO05D004968 1.3e-14 83.2 102 49.0
MBI15_g10897_MAGBIO Magnolia biondii HOM05D002086 ORTHO05D004968 1.7e-14 82.8 100 48.0
Actinidia22300 Actinidia chinensis HOM05D002086 ORTHO05D004968 2.3e-14 82.4 105 48.6
CSS0012509 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 3.0e-14 82.0 105 45.7
CSS0033639 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 3.0e-14 82.0 105 45.7
Nn5g26882 Nelumbo nucifera HOM05D002086 ORTHO05D049311 4.3e-13 78.2 97 59.8
GSVIVG01035894001 Vitis vinifera HOM05D002086 ORTHO05D004968 8.1e-12 73.9 104 50.0
Cpa.g.sc127.18 Carica papaya HOM05D002086 ORTHO05D004968 1.1e-11 73.6 56 66.1
QL02p019575 Quercus lobata HOM05D002086 ORTHO05D004968 1.8e-11 72.8 105 41.9
Thecc.09G017200 Theobroma cacao HOM05D002086 ORTHO05D004968 4.0e-11 71.6 55 60.0
Gohir.A05G058300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 6.8e-11 70.9 107 42.1
Gorai.009G061400 Gossypium raimondii HOM05D002086 ORTHO05D004968 6.8e-11 70.9 107 42.1
Thhalv10024943m.g Eutrema salsugineum HOM05D002086 ORTHO05D004968 8.9e-11 70.5 113 38.9
Gohir.D05G060300 Gossypium hirsutum HOM05D002086 ORTHO05D004968 2.0e-10 69.3 107 41.1
Sp7g29710 Schrenkiella parvula HOM05D002086 ORTHO05D004968 3.4e-10 68.6 54 59.3
Actinidia13192 Actinidia chinensis HOM05D002086 ORTHO05D004968 5.8e-10 67.8 60 60.0
CSS0031585 Camellia sinensis var. sinensis HOM05D002086 ORTHO05D004968 1.3e-09 66.6 55 56.4
MD15G1038300 Malus domestica HOM05D002086 ORTHO05D004968 1.3e-09 66.6 55 58.2
Duzib187G0822 Durio zibethinus HOM05D002086 ORTHO05D004968 1.7e-09 66.2 56 57.1
Atru.chr7.2533 Acer truncatum HOM05D002086 ORTHO05D004968 2.2e-09 65.9 107 52.3
AL7G20050 Arabidopsis lyrata HOM05D002086 ORTHO05D004968 2.9e-09 65.5 117 36.8
MD08G1057900 Malus domestica HOM05D002086 ORTHO05D004968 2.9e-09 65.5 119 46.2
Cfa013073 Carpinus fangiana HOM05D002086 ORTHO05D004968 3.8e-09 65.1 49 59.2
Manes.03G010200 Manihot esculenta HOM05D002086 ORTHO05D004968 3.8e-09 65.1 112 34.8
Duzib168G2069 Durio zibethinus HOM05D002086 ORTHO05D004968 4.9e-09 64.7 56 53.6
Prupe.1G392300 Prunus persica HOM05D002086 ORTHO05D004968 4.9e-09 64.7 116 40.5
Carub.0007s0865 Capsella rubella HOM05D002086 ORTHO05D004968 1.1e-08 63.5 59 52.5
RcHm_v2.0_Chr6g0299591 Rosa chinensis HOM05D002086 ORTHO05D004968 1.1e-08 63.5 55 56.4
AT4G31890 Arabidopsis thaliana HOM05D002086 ORTHO05D004968 1.4e-08 63.2 58 53.4
CiPaw.07G228900 Carya illinoinensis HOM05D002086 ORTHO05D004968 1.4e-08 63.2 104 37.5
FvH4_2g40980 Fragaria vesca HOM05D002086 ORTHO05D004968 3.2e-08 62.0 55 54.5
PSO170G0198 Papaver somniferum HOM05D002086 ORTHO05D004968 4.1e-08 61.6 47 61.7
PGSC0003DMG400000963 Solanum tuberosum HOM05D002086 ORTHO05D004968 4.1e-08 61.6 108 37.0
Haze_21431 Corylus avellana HOM05D002086 ORTHO05D004968 7.1e-08 60.8 105 41.0
FAN20G1050 Fragaria x ananassa HOM05D002086 ORTHO05D004968 7.1e-08 60.8 103 40.8
Nitab4.5_0004637g0070 Nicotiana tabacum HOM05D002086 ORTHO05D004968 7.1e-08 60.8 117 38.5
BcaNung03121 Brassica carinata HOM05D002086 ORTHO05D004968 9.2e-08 60.5 114 35.1
ClCG05G016420 Citrullus lanatus HOM05D002086 ORTHO05D004968 9.2e-08 60.5 107 40.2
FAN27G1068 Fragaria x ananassa HOM05D002086 ORTHO05D004968 1.2e-07 60.1 103 41.7
BcaC09g51980 Brassica carinata HOM05D002086 ORTHO05D004968 2.1e-07 59.3 114 35.1
Nitab4.5_0000486g0090 Nicotiana tabacum HOM05D002086 ORTHO05D004968 2.1e-07 59.3 109 36.7
arahy.Tifrunner.gnm1.ann1.LJ933N Arachis hypogaea HOM05D002086 ORTHO05D004968 4.6e-07 58.2 109 34.9
A01p06360 Brassica napus HOM05D002086 ORTHO05D004968 4.6e-07 58.2 114 35.1
BolC1t00696H Brassica oleracea HOM05D002086 ORTHO05D004968 4.6e-07 58.2 114 35.1
BraA01t00601Z Brassica rapa HOM05D002086 ORTHO05D004968 4.6e-07 58.2 114 35.1
PGR044G1726 Punica granatum HOM05D002086 ORTHO05D004968 4.6e-07 58.2 114 36.8
Aqoxy5G00905 Aquilegia oxysepala HOM05D002086 ORTHO05D004968 6.0e-07 57.8 61 50.8
CARHR239820 Cardamine hirsuta HOM05D002086 ORTHO05D004968 6.0e-07 57.8 57 47.4
arahy.Tifrunner.gnm1.ann1.1EF81S Arachis hypogaea HOM05D002086 ORTHO05D004968 7.8e-07 57.4 109 42.2
C01p07010 Brassica napus HOM05D002086 ORTHO05D004968 1.0e-06 57.0 114 35.1
ClCG08G013670 Citrullus lanatus HOM05D002086 ORTHO05D004968 1.0e-06 57.0 57 47.4
Manes.16G128100 Manihot esculenta HOM05D002086 ORTHO05D004968 1.0e-06 57.0 52 50.0
Peaxi162Scf00632g00311 Petunia axillaris HOM05D002086 ORTHO05D004968 1.0e-06 57.0 109 35.8
Solyc08g042100.3 Solanum lycopersicum HOM05D002086 ORTHO05D004968 1.0e-06 57.0 108 35.2
Sopen08g012600 Solanum pennellii HOM05D002086 ORTHO05D004968 1.0e-06 57.0 108 37.0
MELO3C016971.2 Cucumis melo HOM05D002086 ORTHO05D004968 1.3e-06 56.6 115 37.4
CsaV3_4G036680 Cucumis sativus L. HOM05D002086 ORTHO05D004968 1.3e-06 56.6 115 37.4
Sed0019085 Sechium edule HOM05D002086 ORTHO05D004968 1.3e-06 56.6 107 33.6
Ciclev10008009m.g Citrus clementina HOM05D002086 ORTHO05D004968 1.7e-06 56.2 118 37.3
Gohir.A06G101100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 1.7e-06 56.2 54 53.7
Gohir.D06G103100 Gossypium hirsutum HOM05D002086 ORTHO05D004968 2.3e-06 55.8 56 51.8
Aa31LG2G18200 Aethionema arabicum HOM05D002086 ORTHO05D004968 3.0e-06 55.5 55 50.9
CsaV3_2G032440 Cucumis sativus L. HOM05D002086 ORTHO05D004968 3.0e-06 55.5 57 47.4
PSO017G4449 Papaver somniferum HOM05D002086 ORTHO05D004968 3.0e-06 55.5 114 34.2
Rhsim02G0215800 Rhododendron simsii HOM05D002086 ORTHO05D004968 3.0e-06 55.5 46 52.2
CiPaw.08G006900 Carya illinoinensis HOM05D002086 ORTHO05D004968 6.6e-06 54.3 106 35.8
MELO3C011293.2 Cucumis melo HOM05D002086 ORTHO05D004968 6.6e-06 54.3 119 33.6
Gorai.010G118100 Gossypium raimondii HOM05D002086 ORTHO05D004968 8.6e-06 53.9 56 50.0
Lj8A736T34 Lonicera japonica HOM05D002086 ORTHO05D004968 8.6e-06 53.9 53 58.5


User provided reference genes

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