Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 6.4e-51 203.8 101 100.0
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 2.0e-23 112.5 69 82.6
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 2.5e-18 95.5 69 71.0
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 2.5e-18 95.5 69 69.6
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-17 92.8 69 65.2
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.6e-17 92.8 69 65.2
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 2.7e-17 92.0 69 65.2
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.7e-17 92.0 68 70.6
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.7e-17 92.0 69 65.2
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.6e-17 91.7 65 66.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 7.9e-17 90.5 61 73.8
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 1.8e-16 89.4 65 67.7
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.3e-16 89.0 69 66.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 3.0e-16 88.6 66 68.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.9e-16 88.2 69 62.3
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 3.9e-16 88.2 69 68.1
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 5.1e-16 87.8 69 60.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 6.7e-16 87.4 69 65.2
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 6.7e-16 87.4 69 65.2
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 6.7e-16 87.4 66 65.2
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 8.8e-16 87.0 69 63.8
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.1e-15 86.7 69 62.3
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.1e-15 86.7 69 62.3
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.1e-15 86.7 68 60.3
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.5e-15 86.3 69 63.8
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.0e-15 85.9 61 67.2
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 2.6e-15 85.5 68 66.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 3.3e-15 85.1 68 63.2
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 3.3e-15 85.1 61 67.2
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 3.3e-15 85.1 69 63.8
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 3.3e-15 85.1 66 66.7
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 4.4e-15 84.7 69 65.2
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 7.4e-15 84.0 61 70.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.4e-15 84.0 61 70.5
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 9.7e-15 83.6 69 65.2
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 9.7e-15 83.6 70 60.0
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.7e-14 82.8 60 70.0
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.7e-14 82.8 61 68.9
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.7e-14 82.8 69 65.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.7e-14 82.8 69 65.2
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.7e-14 82.8 60 68.3
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.7e-14 82.8 60 70.0
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 2.2e-14 82.4 69 63.8
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 2.8e-14 82.0 61 67.2
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 2.8e-14 82.0 69 60.9
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 3.7e-14 81.6 69 65.2
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 3.7e-14 81.6 60 68.3
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 3.7e-14 81.6 63 57.1
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 4.8e-14 81.3 65 61.5
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 6.3e-14 80.9 60 65.0
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 6.3e-14 80.9 68 60.3
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 8.2e-14 80.5 60 65.0
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 8.2e-14 80.5 60 66.7
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.1e-13 80.1 65 60.0
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 1.4e-13 79.7 65 58.5
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.4e-13 79.7 60 65.0
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.4e-13 79.7 68 54.4
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.4e-13 79.7 70 57.1
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 1.4e-13 79.7 61 65.6
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.8e-13 79.3 61 57.4
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.8e-13 79.3 69 59.4
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 1.8e-13 79.3 65 56.9
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.4e-13 79.0 68 51.5
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-13 79.0 60 65.0
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.4e-13 79.0 60 65.0
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.4e-13 79.0 66 65.2
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 3.1e-13 78.6 61 57.4
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 3.1e-13 78.6 68 57.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.1e-13 78.6 70 57.1
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 5.3e-13 77.8 74 55.4
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 5.3e-13 77.8 68 54.4
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 5.3e-13 77.8 68 54.4
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.0e-13 77.4 61 60.7
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 7.0e-13 77.4 73 57.5
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 7.0e-13 77.4 68 54.4
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 9.1e-13 77.0 61 54.1
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 1.2e-12 76.6 69 55.1
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.2e-12 76.6 69 58.0
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.6e-12 76.3 60 63.3
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 2.6e-12 75.5 61 57.4
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 2.6e-12 75.5 65 52.3
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 2.6e-12 75.5 60 58.3
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 2.6e-12 75.5 70 54.3
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.6e-12 75.5 70 54.3
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 4.5e-12 74.7 61 57.4
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 5.9e-12 74.3 70 54.3
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 7.7e-12 73.9 60 61.7
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 7.7e-12 73.9 67 58.2
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 1.0e-11 73.6 67 53.7
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 1.0e-11 73.6 59 54.2
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 1.7e-11 72.8 60 60.0
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 3.8e-11 71.6 61 57.4
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 5.0e-11 71.2 62 58.1
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 5.0e-11 71.2 58 55.2
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 6.5e-11 70.9 66 54.5
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.5e-11 70.9 67 52.2
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 8.5e-11 70.5 61 54.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.5e-10 69.7 60 60.0
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-10 68.9 59 50.8
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-10 68.9 59 50.8
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 2.5e-10 68.9 66 53.0
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.5e-10 67.8 60 58.3
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 7.2e-10 67.4 61 54.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-09 66.2 60 51.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 1.6e-09 66.2 60 51.7
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.1e-09 65.9 69 46.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 2.1e-09 65.9 60 56.7
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 2.7e-09 65.5 60 56.7
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.6e-09 65.1 60 50.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 4.7e-09 64.7 69 53.6
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 6.1e-09 64.3 69 46.4
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 6.1e-09 64.3 69 46.4
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 8.0e-09 63.9 69 46.4
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 8.0e-09 63.9 70 47.1
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 8.0e-09 63.9 70 47.1
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 8.0e-09 63.9 70 47.1
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 8.0e-09 63.9 70 47.1
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 8.0e-09 63.9 70 47.1
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 8.0e-09 63.9 60 55.0
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.0e-08 63.5 69 52.2
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 1.4e-08 63.2 60 50.0
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 1.8e-08 62.8 69 46.4
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 1.8e-08 62.8 70 45.7
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.3e-08 62.4 69 46.4
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 2.3e-08 62.4 69 44.9
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.1e-07 60.1 69 43.5
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 2.0e-07 59.3 70 48.6
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 3.3e-07 58.5 57 50.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 3.3e-07 58.5 57 50.9
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.4e-07 58.2 57 47.4
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 5.7e-07 57.8 69 42.0
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.2e-06 55.8 57 49.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 2.8e-06 55.5 52 59.6
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.7e-06 55.1 60 48.3
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 8.2e-06 53.9 56 50.0


User provided reference genes

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