Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.5e-58 228.0 112 100.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.5e-48 196.1 103 91.3
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 5.7e-48 194.1 103 91.3
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 1.4e-46 189.5 103 88.3
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.4e-46 189.5 100 89.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 9.0e-46 186.8 100 87.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 1.2e-45 186.4 100 88.0
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.0e-45 185.7 102 85.3
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 2.6e-45 185.3 100 86.0
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 2.6e-45 185.3 101 87.1
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 2.6e-45 185.3 100 87.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 5.9e-45 184.1 101 86.1
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 5.9e-45 184.1 100 87.0
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.9e-45 184.1 100 88.0
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 7.6e-45 183.7 110 81.8
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 2.2e-44 182.2 100 86.0
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 2.2e-44 182.2 100 86.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 2.9e-44 181.8 100 85.0
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.9e-44 181.8 102 84.3
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 3.8e-44 181.4 102 82.4
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 3.8e-44 181.4 100 84.0
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 5.0e-44 181.0 100 86.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 5.0e-44 181.0 100 86.0
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 5.0e-44 181.0 100 86.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 6.5e-44 180.6 100 85.0
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 6.5e-44 180.6 100 85.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.1e-43 179.9 100 85.0
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.1e-43 179.9 100 85.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 85.0
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 85.0
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 85.0
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 85.0
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 85.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 86.0
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.9e-43 179.1 100 82.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.9e-43 179.1 100 82.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.9e-43 179.1 109 81.7
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.9e-43 179.1 99 83.8
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 2.5e-43 178.7 102 80.4
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 4.2e-43 177.9 100 84.0
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 4.2e-43 177.9 100 83.0
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 4.2e-43 177.9 100 84.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 5.5e-43 177.6 100 81.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 7.2e-43 177.2 102 81.4
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 1.2e-42 176.4 113 77.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 2.1e-42 175.6 100 80.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.7e-42 175.3 99 81.8
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 2.7e-42 175.3 100 82.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 3.6e-42 174.9 102 78.4
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 3.6e-42 174.9 100 81.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 4.6e-42 174.5 100 82.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 6.1e-42 174.1 103 79.6
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.0e-41 173.3 100 81.0
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.0e-41 173.3 100 83.0
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 1.3e-41 172.9 99 80.8
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.3e-41 172.9 102 83.3
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.3e-41 172.9 100 82.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.3e-41 172.9 102 80.4
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.3e-41 172.9 100 82.0
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 2.3e-41 172.2 100 82.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 6.7e-41 170.6 100 80.0
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 6.7e-41 170.6 99 78.8
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 1.1e-40 169.9 100 76.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.1e-40 169.9 104 80.8
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 1.5e-40 169.5 102 78.4
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 2.5e-40 168.7 99 74.7
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 4.3e-40 167.9 101 74.3
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 5.7e-40 167.5 108 72.2
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 5.7e-40 167.5 92 84.8
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 7.4e-40 167.2 101 74.3
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 7.4e-40 167.2 99 74.7
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 7.4e-40 167.2 100 78.0
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 7.4e-40 167.2 99 79.8
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 7.4e-40 167.2 99 79.8
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 7.4e-40 167.2 108 72.2
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 9.7e-40 166.8 93 84.9
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.3e-39 166.4 99 76.8
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 1.3e-39 166.4 92 84.8
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 1.7e-39 166.0 99 73.7
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 2.8e-39 165.2 101 73.3
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 3.7e-39 164.9 100 73.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 8.2e-39 163.7 99 76.8
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 1.1e-38 163.3 103 70.9
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 1.4e-38 162.9 101 71.3
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.4e-38 162.9 102 71.6
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 3.1e-38 161.8 99 72.7
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 3.1e-38 161.8 99 77.8
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 9.1e-38 160.2 99 74.7
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.5e-37 159.5 98 71.4
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.5e-37 159.5 98 71.4
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.5e-37 159.5 98 71.4
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.5e-37 159.5 98 71.4
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.6e-37 158.7 100 72.0
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 5.9e-37 157.5 108 66.7
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 7.7e-37 157.1 92 79.3
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 2.9e-36 155.2 98 68.4
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 9.4e-35 150.2 100 68.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 2.0e-32 142.5 100 67.0
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 3.3e-32 141.7 92 69.6
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 7.4e-32 140.6 98 63.3
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 9.7e-32 140.2 103 61.2
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 8.2e-31 137.1 73 89.0
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 3.1e-30 135.2 73 87.7
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 4.1e-30 134.8 73 84.9
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 4.1e-30 134.8 103 54.4
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 5.3e-30 134.4 69 88.4
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.5e-29 132.9 102 54.9
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 4.5e-29 131.3 73 82.2
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 7.7e-29 130.6 74 81.1
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.0e-28 127.9 71 84.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 1.9e-27 125.9 72 80.6
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 2.1e-26 122.5 71 80.3
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 1.4e-25 119.8 99 52.5
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.4e-25 119.8 73 74.0
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 1.8e-25 119.4 80 66.2
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 3.0e-25 118.6 72 73.6
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 5.7e-24 114.4 79 64.6
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 2.2e-23 112.5 70 72.9
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 4.5e-21 104.8 103 56.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 6.5e-20 100.9 64 76.6
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.2e-18 96.7 64 76.6
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 7.0e-14 80.9 54 66.7
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 6.8e-09 64.3 40 75.0
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 8.8e-09 63.9 33 90.9
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 1.5e-08 63.2 38 78.9
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 1.7e-07 59.7 42 66.7
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.4e-06 56.6 31 83.9
Atru.chr12.1662 Acer truncatum HOM05D000384 ORTHO05D000468 5.4e-06 54.7 37 73.0
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 7.0e-06 54.3 39 64.1


User provided reference genes

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