Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.1e-110 403.3 208 100.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 4.2e-89 331.6 207 79.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 6.1e-88 327.8 204 82.4
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.9e-87 325.1 207 81.6
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.6e-86 322.4 209 77.0
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 3.3e-86 322.0 206 78.2
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 2.2e-85 319.3 206 79.1
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.8e-85 318.9 197 82.7
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.2e-82 309.3 194 80.9
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.9e-82 308.9 194 80.9
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 8.5e-82 307.4 206 76.7
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 1.1e-81 307.0 206 76.7
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 1.1e-81 307.0 189 81.5
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 1.9e-81 306.2 206 76.2
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.2e-81 305.4 194 79.9
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 5.5e-81 304.7 200 77.5
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 5.5e-81 304.7 200 78.5
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 1.2e-80 303.5 206 73.8
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.6e-80 303.1 210 73.3
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-80 303.1 208 75.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 2.7e-80 302.4 199 77.4
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 2.7e-80 302.4 204 75.5
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 3.6e-80 302.0 206 75.2
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.0e-79 300.4 203 75.4
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 1.0e-79 300.4 209 75.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 1.4e-79 300.1 193 79.8
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 1.8e-79 299.7 205 74.6
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.8e-79 299.7 202 74.8
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 1.8e-79 299.7 207 74.9
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 1.8e-79 299.7 211 72.0
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 2.3e-79 299.3 209 76.1
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 4.0e-79 298.5 198 76.8
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.2e-79 298.1 204 76.5
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 5.2e-79 298.1 204 76.5
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 6.7e-79 297.7 181 81.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 6.7e-79 297.7 208 74.0
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 1.2e-78 297.0 205 75.6
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 1.5e-78 296.6 194 78.4
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 1.5e-78 296.6 206 72.8
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 2.0e-78 296.2 206 71.4
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 2.0e-78 296.2 204 75.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 2.6e-78 295.8 181 79.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.3e-78 295.4 209 72.7
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 4.4e-78 295.0 207 72.9
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 4.4e-78 295.0 205 74.6
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.7e-78 294.7 194 76.3
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 7.5e-78 294.3 177 81.4
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 1.3e-77 293.5 188 77.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 1.7e-77 293.1 209 71.8
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 4.8e-77 291.6 201 76.1
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 8.2e-77 290.8 192 76.6
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 2.4e-76 289.3 200 74.5
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 3.1e-76 288.9 196 76.5
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.1e-76 288.5 200 74.0
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 4.1e-76 288.5 191 77.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 5.3e-76 288.1 204 72.1
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 9.1e-76 287.3 199 72.9
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 9.1e-76 287.3 206 71.8
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.0e-75 286.2 224 69.2
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.0e-74 283.9 207 72.9
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.0e-74 283.9 207 70.5
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.3e-74 283.5 200 72.5
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-74 283.5 207 72.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.2e-74 282.7 202 72.3
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 3.8e-74 282.0 204 72.5
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 5.0e-74 281.6 210 68.6
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 6.5e-74 281.2 201 72.6
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.5e-73 280.0 208 69.7
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.6e-72 276.6 209 66.5
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 2.1e-72 276.2 205 69.3
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.7e-72 275.0 203 69.0
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-71 273.9 196 71.4
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.3e-71 272.7 162 84.0
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 2.3e-71 272.7 290 54.1
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.0e-71 271.9 161 83.2
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 6.8e-71 271.2 190 73.2
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 6.8e-71 271.2 208 69.2
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 8.8e-71 270.8 201 68.7
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.6e-70 269.2 201 68.7
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 4.4e-70 268.5 202 70.3
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 1.7e-69 266.5 202 69.8
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.2e-69 266.2 208 66.8
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.7e-69 265.4 202 69.8
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.8e-68 263.1 203 67.5
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 2.4e-68 262.7 200 67.5
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.4e-68 262.7 221 64.7
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.1e-68 262.3 199 67.3
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 4.1e-68 261.9 201 67.7
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 4.1e-68 261.9 204 66.2
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 5.4e-68 261.5 198 68.2
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.0e-68 261.2 204 65.7
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 9.1e-68 260.8 201 65.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.2e-67 260.4 204 65.7
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.7e-67 259.2 191 68.1
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 3.5e-67 258.8 197 67.0
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 4.5e-67 258.5 201 66.7
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 4.5e-67 258.5 207 66.2
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 3.8e-66 255.4 200 64.0
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 6.6e-66 254.6 192 71.4
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 8.6e-66 254.2 201 65.2
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 1.1e-65 253.8 202 64.4
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.9e-65 253.1 205 68.3
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 2.5e-65 252.7 198 64.1
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 3.3e-65 252.3 197 65.5
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 4.2e-65 251.9 207 64.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 4.2e-65 251.9 200 65.5
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 5.5e-65 251.5 184 67.9
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.2e-65 251.1 198 63.6
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 9.5e-65 250.8 207 64.3
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.2e-64 250.4 191 68.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.1e-64 249.6 197 64.5
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.8e-64 249.2 192 69.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 3.6e-64 248.8 198 63.6
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.1e-64 248.1 204 64.7
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 8.0e-64 247.7 166 75.9
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 6.8e-63 244.6 202 65.3
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 1.5e-62 243.4 158 79.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 2.6e-62 242.7 174 66.7
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.7e-62 241.5 199 65.3
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 7.5e-62 241.1 174 67.8
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 4.5e-59 231.9 157 72.0
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 2.8e-56 222.6 164 69.5
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 5.2e-55 218.4 128 85.2
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.5e-54 216.9 207 58.9
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 4.4e-54 215.3 124 84.7
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 2.2e-53 213.0 123 85.4
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 6.4e-53 211.5 197 55.8
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.1e-48 196.4 200 58.5
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.2e-48 194.9 155 67.7
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 4.4e-46 188.7 176 56.2
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 2.2e-45 186.4 202 51.5
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 7.0e-44 181.4 150 58.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.7e-43 179.5 120 73.3
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 6.0e-43 178.3 97 92.8
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 7.8e-43 177.9 107 84.1
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.0e-42 177.6 192 53.1
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 3.0e-42 176.0 109 84.4
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 4.7e-40 168.7 177 52.0
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.3e-37 160.6 96 78.1
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 4.1e-36 155.6 172 52.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.6e-35 152.1 149 50.3
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 5.1e-34 148.7 172 47.1
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 9.9e-30 134.4 107 65.4
FvH4_6g38550 Fragaria vesca HOM05D005054 ORTHO05D005948 9.3e-20 101.3 98 58.2
Nitab4.5_0006784g0020 Nicotiana tabacum HOM05D005054 ORTHO05D005948 3.9e-18 95.9 207 35.7
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 3.6e-16 89.4 78 55.1
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 6.2e-16 88.6 60 68.3
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 2.4e-15 86.7 177 33.9
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.5e-14 84.0 72 55.6
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.3e-13 80.9 72 55.6
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 6.4e-13 78.6 182 33.0
TPR.G18056 Trifolium pratense HOM05D005054 ORTHO05D005948 2.4e-12 76.6 62 67.7
Aa31LG2G17830 Aethionema arabicum HOM05D005054 ORTHO05D005948 2.3e-10 70.1 84 44.0
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 3.0e-10 69.7 56 62.5
EL10Ac1g01779 Beta vulgaris HOM05D005054 ORTHO05D005948 5.1e-10 68.9 40 85.0
CSS0035454 Camellia sinensis var. sinensis HOM05D000004 ORTHO05D015543 2.6e-06 56.6 63 44.4


User provided reference genes

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