Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 8.7e-287 989.6 486 100.0
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 3.1e-215 751.9 479 76.6
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 1.5e-214 749.6 479 78.1
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 1.5e-214 749.6 479 78.1
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 3.2e-212 741.9 479 77.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 7.8e-211 737.3 479 76.0
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 2.3e-210 735.7 479 76.2
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 5.0e-210 734.6 479 76.4
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 9.5e-209 730.3 479 77.0
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 4.7e-208 728.0 479 76.4
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.1e-207 725.3 479 76.0
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 2.0e-206 722.6 479 76.0
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 2.9e-205 718.8 479 74.9
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 3.7e-205 718.4 479 76.0
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 9.2e-204 713.8 479 75.4
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 9.2e-204 713.8 477 75.1
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 1.6e-203 713.0 479 75.4
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 1.0e-202 710.3 480 74.2
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.3e-202 709.9 479 74.9
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 3.9e-202 708.4 481 74.2
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 5.6e-201 704.5 479 74.1
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 7.3e-201 704.1 479 73.9
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 2.8e-200 702.2 489 73.6
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 8.1e-200 700.7 479 73.1
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 8.1e-200 700.7 479 73.1
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 9.9e-198 693.7 479 72.9
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 4.1e-196 688.3 479 72.7
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 7.1e-196 687.6 479 71.8
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 4.6e-195 684.9 479 71.6
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 7.8e-195 684.1 479 72.7
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 3.9e-194 681.8 479 71.4
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 8.6e-194 680.6 563 64.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 4.3e-193 678.3 479 70.4
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 7.3e-193 677.6 479 71.6
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 9.6e-193 677.2 479 71.0
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 3.6e-192 675.2 480 71.0
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 6.2e-192 674.5 481 69.6
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 8.1e-192 674.1 479 70.6
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.1e-191 673.7 480 70.6
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 3.1e-191 672.2 579 61.8
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 3.1e-191 672.2 479 70.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 1.5e-190 669.8 479 69.5
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 7.6e-190 667.5 480 69.6
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 8.4e-189 664.1 479 68.7
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 1.1e-188 663.7 479 68.5
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 3.5e-187 658.7 479 68.3
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 4.6e-187 658.3 479 67.8
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 7.8e-187 657.5 481 70.3
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.3e-186 656.0 479 68.1
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 3.9e-186 655.2 479 67.6
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 3.9e-186 655.2 482 70.5
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 8.7e-186 654.1 484 66.9
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 1.1e-185 653.7 479 70.1
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 3.3e-185 652.1 479 68.5
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 7.3e-185 651.0 479 67.8
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 6.2e-184 647.9 480 66.7
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 6.2e-184 647.9 479 67.4
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 3.1e-183 645.6 479 69.1
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 4.0e-183 645.2 479 68.5
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 1.5e-182 643.3 479 67.0
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 2.6e-182 642.5 482 66.6
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.4e-182 642.1 479 66.8
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 7.6e-182 641.0 480 66.5
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.3e-181 640.2 480 66.5
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 2.9e-181 639.0 479 66.2
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 3.8e-181 638.6 393 78.1
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 6.4e-181 637.9 480 66.2
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.2e-180 635.2 431 72.2
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 2.7e-179 632.5 480 65.4
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 6.0e-179 631.3 479 67.2
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.0e-178 630.6 480 65.4
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 1.3e-178 630.2 419 74.2
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 2.3e-178 629.4 485 68.2
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 1.9e-177 626.3 479 65.6
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.3e-176 623.6 479 66.8
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 3.6e-176 622.1 480 66.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.4e-175 620.2 482 65.4
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 9.0e-175 617.5 479 65.1
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 7.6e-174 614.4 479 64.7
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.3e-173 613.6 478 64.9
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 1.7e-173 613.2 479 65.1
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.4e-172 609.4 479 65.1
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 9.3e-172 607.4 506 61.9
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 1.1e-169 600.5 479 63.5
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.8e-167 593.2 479 63.9
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.2e-166 590.5 396 75.3
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 2.9e-165 585.9 479 62.0
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 6.0e-163 578.2 480 65.0
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 6.7e-162 574.7 490 60.0
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 3.7e-160 568.9 485 59.6
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 7.2e-156 554.7 476 60.7
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 4.7e-139 498.8 474 54.2
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.7e-121 438.7 305 72.1
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 4.0e-114 416.0 489 46.2
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 2.7e-110 403.3 484 44.2
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.8e-98 364.0 414 50.2
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.5e-92 343.6 256 67.6
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.8e-90 337.4 440 45.2
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 6.8e-90 335.5 416 41.6
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 3.2e-87 326.6 446 38.6
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.1e-83 313.9 211 72.5
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 7.6e-81 305.4 220 66.4
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 1.2e-78 298.1 341 48.7
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 2.5e-76 290.4 250 60.8
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 6.2e-67 259.2 183 68.9
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 1.5e-65 254.6 259 51.4
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.1e-55 219.2 159 73.0
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 1.3e-53 214.9 437 32.7
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 6.5e-48 196.1 225 48.4
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 4.2e-47 193.4 173 62.4
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-46 191.4 149 66.4
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.7e-35 153.7 89 78.7
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 8.2e-35 152.5 164 51.8
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.0e-33 147.9 89 76.4
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.9e-32 144.1 457 24.7
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-31 142.1 89 74.2
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 1.9e-31 141.4 483 25.5
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.5e-31 141.0 71 90.1
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 1.0e-29 135.6 107 58.9
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 5.1e-29 133.3 86 73.3
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 8.8e-29 132.5 481 24.9
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-28 132.1 84 72.6
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 2.0e-28 131.3 107 57.9
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.7e-28 129.0 120 56.7
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 1.4e-26 125.2 133 49.6
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 4.1e-26 123.6 84 72.6
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-25 122.1 84 71.4
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 4.7e-22 110.2 84 67.9
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 5.2e-21 106.7 56 82.1
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.1e-20 105.5 55 87.3
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 5.7e-20 103.2 84 64.3
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 5.7e-20 103.2 149 44.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.8e-18 98.2 89 57.3
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 3.5e-17 94.0 61 70.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.7e-17 92.8 63 71.4
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 7.7e-17 92.8 63 71.4
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 7.7e-17 92.8 84 58.3
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.9e-15 88.2 57 73.7
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 4.2e-15 87.0 266 28.6
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.6e-14 85.1 55 69.1
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.1e-14 84.7 83 51.8
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.1e-14 84.7 78 51.3
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.6e-14 84.0 84 52.4
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.4e-13 82.0 68 57.4
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 5.2e-13 80.1 100 43.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.4e-12 77.0 60 63.3
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-11 75.5 89 47.2
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 1.4e-10 72.0 58 55.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 6.5e-08 63.2 31 90.3


User provided reference genes

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