Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 2.7e-135 485.3 243 100.0
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 1.7e-89 333.2 244 66.8
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 1.3e-84 317.0 243 65.4
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 2.4e-83 312.8 244 62.7
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 1.9e-80 303.1 244 61.9
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.9e-80 303.1 242 60.3
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 4.2e-80 302.0 243 61.3
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 2.7e-79 299.3 243 60.9
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 8.7e-78 294.3 244 61.5
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.5e-77 293.5 243 62.1
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 3.3e-77 292.4 232 63.4
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 5.6e-77 291.6 245 59.6
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 2.1e-76 289.7 243 55.1
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 1.4e-75 287.0 243 57.6
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 1.4e-75 287.0 243 58.0
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 1.8e-75 286.6 243 58.0
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.1e-75 285.8 243 57.6
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 9.0e-75 284.3 243 57.2
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.5e-74 283.5 243 56.0
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.0e-74 283.1 244 58.6
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.0e-73 280.8 243 56.8
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 2.2e-73 279.6 242 59.5
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 2.9e-73 279.3 244 54.1
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.9e-73 278.5 243 56.8
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.5e-71 272.3 243 55.1
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 3.5e-71 272.3 243 57.6
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 1.1e-69 267.3 243 53.5
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 7.4e-69 264.6 245 54.3
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 2.4e-67 259.6 243 52.7
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 4.1e-67 258.8 243 51.9
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 1.5e-66 256.9 247 51.0
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 4.5e-66 255.4 243 51.9
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 7.7e-66 254.6 245 53.9
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 7.7e-66 254.6 244 51.6
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 1.7e-65 253.4 244 49.2
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 3.8e-65 252.3 243 51.0
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 3.8e-65 252.3 243 51.0
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 2.5e-64 249.6 243 48.6
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 5.5e-64 248.4 243 48.6
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 9.4e-64 247.7 247 48.6
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 1.2e-63 247.3 203 61.6
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 2.1e-63 246.5 243 46.1
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.7e-63 246.1 243 47.3
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 4.6e-63 245.4 243 46.5
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 7.9e-63 244.6 244 48.8
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 1.4e-62 243.8 243 49.8
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 3.0e-62 242.7 243 46.5
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 5.1e-62 241.9 243 51.4
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 5.1e-62 241.9 243 52.3
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.0e-61 240.0 245 48.2
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 2.5e-61 239.6 243 44.9
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 2.5e-61 239.6 243 50.6
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 3.3e-61 239.2 246 48.4
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 4.3e-61 238.8 243 46.5
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 4.3e-61 238.8 243 46.5
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 5.7e-61 238.4 243 47.3
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 5.7e-61 238.4 243 47.3
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.7e-60 236.9 243 46.9
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 4.8e-60 235.3 243 46.1
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 1.5e-58 230.3 245 44.9
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.5e-58 230.3 244 50.8
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.6e-58 229.6 242 51.2
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 3.4e-58 229.2 243 46.5
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 7.7e-58 228.0 243 47.7
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 2.9e-57 226.1 266 43.2
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 2.9e-57 226.1 243 50.6
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 6.5e-57 224.9 243 49.8
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.1e-56 224.2 244 52.0
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 1.1e-56 224.2 243 45.7
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 1.4e-56 223.8 243 45.7
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.2e-56 222.6 243 47.7
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 2.7e-55 219.5 185 62.2
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 4.7e-55 218.8 292 40.4
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 3.3e-53 212.6 221 46.6
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 1.7e-52 210.3 174 58.6
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 1.1e-51 207.6 169 58.6
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 2.4e-51 206.5 201 52.2
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 9.1e-51 204.5 246 44.7
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 2.0e-50 203.4 251 44.2
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 6.5e-49 198.4 238 47.1
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 8.5e-49 198.0 243 42.8
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 1.5e-48 197.2 241 43.2
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 3.6e-47 192.6 243 42.8
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 8.0e-47 191.4 206 48.1
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 1.5e-45 187.2 248 41.5
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.7e-44 183.7 243 40.7
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 1.4e-43 180.6 248 39.9
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.0e-41 174.5 251 40.2
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.3e-41 174.1 251 39.4
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 1.3e-41 174.1 251 39.4
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 7.2e-40 168.3 184 44.0
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 5.2e-38 162.2 165 45.5
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 2.6e-37 159.8 175 43.4
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 9.7e-37 157.9 175 45.7
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 2.9e-33 146.4 260 35.0
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.5e-32 144.1 203 37.4
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 9.4e-32 141.4 246 35.0
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 3.9e-17 92.8 93 51.6
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 4.4e-13 79.3 72 51.4
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.7e-12 77.4 71 53.5
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.9e-11 73.9 44 72.7
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 2.3e-09 67.0 69 46.4
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 4.3e-08 62.8 86 44.2


User provided reference genes

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